Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
09:54:10 (2701825): wrapper (7.7.26015): starting
09:54:10 (2701825): wrapper: running run_atlas (--nthreads 4)
[2026-03-07 09:54:10] Arguments: --nthreads 4
[2026-03-07 09:54:10] Threads: 4
[2026-03-07 09:54:10] Checking for CVMFS
[2026-03-07 09:54:10] No cvmfs_config command found, will try listing directly
[2026-03-07 09:54:10] CVMFS is ok
[2026-03-07 09:54:10] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-07 09:54:10] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-07 09:54:10] Further information can be found at the LHC@home message board.
[2026-03-07 09:54:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-07 09:54:10] Checking for apptainer binary...
[2026-03-07 09:54:10] which: no apptainer in ((null))
[2026-03-07 09:54:10] apptainer is not installed, using version from CVMFS
[2026-03-07 09:54:10] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-07 09:54:10] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot28/slots/1/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut11.grid.cesnet.cz
[2026-03-07 09:54:10] apptainer works
[2026-03-07 09:54:10] Set ATHENA_PROC_NUMBER=4
[2026-03-07 09:54:10] Set ATHENA_CORE_NUMBER=4
[2026-03-07 09:54:10] Starting ATLAS job with PandaID=7038498941
[2026-03-07 09:54:10] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot28/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-07 12:51:58]  *** The last 200 lines of the pilot log: ***
[2026-03-07 12:51:58] 2026-03-07 11:50:49,026 | INFO     | preparing for final server update for job 7038498941 in state='finished'
[2026-03-07 12:51:58] 2026-03-07 11:50:49,026 | INFO     | reading metadata from: /var/lib/boinc/var/slot28/slots/1/PanDA_Pilot-7038498941/jobReport.json
[2026-03-07 12:51:58] 2026-03-07 11:50:49,029 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot28/slots/1/workernode_map.json
[2026-03-07 12:51:58] 2026-03-07 11:50:49,029 | INFO     | this job has now completed (state=finished)
[2026-03-07 12:51:58] 2026-03-07 11:50:49,029 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-07 12:51:58] 2026-03-07 11:50:49,029 | INFO     | log transfer has been attempted: DONE
[2026-03-07 12:51:58] 2026-03-07 11:50:49,029 | INFO     | job 7038498941 has finished - writing final server update
[2026-03-07 12:51:58] 2026-03-07 11:50:49,030 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_2361653/.job.ad'
[2026-03-07 12:51:58] 2026-03-07 11:50:49,030 | INFO     | total number of processed events: 400 (read)
[2026-03-07 12:51:58] 2026-03-07 11:50:49,054 | INFO     | using path: /var/lib/boinc/var/slot28/slots/1/PanDA_Pilot-7038498941/memory_monitor_summary.json (trf name=prmon)
[2026-03-07 12:51:58] 2026-03-07 11:50:49,055 | INFO     | extracted standard info from prmon json
[2026-03-07 12:51:58] 2026-03-07 11:50:49,055 | INFO     | extracted standard memory fields from prmon json
[2026-03-07 12:51:58] 2026-03-07 11:50:49,055 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-07 12:51:58] 2026-03-07 11:50:49,055 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-07 12:51:58] 2026-03-07 11:50:49,055 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-07 12:51:58] 2026-03-07 11:50:49,058 | INFO     | fitting pss+swap vs Time
[2026-03-07 12:51:58] 2026-03-07 11:50:49,059 | INFO     | sum of square deviations: 1605470102.0
