Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
04:39:45 (218171): wrapper (7.7.26015): starting
04:39:45 (218171): wrapper: running run_atlas (--nthreads 4)
[2026-03-10 04:39:45] Arguments: --nthreads 4
[2026-03-10 04:39:45] Threads: 4
[2026-03-10 04:39:45] Checking for CVMFS
[2026-03-10 04:39:45] No cvmfs_config command found, will try listing directly
[2026-03-10 04:39:45] CVMFS is ok
[2026-03-10 04:39:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-10 04:39:45] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-10 04:39:45] Further information can be found at the LHC@home message board.
[2026-03-10 04:39:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-10 04:39:45] Checking for apptainer binary...
[2026-03-10 04:39:45] which: no apptainer in ((null))
[2026-03-10 04:39:45] apptainer is not installed, using version from CVMFS
[2026-03-10 04:39:45] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-10 04:39:45] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot12/slots/1/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut12.grid.cesnet.cz
[2026-03-10 04:39:45] apptainer works
[2026-03-10 04:39:45] Set ATHENA_PROC_NUMBER=4
[2026-03-10 04:39:45] Set ATHENA_CORE_NUMBER=4
[2026-03-10 04:39:45] Starting ATLAS job with PandaID=7039964652
[2026-03-10 04:39:45] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot12/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-10 06:55:54]  *** The last 200 lines of the pilot log: ***
[2026-03-10 06:55:54] 2026-03-10 05:55:09,219 | INFO     | extracted standard memory fields from prmon json
[2026-03-10 06:55:54] 2026-03-10 05:55:09,219 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-10 06:55:54] 2026-03-10 05:55:09,220 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-10 06:55:54] 2026-03-10 05:55:09,220 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-10 06:55:54] 2026-03-10 05:55:09,222 | INFO     | fitting pss+swap vs Time
[2026-03-10 06:55:54] 2026-03-10 05:55:09,222 | INFO     | sum of square deviations: 713140813.0
[2026-03-10 06:55:54] 2026-03-10 05:55:09,223 | INFO     | sum of deviations: 14917539203.0
[2026-03-10 06:55:54] 2026-03-10 05:55:09,223 | INFO     | mean x: 1773118065.5
[2026-03-10 06:55:54] 2026-03-10 05:55:09,223 | INFO     | mean y: 2292290.9393939395
[2026-03-10 06:55:54] 2026-03-10 05:55:09,224 | INFO     | intersect: -37087939780.30201
[2026-03-10 06:55:54] 2026-03-10 05:55:09,224 | INFO     | chi2: 1.4379083207069407
[2026-03-10 06:55:54] 2026-03-10 05:55:09,224 | INFO     | sum of square deviations: 635130048.0
[2026-03-10 06:55:54] 2026-03-10 05:55:09,225 | INFO     | sum of deviations: 14377358705.0
[2026-03-10 06:55:54] 2026-03-10 05:55:09,225 | INFO     | mean x: 1773117913.0
[2026-03-10 06:55:54] 2026-03-10 05:55:09,225 | INFO     | mean y: 2291234.42519685
[2026-03-10 06:55:54] 2026-03-10 05:55:09,225 | INFO     | intersect: -40135555088.131386
[2026-03-10 06:55:54] 2026-03-10 05:55:09,225 | INFO     | chi2: 1.4398348609757992
[2026-03-10 06:55:54] 2026-03-10 05:55:09,226 | INFO     | current chi2=1.4398348609757992 (change=-0.13398213509963122 %)
[2026-03-10 06:55:54] 2026-03-10 05:55:09,226 | INFO     | right removable region: 126
[2026-03-10 06:55:54] 2026-03-10 05:55:09,226 | INFO     | sum of square deviations: 635130048.0
[2026-03-10 06:55:54] 2026-03-10 05:55:09,227 | INFO     | sum of deviations: -2914743846.0000005