[2026-03-07 12:51:58] 2026-03-07 11:50:49,060 | INFO     | sum of deviations: 25989660975.999996
[2026-03-07 12:51:58] 2026-03-07 11:50:49,060 | INFO     | mean x: 1772878951.0
[2026-03-07 12:51:58] 2026-03-07 11:50:49,061 | INFO     | mean y: 2296608.225433526
[2026-03-07 12:51:58] 2026-03-07 11:50:49,061 | INFO     | intersect: -28697411240.944164
[2026-03-07 12:51:58] 2026-03-07 11:50:49,061 | INFO     | chi2: 1.3942420527815955
[2026-03-07 12:51:58] 2026-03-07 11:50:49,061 | INFO     | sum of square deviations: 1470248962.0
[2026-03-07 12:51:58] 2026-03-07 11:50:49,062 | INFO     | sum of deviations: 25085895193.500004
[2026-03-07 12:51:58] 2026-03-07 11:50:49,062 | INFO     | mean x: 1772878798.5
[2026-03-07 12:51:58] 2026-03-07 11:50:49,063 | INFO     | mean y: 2295588.720238095
[2026-03-07 12:51:58] 2026-03-07 11:50:49,063 | INFO     | intersect: -30247174317.00938
[2026-03-07 12:51:58] 2026-03-07 11:50:49,063 | INFO     | chi2: 1.3951401922050344
[2026-03-07 12:51:58] 2026-03-07 11:50:49,063 | INFO     | current chi2=1.3951401922050344 (change=-0.06441775455323688 %)
[2026-03-07 12:51:58] 2026-03-07 11:50:49,063 | INFO     | right removable region: 167
[2026-03-07 12:51:58] 2026-03-07 11:50:49,063 | INFO     | sum of square deviations: 1470248962.0
[2026-03-07 12:51:58] 2026-03-07 11:50:49,064 | INFO     | sum of deviations: 2540586560.0
[2026-03-07 12:51:58] 2026-03-07 11:50:49,065 | INFO     | mean x: 1772879103.5
[2026-03-07 12:51:58] 2026-03-07 11:50:49,065 | INFO     | mean y: 2322691.5
[2026-03-07 12:51:58] 2026-03-07 11:50:49,065 | INFO     | intersect: -3061208002.4648423
[2026-03-07 12:51:58] 2026-03-07 11:50:49,065 | INFO     | chi2: 0.0015193440851023773
[2026-03-07 12:51:58] 2026-03-07 11:50:49,065 | INFO     | current chi2=0.0015193440851023773 (change=99.89102723719519 %)
[2026-03-07 12:51:58] 2026-03-07 11:50:49,065 | INFO     | sum of square deviations: 1342841922.0
[2026-03-07 12:51:58] 2026-03-07 11:50:49,066 | INFO     | sum of deviations: 2448680178.000001
[2026-03-07 12:51:58] 2026-03-07 11:50:49,067 | INFO     | mean x: 1772879256.0
[2026-03-07 12:51:58] 2026-03-07 11:50:49,067 | INFO     | mean y: 2322796.030674847
[2026-03-07 12:51:58] 2026-03-07 11:50:49,067 | INFO     | intersect: -3230533001.0901637
[2026-03-07 12:51:58] 2026-03-07 11:50:49,067 | INFO     | chi2: 0.001369387388741796
[2026-03-07 12:51:58] 2026-03-07 11:50:49,067 | INFO     | current chi2=0.001369387388741796 (change=9.869831187744206 %)
[2026-03-07 12:51:58] 2026-03-07 11:50:49,067 | INFO     | left removable region: 20
[2026-03-07 12:51:58] 2026-03-07 11:50:49,067 | INFO     | sum of square deviations: 984941258.0
[2026-03-07 12:51:58] 2026-03-07 11:50:49,068 | INFO     | sum of deviations: 2770309875.999998
[2026-03-07 12:51:58] 2026-03-07 11:50:49,068 | INFO     | mean x: 1772879378.0
[2026-03-07 12:51:58] 2026-03-07 11:50:49,068 | INFO     | mean y: 2321694.0408163266
[2026-03-07 12:51:58] 2026-03-07 11:50:49,069 | INFO     | intersect: -4984194212.301827
[2026-03-07 12:51:58] 2026-03-07 11:50:49,069 | INFO     | chi2: 0.00013334637722586798
[2026-03-07 12:51:58] 2026-03-07 11:50:49,069 | INFO     | current memory leak: 2.81 B/s (using 147 data points, chi2=0.00)
[2026-03-07 12:51:58] 2026-03-07 11:50:49,069 | INFO     | could have reported an average CPU frequency of 2694 MHz (9 samples)
[2026-03-07 12:51:58] 2026-03-07 11:50:49,070 | INFO     | ..............................
[2026-03-07 12:51:58] 2026-03-07 11:50:49,070 | INFO     | . Timing measurements:
[2026-03-07 12:51:58] 2026-03-07 11:50:49,070 | INFO     | . get job = 0 s
[2026-03-07 12:51:58] 2026-03-07 11:50:49,070 | INFO     | . initial setup = 9 s
[2026-03-07 12:51:58] 2026-03-07 11:50:49,070 | INFO     | . payload setup = 10 s
[2026-03-07 12:51:58] 2026-03-07 11:50:49,070 | INFO     | . stage-in = 0 s
[2026-03-07 12:51:58] 2026-03-07 11:50:49,070 | INFO     | . payload execution = 10547 s
[2026-03-07 12:51:58] 2026-03-07 11:50:49,070 | INFO     | . stage-out = 0 s
[2026-03-07 12:51:58] 2026-03-07 11:50:49,070 | INFO     | . log creation = 0 s
[2026-03-07 12:51:58] 2026-03-07 11:50:49,070 | INFO     | ..............................
[2026-03-07 12:51:58] 2026-03-07 11:50:49,318 | INFO     | time since job start (10575s) is within the limit (349056.0s)
[2026-03-07 12:51:58] 2026-03-07 11:50:49,470 | INFO     | 
[2026-03-07 12:51:58] 2026-03-07 11:50:49,470 | INFO     | job summary report
[2026-03-07 12:51:58] 2026-03-07 11:50:49,470 | INFO     | --------------------------------------------------
[2026-03-07 12:51:58] 2026-03-07 11:50:49,470 | INFO     | PanDA job id: 7038498941
[2026-03-07 12:51:58] 2026-03-07 11:50:49,470 | INFO     | task id: 48955015
[2026-03-07 12:51:58] 2026-03-07 11:50:49,470 | INFO     | errors: (none)
[2026-03-07 12:51:58] 2026-03-07 11:50:49,470 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-07 12:51:58] 2026-03-07 11:50:49,470 | INFO     | pilot state: finished 
[2026-03-07 12:51:58] 2026-03-07 11:50:49,470 | INFO     | transexitcode: 0
[2026-03-07 12:51:58] 2026-03-07 11:50:49,471 | INFO     | exeerrorcode: 0
[2026-03-07 12:51:58] 2026-03-07 11:50:49,471 | INFO     | exeerrordiag: 
[2026-03-07 12:51:58] 2026-03-07 11:50:49,471 | INFO     | exitcode: 0
[2026-03-07 12:51:58] 2026-03-07 11:50:49,471 | INFO     | exitmsg: OK
[2026-03-07 12:51:58] 2026-03-07 11:50:49,471 | INFO     | cpuconsumptiontime: 36955 s
[2026-03-07 12:51:58] 2026-03-07 11:50:49,471 | INFO     | nevents: 400
[2026-03-07 12:51:58] 2026-03-07 11:50:49,471 | INFO     | neventsw: 0
[2026-03-07 12:51:58] 2026-03-07 11:50:49,471 | INFO     | pid: 2718718
[2026-03-07 12:51:58] 2026-03-07 11:50:49,471 | INFO     | pgrp: 2718718
[2026-03-07 12:51:58] 2026-03-07 11:50:49,471 | INFO     | corecount: 4
[2026-03-07 12:51:58] 2026-03-07 11:50:49,471 | INFO     | event service: False
[2026-03-07 12:51:58] 2026-03-07 11:50:49,472 | INFO     | sizes: {0: 2295612, 1: 2295818, 11: 2295846, 10561: 2324907, 10563: 2334185}
[2026-03-07 12:51:58] 2026-03-07 11:50:49,472 | INFO     | --------------------------------------------------
[2026-03-07 12:51:58] 2026-03-07 11:50:49,472 | INFO     | 
[2026-03-07 12:51:58] 2026-03-07 11:50:49,472 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot28/slots/1
[2026-03-07 12:51:58] 2026-03-07 11:50:49,501 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-07 12:51:58] 2026-03-07 11:50:49,501 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-07 12:51:58] 2026-03-07 11:50:49,501 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-07 12:51:58] 2026-03-07 11:50:49,502 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-07 12:51:58] 2026-03-07 11:50:49,502 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-07 12:51:58] 2026-03-07 11:50:49,502 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-07 