[2026-03-10 06:55:54] 2026-03-10 05:55:09,227 | INFO     | mean x: 1773118218.0
[2026-03-10 06:55:54] 2026-03-10 05:55:09,227 | INFO     | mean y: 2326513.716535433
[2026-03-10 06:55:54] 2026-03-10 05:55:09,227 | INFO     | intersect: 8139534681.430224
[2026-03-10 06:55:54] 2026-03-10 05:55:09,227 | INFO     | chi2: 0.008416523915886258
[2026-03-10 06:55:54] 2026-03-10 05:55:09,227 | INFO     | current chi2=0.008416523915886258 (change=99.41466894692226 %)
[2026-03-10 06:55:54] 2026-03-10 05:55:09,228 | INFO     | sum of square deviations: 563026370.5
[2026-03-10 06:55:54] 2026-03-10 05:55:09,228 | INFO     | sum of deviations: -2984040273.0000005
[2026-03-10 06:55:54] 2026-03-10 05:55:09,228 | INFO     | mean x: 1773118370.5
[2026-03-10 06:55:54] 2026-03-10 05:55:09,228 | INFO     | mean y: 2326627.9836065574
[2026-03-10 06:55:54] 2026-03-10 05:55:09,229 | INFO     | intersect: 9399855595.710947
[2026-03-10 06:55:54] 2026-03-10 05:55:09,229 | INFO     | chi2: 0.00600325894004661
[2026-03-10 06:55:54] 2026-03-10 05:55:09,229 | INFO     | current chi2=0.00600325894004661 (change=28.67294146559235 %)
[2026-03-10 06:55:54] 2026-03-10 05:55:09,229 | INFO     | sum of square deviations: 496597218.0
[2026-03-10 06:55:54] 2026-03-10 05:55:09,230 | INFO     | sum of deviations: -2225532783.999999
[2026-03-10 06:55:54] 2026-03-10 05:55:09,230 | INFO     | mean x: 1773118523.0
[2026-03-10 06:55:54] 2026-03-10 05:55:09,230 | INFO     | mean y: 2324880.5384615385
[2026-03-10 06:55:54] 2026-03-10 05:55:09,230 | INFO     | intersect: 7948671053.694342
[2026-03-10 06:55:54] 2026-03-10 05:55:09,230 | INFO     | chi2: 0.005451496289520924
[2026-03-10 06:55:54] 2026-03-10 05:55:09,230 | INFO     | current chi2=0.005451496289520924 (change=9.191051994192378 %)
[2026-03-10 06:55:54] 2026-03-10 05:55:09,230 | INFO     | left removable region: 30
[2026-03-10 06:55:54] 2026-03-10 05:55:09,231 | INFO     | sum of square deviations: 274312120.0
[2026-03-10 06:55:54] 2026-03-10 05:55:09,231 | INFO     | sum of deviations: 81461809.50000009
[2026-03-10 06:55:54] 2026-03-10 05:55:09,231 | INFO     | mean x: 1773118797.5
[2026-03-10 06:55:54] 2026-03-10 05:55:09,231 | INFO     | mean y: 2318515.7604166665
[2026-03-10 06:55:54] 2026-03-10 05:55:09,231 | INFO     | intersect: -524240302.3582076
[2026-03-10 06:55:54] 2026-03-10 05:55:09,232 | INFO     | chi2: 0.0013794981506133866
[2026-03-10 06:55:54] 2026-03-10 05:55:09,232 | INFO     | current memory leak: 0.30 B/s (using 96 data points, chi2=0.00)
[2026-03-10 06:55:54] 2026-03-10 05:55:09,232 | INFO     | could have reported an average CPU frequency of 2685 MHz (8 samples)
[2026-03-10 06:55:54] 2026-03-10 05:55:09,232 | INFO     | ..............................
[2026-03-10 06:55:54] 2026-03-10 05:55:09,232 | INFO     | . Timing measurements:
[2026-03-10 06:55:54] 2026-03-10 05:55:09,232 | INFO     | . get job = 0 s
[2026-03-10 06:55:54] 2026-03-10 05:55:09,233 | INFO     | . initial setup = 17 s
[2026-03-10 06:55:54] 2026-03-10 05:55:09,233 | INFO     | . payload setup = 18 s
[2026-03-10 06:55:54] 2026-03-10 05:55:09,233 | INFO     | . stage-in = 0 s
[2026-03-10 06:55:54] 2026-03-10 05:55:09,233 | INFO     | . payload execution = 8047 s
[2026-03-10 06:55:54] 2026-03-10 05:55:09,233 | INFO     | . stage-out = 0 s
[2026-03-10 06:55:54] 2026-03-10 05:55:09,233 | INFO     | . log creation = 0 s
[2026-03-10 06:55:54] 2026-03-10 05:55:09,233 | INFO     | ..............................