12:51:58] 2026-03-07 11:50:49,502 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-07 12:51:58] 2026-03-07 11:50:49,502 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-07 12:51:58] 2026-03-07 11:50:49,502 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-07 12:51:58] 2026-03-07 11:50:49,502 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-07 12:51:58] 2026-03-07 11:50:49,502 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-07 12:51:58] 2026-03-07 11:50:49,502 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-07 12:51:58] 2026-03-07 11:50:49,502 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-07 12:51:58] 2026-03-07 11:50:49,503 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-07 12:51:58] 2026-03-07 11:50:49,503 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-07 12:51:58] 2026-03-07 11:50:49,503 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-07 12:51:58] 2026-03-07 11:50:49,503 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-07 12:51:58] 2026-03-07 11:50:49,503 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-07 12:51:58] 2026-03-07 11:50:49,503 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-07 12:51:58] 2026-03-07 11:50:49,503 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-07 12:51:58] 2026-03-07 11:50:49,504 | INFO     | job 7038498941 has completed (purged errors)
[2026-03-07 12:51:58] 2026-03-07 11:50:49,504 | INFO     | overall cleanup function is called
[2026-03-07 12:51:58] 2026-03-07 11:50:50,514 | INFO     | --- collectZombieJob: --- 10, [2718718]
[2026-03-07 12:51:58] 2026-03-07 11:50:50,514 | INFO     | zombie collector waiting for pid 2718718
[2026-03-07 12:51:58] 2026-03-07 11:50:50,514 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-07 12:51:58] 2026-03-07 11:50:50,514 | INFO     | collected zombie processes
[2026-03-07 12:51:58] 2026-03-07 11:50:50,514 | INFO     | will attempt to kill all subprocesses of pid=2718718
[2026-03-07 12:51:58] 2026-03-07 11:50:51,314 | INFO     | process IDs to be killed: [2718718] (in reverse order)
[2026-03-07 12:51:58] 2026-03-07 11:50:51,660 | WARNING  | found no corresponding commands to process id(s)
[2026-03-07 12:51:58] 2026-03-07 11:50:51,660 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-07 12:51:58] 2026-03-07 11:50:51,693 | INFO     | did not find any defunct processes belonging to 2718718
[2026-03-07 12:51:58] 2026-03-07 11:50:51,726 | INFO     | did not find any defunct processes belonging to 2718718
[2026-03-07 12:51:58] 2026-03-07 11:50:51,726 | INFO     | ready for new job
[2026-03-07 12:51:58] 2026-03-07 11:50:51,726 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-07 12:51:58] 2026-03-07 11:50:51,729 | INFO     | **************************************
[2026-03-07 12:51:58] 2026-03-07 11:50:51,729 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-07 12:51:58] 2026-03-07 11:50:51,729 | INFO     | **************************************
[2026-03-07 12:51:58] 2026-03-07 11:50:51,729 | INFO     | 
[2026-03-07 12:51:58] 2026-03-07 11:50:51,738 | INFO     | architecture information:
[2026-03-07 12:51:58] 2026-03-07 11:50:51,738 | INFO     | executing command: cat /etc/os-release
[2026-03-07 12:51:58] 2026-03-07 11:50:51,766 | INFO     | cat /etc/os-release:
[2026-03-07 12:51:58] NAME="CentOS Linux"
[2026-03-07 12:51:58] VERSION="7 (Core)"
[2026-03-07 12:51:58] ID="centos"
[2026-03-07 12:51:58] ID_LIKE="rhel fedora"
[2026-03-07 12:51:58] VERSION_ID="7"
[2026-03-07 12:51:58] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-07 12:51:58] ANSI_COLOR="0;31"
[2026-03-07 12:51:58] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-07 12:51:58] HOME_URL="https://www.centos.org/"
[2026-03-07 12:51:58] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-07 12:51:58] 
[2026-03-07 12:51:58] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-07 12:51:58] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-07 12:51:58] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-07 12:51:58] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-07 12:51:58] 
[2026-03-07 12:51:58] 2026-03-07 11:50:51,766 | INFO     | **************************************
[2026-03-07 12:51:58] 2026-03-07 11:50:52,272 | INFO     | executing command: df -mP /var/lib/boinc/var/slot28/slots/1
[2026-03-07 12:51:58] 2026-03-07 11:50:52,301 | INFO     | sufficient remaining disk space (67181215744 B)
[2026-03-07 12:51:58] 2026-03-07 11:50:52,301 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-07 12:51:58] 2026-03-07 11:50:52,302 | INFO     | current server update state: UPDATING_FINAL
[2026-03-07 12:51:58] 2026-03-07 11:50:52,304 | INFO     | update_server=False
[2026-03-07 12:51:58] 2026-03-07 11:50:52,304 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-07 12:51:58] 2026-03-07 11:50:52,304 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-07 12:51:58] 2026-03-07 11:50:52,583 | INFO     | all job control threads have been joined
[2026-03-07 12:51:58] 2026-03-07 11:50:52,737 | INFO     | job.realtimelogging is not enabled
[2026-03-07 12:51:58] 2026-03-07 11:50:52,829 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-07 12:51:58] 2026-03-07 11:50:52,829 | INFO     | aborting loop
[2026-03-07 12:51:58] 2026-03-07 11:50:53,010 | INFO     | all data control threads have been joined
[2026-03-07 12:51:58] 2026-03-07 11:50:53,224 | INFO     | all payload control threads have been joined
[2026-03-07 12:51:58] 2026-03-07 11:50:53,309 | INFO     | [job] retrieve thread has finished
[2026-03-07 12:51:58] 2026-03-07 11:50:53,588 | INFO     | [job] control thread has finished
[2026-03-07 12:51:58] 2026-03-07 11:50:53,742 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-07 12:51:58] 2026-03-07 11:50:53,834 | INFO     | [data] copytool_in thread has finished
[2026-03-07 12:51:58] 2026-03-07 11:50:53,835 | INFO     | [job] job monitor thread has finished
[2026-03-07 12:51:58] 2026-03-07 11:50:53,901 | INFO     | [job] create_data_payload thread has finished
[2026-03-07 12:51:58] 2026-03-07 11:50:54,016 | INFO     | [data] control thread has finished
[2026-03-07 12:51:58] 2026-03-07 11:50:54,124 | INFO     | [payload] execute_payloads thread has finished
[2026-03-07 12:51:58] 2026-03-07 11:50:54,148 | INFO     | [payload] validate_pre thread has finished
[2026-03-07 12:51:58] 2026-03-07 11:50:54,176 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-07 12:51:58] 2026-03-07 11:50:54,232 | INFO     | [payload] control thread has finished
[2026-03-07 12:51:58] 2026-03-07 11:50:54,298 | INFO     | [payload] failed_post thread has finished
[2026-03-07 12:51:58] 2026-03-07 11:50:54,314 | INFO     | [data] copytool_out thread has finished
[2026-03-07 12:51:58] 2026-03-07 11:50:54,363 | INFO     | [job] validate thread has finished