[2026-03-10 06:55:54] 2026-03-10 05:55:09,324 | INFO     | 
[2026-03-10 06:55:54] 2026-03-10 05:55:09,324 | INFO     | job summary report
[2026-03-10 06:55:54] 2026-03-10 05:55:09,325 | INFO     | --------------------------------------------------
[2026-03-10 06:55:54] 2026-03-10 05:55:09,325 | INFO     | PanDA job id: 7039964652
[2026-03-10 06:55:54] 2026-03-10 05:55:09,325 | INFO     | task id: 48700922
[2026-03-10 06:55:54] 2026-03-10 05:55:09,325 | INFO     | errors: (none)
[2026-03-10 06:55:54] 2026-03-10 05:55:09,325 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-10 06:55:54] 2026-03-10 05:55:09,325 | INFO     | pilot state: finished 
[2026-03-10 06:55:54] 2026-03-10 05:55:09,325 | INFO     | transexitcode: 0
[2026-03-10 06:55:54] 2026-03-10 05:55:09,325 | INFO     | exeerrorcode: 0
[2026-03-10 06:55:54] 2026-03-10 05:55:09,325 | INFO     | exeerrordiag: 
[2026-03-10 06:55:54] 2026-03-10 05:55:09,325 | INFO     | exitcode: 0
[2026-03-10 06:55:54] 2026-03-10 05:55:09,325 | INFO     | exitmsg: OK
[2026-03-10 06:55:54] 2026-03-10 05:55:09,325 | INFO     | cpuconsumptiontime: 29581 s
[2026-03-10 06:55:54] 2026-03-10 05:55:09,326 | INFO     | nevents: 400
[2026-03-10 06:55:54] 2026-03-10 05:55:09,326 | INFO     | neventsw: 0
[2026-03-10 06:55:54] 2026-03-10 05:55:09,326 | INFO     | pid: 228083
[2026-03-10 06:55:54] 2026-03-10 05:55:09,326 | INFO     | pgrp: 228083
[2026-03-10 06:55:54] 2026-03-10 05:55:09,326 | INFO     | corecount: 4
[2026-03-10 06:55:54] 2026-03-10 05:55:09,326 | INFO     | event service: False
[2026-03-10 06:55:54] 2026-03-10 05:55:09,326 | INFO     | sizes: {0: 2279084, 1: 2280213, 2: 2280213, 8069: 2308272, 8070: 2317348, 8073: 2317486}
[2026-03-10 06:55:54] 2026-03-10 05:55:09,326 | INFO     | --------------------------------------------------
[2026-03-10 06:55:54] 2026-03-10 05:55:09,326 | INFO     | 
[2026-03-10 06:55:54] 2026-03-10 05:55:09,326 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot12/slots/1
[2026-03-10 06:55:54] 2026-03-10 05:55:09,356 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-10 06:55:54] 2026-03-10 05:55:09,356 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-10 06:55:54] 2026-03-10 05:55:09,356 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-10 06:55:54] 2026-03-10 05:55:09,356 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-10 06:55:54] 2026-03-10 05:55:09,356 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-10 06:55:54] 2026-03-10 05:55:09,356 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-10 06:55:54] 2026-03-10 05:55:09,357 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-10 06:55:54] 2026-03-10 05:55:09,357 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-10 06:55:54] 2026-03-10 05:55:09,357 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-10 06:55:54] 2026-03-10 05:55:09,357 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-10 06:55:54] 2026-03-10 05:55:09,357 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-10 06:55:54] 2026-03-10 05:55:09,357 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-10 06:55:54] 2026-03-10 05:55:09,357 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-10 06:55:54] 2026-03-10 05:55:09,357 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-10 06:55:54] 2026-03-10 05:55:09,357 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-10 06:55:54] 2026-03-10 05:55:09,357 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-10 06:55:54] 2026-03-10 05:55:09,357 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-10 06:55:54] 2026-03-10 05:55:09,358 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-10 06:55:54] 2026-03-10 05:55:09,358 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-10 06:55:54] 2026-03-10 05:55:09,358 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-10 06:55:54] 2026-03-10 05:55:09,358 | INFO     | job 7039964652 has completed (purged errors)
[2026-03-10 06:55:54] 2026-03-10 05:55:09,358 | INFO     | overall cleanup function is called
[2026-03-10 06:55:54] 2026-03-10 05:55:10,367 | INFO     | --- collectZombieJob: --- 10, [228083]
[2026-03-10 06:55:54] 2026-03-10 05:55:10,367 | INFO     | zombie collector waiting for pid 228083