[2026-03-07 12:51:58] 2026-03-07 11:50:54,611 | INFO     | [payload] validate_post thread has finished
[2026-03-07 12:51:58] 2026-03-07 11:50:55,040 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-07 12:51:58] 2026-03-07 11:50:55,183 | INFO     | [job] queue monitor thread has finished
[2026-03-07 12:51:58] 2026-03-07 11:50:59,050 | INFO     | [data] queue_monitor thread has finished
[2026-03-07 12:51:58] 2026-03-07 11:51:23,375 | INFO     | PID=2707873 has CPU usage=10.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-03-07 12:51:58] 2026-03-07 11:51:23,375 | INFO     | .. there are 24 such processes running
[2026-03-07 12:51:58] 2026-03-07 11:51:23,376 | INFO     | found 0 job(s) in 20 queues
[2026-03-07 12:51:58] 2026-03-07 11:51:23,376 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-07 12:51:58] 2026-03-07 11:51:23,376 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-07 12:51:58] 2026-03-07 11:51:52,258 | INFO     | [monitor] cgroup control has ended
[2026-03-07 12:51:58] 2026-03-07 11:51:52,790 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22618233272128)>', '<ExcThread(monitor, started 22617989056256)>']
[2026-03-07 12:51:58] 2026-03-07 11:51:53,562 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-07 12:51:58] 2026-03-07 11:51:53,562 | INFO     | [monitor] control thread has ended
[2026-03-07 12:51:58] 2026-03-07 11:51:57,815 | INFO     | all workflow threads have been joined
[2026-03-07 12:51:58] 2026-03-07 11:51:57,816 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-07 12:51:58] 2026-03-07 11:51:57,816 | INFO     | traces error code: 0
[2026-03-07 12:51:58] 2026-03-07 11:51:57,816 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-07 12:51:58] 2026-03-07 11:51:58,074 [wrapper] ==== pilot stdout END ====
[2026-03-07 12:51:58] 2026-03-07 11:51:58,082 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-07 12:51:58] 2026-03-07 11:51:58,089 [wrapper] pilotpid: 2707873
[2026-03-07 12:51:58] 2026-03-07 11:51:58,094 [wrapper] Pilot exit status: 0
[2026-03-07 12:51:58] 2026-03-07 11:51:58,145 [wrapper] pandaids: 7038498941
[2026-03-07 12:51:58] 2026-03-07 11:51:58,403 [wrapper] cleanup supervisor_pilot 3139986 2707874
[2026-03-07 12:51:58] 2026-03-07 11:51:58,411 [wrapper] Test setup, not cleaning
[2026-03-07 12:51:58] 2026-03-07 11:51:58,415 [wrapper] apfmon messages muted
[2026-03-07 12:51:58] 2026-03-07 11:51:58,418 [wrapper] ==== wrapper stdout END ====
[2026-03-07 12:51:58] 2026-03-07 11:51:58,421 [wrapper] ==== wrapper stderr END ====
[2026-03-07 12:51:58]  *** Error codes and diagnostics ***
[2026-03-07 12:51:58]     "exeErrorCode": 0,
[2026-03-07 12:51:58]     "exeErrorDiag": "",
[2026-03-07 12:51:58]     "pilotErrorCode": 0,
[2026-03-07 12:51:58]     "pilotErrorDiag": "",
[2026-03-07 12:51:58]  *** Listing of results directory ***
[2026-03-07 12:51:58] total 613908
[2026-03-07 12:51:58] -rw-r--r--. 1 boinc boinc    584627 Mar  4 14:58 pilot3.tar.gz
[2026-03-07 12:51:58] -rwx------. 1 boinc boinc     36322 Mar  4 14:58 runpilot2-wrapper.sh
[2026-03-07 12:51:58] -rw-r--r--. 1 boinc boinc      5111 Mar  4 14:58 queuedata.json
[2026-03-07 12:51:58] -rw-r--r--. 1 boinc boinc       100 Mar  7 08:27 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-07 12:51:58] -rwxr-xr-x. 1 boinc boinc      7986 Mar  7 08:27 run_atlas
[2026-03-07 12:51:58] -rw-r--r--. 1 boinc boinc       105 Mar  7 08:27 job.xml
[2026-03-07 12:51:58] -rw-r--r--. 2 boinc boinc 440929120 Mar  7 09:54 EVNT.46701403._002050.pool.root.1
[2026-03-07 12:51:58] -rw-r--r--. 1 boinc boinc      6614 Mar  7 09:54 init_data.xml
[2026-03-07 12:51:58] -rw-r--r--. 2 boinc boinc     15845 Mar  7 09:54 start_atlas.sh
[2026-03-07 12:51:58] drwxrwx--x. 2 boinc boinc      4096 Mar  7 09:54 shared
[2026-03-07 12:51:58] -rw-r--r--. 2 boinc boinc    597955 Mar  7 09:54 input.tar.gz
[2026-03-07 12:51:58] -rw-r--r--. 1 boinc boinc         0 Mar  7 09:54 boinc_lockfile
[2026-03-07 12:51:58] -rw-r--r--. 1 boinc boinc      2569 Mar  7 09:54 pandaJob.out
[2026-03-07 12:51:58] -rw-------. 1 boinc boinc    999161 Mar  7 09:54 agis_schedconf.cvmfs.json
[2026-03-07 12:51:58] -rw-------. 1 boinc boinc   1521291 Mar  7 09:54 agis_ddmendpoints.agis.ALL.json
[2026-03-07 12:51:58] -rw-------. 1 boinc boinc       442 Mar  7 09:54 workernode_map.json
[2026-03-07 12:51:58] drwx------. 5 boinc boinc      4096 Mar  7 09:54 pilot3
[2026-03-07 12:51:58] -rw-------. 1 boinc boinc 180205924 Mar  7 12:50 HITS.48955015._000385.pool.root.1
[2026-03-07 12:51:58] -rw-r--r--. 1 boinc boinc       531 Mar  7 12:50 boinc_task_state.xml
[2026-03-07 12:51:58] -rw-------. 1 boinc boinc      1031 Mar  7 12:50 memory_monitor_summary.json
[2026-03-07 12:51:58] -rw-------. 1 boinc boinc        95 Mar  7 12:50 pilot_heartbeat.json
[2026-03-07 12:51:58] -rw-------. 1 boinc boinc    370261 Mar  7 12:50 log.48955015._000385.job.log.tgz.1
[2026-03-07 12:51:58] -rw-------. 1 boinc boinc      6354 Mar  7 12:50 heartbeat.json
[2026-03-07 12:51:58] -rw-r--r--. 1 boinc boinc        28 Mar  7 12:51 wrapper_checkpoint.txt
[2026-03-07 12:51:58] -rw-r--r--. 1 boinc boinc      8192 Mar  7 12:51 boinc_mmap_file
[2026-03-07 12:51:58] -rw-------. 1 boinc boinc      4902 Mar  7 12:51 pilotlog.txt
[2026-03-07 12:51:58] -rw-------. 1 boinc boinc   1413248 Mar  7 12:51 log.48955015._000385.job.log.1
[2026-03-07 12:51:58] -rw-------. 1 boinc boinc       357 Mar  7 12:51 output.list
[2026-03-07 12:51:58] -rw-r--r--. 1 boinc boinc       620 Mar  7 12:51 runtime_log
[2026-03-07 12:51:58] -rw-------. 1 boinc boinc   1802240 Mar  7 12:51 result.tar.gz
[2026-03-07 12:51:58] -rw-r--r--. 1 boinc boinc      9205 Mar  7 12:51 runtime_log.err
[2026-03-07 12:51:58] -rw-------. 1 boinc boinc       666 Mar  7 12:51 3IOLDmCv1H9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDm3bKLDmd323Tm.diag
[2026-03-07 12:51:58] -rw-r--r--. 1 boinc boinc     21109 Mar  7 12:51 stderr.txt
[2026-03-07 12:51:58] HITS file was successfully produced:
[2026-03-07 12:51:58] -rw-------. 1 boinc boinc 180205924 Mar  7 12:50 shared/HITS.pool.root.1
[2026-03-07 12:51:58]  *** Contents of shared directory: ***
[2026-03-07 12:51:58] total 608948
[2026-03-07 12:51:58] -rw-r--r--. 2 boinc boinc 440929120 Mar  7 09:54 ATLAS.root_0
[2026-03-07 12:51:58] -rw-r--r--. 2 boinc boinc     15845 Mar  7 09:54 start_atlas.sh
[2026-03-07 12:51:58] -rw-r--r--. 2 boinc boinc    597955 Mar  7 09:54 input.tar.gz
[2026-03-07 12:51:58] -rw-------. 1 boinc boinc 180205924 Mar  7 12:50 HITS.pool.root.1
[2026-03-07 12:51:58] -rw-------. 1 boinc boinc   1802240 Mar  7 12:51 result.tar.gz
12:52:00 (2701825): run_atlas exited; CPU time 37588.844613
12:52:00 (2701825): called boinc_finish(0)

</stderr_txt>
]]>

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