[2026-03-10 06:55:54] 2026-03-10 05:55:10,367 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-10 06:55:54] 2026-03-10 05:55:10,367 | INFO     | collected zombie processes
[2026-03-10 06:55:54] 2026-03-10 05:55:10,367 | INFO     | will attempt to kill all subprocesses of pid=228083
[2026-03-10 06:55:54] 2026-03-10 05:55:11,928 | INFO     | process IDs to be killed: [228083] (in reverse order)
[2026-03-10 06:55:54] 2026-03-10 05:55:12,202 | WARNING  | process 228083 can no longer be monitored (due to stat problems) - aborting
[2026-03-10 06:55:54] 2026-03-10 05:55:12,281 | WARNING  | found no corresponding commands to process id(s)
[2026-03-10 06:55:54] 2026-03-10 05:55:12,281 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-10 06:55:54] 2026-03-10 05:55:12,351 | INFO     | did not find any defunct processes belonging to 228083
[2026-03-10 06:55:54] 2026-03-10 05:55:12,420 | INFO     | did not find any defunct processes belonging to 228083
[2026-03-10 06:55:54] 2026-03-10 05:55:12,420 | INFO     | ready for new job
[2026-03-10 06:55:54] 2026-03-10 05:55:12,420 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-10 06:55:54] 2026-03-10 05:55:12,423 | INFO     | **************************************
[2026-03-10 06:55:54] 2026-03-10 05:55:12,423 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-10 06:55:54] 2026-03-10 05:55:12,423 | INFO     | **************************************
[2026-03-10 06:55:54] 2026-03-10 05:55:12,423 | INFO     | 
[2026-03-10 06:55:54] 2026-03-10 05:55:12,436 | INFO     | architecture information:
[2026-03-10 06:55:54] 2026-03-10 05:55:12,437 | INFO     | executing command: cat /etc/os-release
[2026-03-10 06:55:54] 2026-03-10 05:55:12,465 | INFO     | cat /etc/os-release:
[2026-03-10 06:55:54] NAME="CentOS Linux"
[2026-03-10 06:55:54] VERSION="7 (Core)"
[2026-03-10 06:55:54] ID="centos"
[2026-03-10 06:55:54] ID_LIKE="rhel fedora"
[2026-03-10 06:55:54] VERSION_ID="7"
[2026-03-10 06:55:54] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-10 06:55:54] ANSI_COLOR="0;31"
[2026-03-10 06:55:54] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-10 06:55:54] HOME_URL="https://www.centos.org/"
[2026-03-10 06:55:54] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-10 06:55:54] 
[2026-03-10 06:55:54] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-10 06:55:54] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-10 06:55:54] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-10 06:55:54] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-10 06:55:54] 
[2026-03-10 06:55:54] 2026-03-10 05:55:12,465 | INFO     | **************************************
[2026-03-10 06:55:54] 2026-03-10 05:55:12,855 | INFO     | using path: /var/lib/boinc/var/slot12/slots/1/memory_monitor_summary.json (trf name=prmon)
[2026-03-10 06:55:54] 2026-03-10 05:55:12,968 | INFO     | executing command: df -mP /var/lib/boinc/var/slot12/slots/1
[2026-03-10 06:55:54] 2026-03-10 05:55:12,997 | INFO     | sufficient remaining disk space (47987032064 B)
[2026-03-10 06:55:54] 2026-03-10 05:55:12,998 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-10 06:55:54] 2026-03-10 05:55:12,998 | INFO     | current server update state: UPDATING_FINAL
[2026-03-10 06:55:54] 2026-03-10 05:55:12,998 | INFO     | update_server=False
[2026-03-10 06:55:54] 2026-03-10 05:55:12,998 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-10 06:55:54] 2026-03-10 05:55:12,999 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-10 06:55:54] 2026-03-10 05:55:13,518 | INFO     | all payload control threads have been joined
[2026-03-10 06:55:54] 2026-03-10 05:55:13,550 | INFO     | all data control threads have been joined
[2026-03-10 06:55:54] 2026-03-10 05:55:13,686 | INFO     | number of running child processes to parent process 228083: 1
[2026-03-10 06:55:54] 2026-03-10 05:55:13,686 | INFO     | maximum number of monitored processes: 6
[2026-03-10 06:55:54] 2026-03-10 05:55:13,687 | INFO     | aborting job monitoring since job object (job id=7039964652) has expired
[2026-03-10 06:55:54] 2026-03-10 05:55:13,687 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-10 06:55:54] 2026-03-10 05:55:13,687 | INFO     | will abort loop
[2026-03-10 06:55:54] 2026-03-10 05:55:14,003 | INFO     | [job] retrieve thread has finished
[2026-03-10 06:55:54] 2026-03-10 05:55:14,097 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-10 06:55:54] 2026-03-10 05:55:14,202 | INFO     | [payload] validate_post thread has finished
[2026-03-10 06:55:54] 2026-03-10 05:55:14,259 | INFO     | all job control threads have been joined
[2026-03-10 06:55:54] 2026-03-10 05:55:14,270 | INFO     | [job] create_data_payload thread has finished
[2026-03-10 06:55:54] 2026-03-10 05:55:14,334 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-10 06:55:54] 2026-03-10 05:55:14,480 | INFO     | [payload] validate_pre thread has finished
[2026-03-10 06:55:54] 2026-03-10 05:55:14,523 | INFO     | [payload] control thread has finished
[2026-03-10 06:55:54] 2026-03-10 05:55:14,555 | INFO     | [data] control thread has finished
[2026-03-10 06:55:54] 2026-03-10 05:55:14,677 | INFO     | [data] copytool_in thread has finished
[2026-03-10 06:55:54] 2026-03-10 05:55:14,692 | INFO     | [job] job monitor thread has finished
[2026-03-10 06:55:54] 2026-03-10 05:55:14,881 | INFO     | [job] validate thread has finished
[2026-03-10 06:55:54] 2026-03-10 05:55:14,908 | INFO     | [payload] failed_post thread has finished
[2026-03-10 06:55:54] 2026-03-10 05:55:15,103 | INFO     | [payload] execute_payloads thread has finished
[2026-03-10 06:55:54] 2026-03-10 05:55:15,265 | INFO     | [job] control thread has finished
[2026-03-10 06:55:54] 2026-03-10 05:55:15,339 | INFO     | [job] queue monitor thread has finished
[2026-03-10 06:55:54] 2026-03-10 05:55:15,490 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-10 06:55:54] 2026-03-10 05:55:16,102 | INFO     | [data] copytool_out thread has finished
[2026-03-10 06:55:54] 2026-03-10 05:55:16,349 [wrapper] supervise_pilot (15 min periods counter: 10)
[2026-03-10 06:55:54] 2026-03-10 05:55:17,005 | INFO     | [data] queue_monitor thread has finished
[2026-03-10 06:55:54] 2026-03-10 05:55:43,027 | INFO     | PID=222937 has CPU usage=13.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-10 06:55:54] 2026-03-10 05:55:43,027 | INFO     | .. there are 30 such processes running
[2026-03-10 06:55:54] 2026-03-10 05:55:43,029 | INFO     | found 0 job(s) in 20 queues
[2026-03-10 06:55:54] 2026-03-10 05:55:43,029 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-10 06:55:54] 2026-03-10 05:55:43,029 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-10 06:55:54] 2026-03-10 05:55:47,200 | INFO     | [monitor] cgroup control has ended
[2026-03-10 06:55:54] 2026-03-10 05:55:48,693 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22754738988864)>', '<ExcThread(monitor, started 22754484270848)>']
[2026-03-10 06:55:54] 2026-03-10 05:55:49,059 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-10 06:55:54] 2026-03-10 05:55:49,059 | INFO     | [monitor] control thread has ended
[2026-03-10 06:55:54] 2026-03-10 05:55:53,718 | INFO     | all workflow threads have been joined
[2026-03-10 06:55:54] 2026-03-10 05:55:53,718 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-10 06:55:54] 2026-03-10 05:55:53,718 | INFO     | traces error code: 0
[2026-03-10 06:55:54] 2026-03-10 05:55:53,719 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-10 06:55:54] 2026-03-10 05:55:53,862 [wrapper] ==== pilot stdout END ====
[2026-03-10 06:55:54] 2026-03-10 05:55:53,866 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-10 06:55:54] 2026-03-10 05:55:53,870 [wrapper] pilotpid: 222937
[2026-03-10 06:55:54] 2026-03-10 05:55:53,875 [wrapper] Pilot exit status: 0
[2026-03-10 06:55:54] 2026-03-10 05:55:53,892 [wrapper] pandaids: 7039964652
[2026-03-10 06:55:54] 2026-03-10 05:55:54,073 [wrapper] cleanup supervisor_pilot  534352 222938
[2026-03-10 06:55:54] 2026-03-10 05:55:54,077 [wrapper] Test setup, not cleaning
[2026-03-10 06:55:54] 2026-03-10 05:55:54,081 [wrapper] apfmon messages muted
[2026-03-10 06:55:54] 2026-03-10 05:55:54,084 [wrapper] ==== wrapper stdout END ====
[2026-03-10 06:55:54] 2026-03-10 05:55:54,088 [wrapper] ==== wrapper stderr END ====
[2026-03-10 06:55:54]  *** Error codes and diagnostics ***
[2026-03-10 06:55:54]     "exeErrorCode": 0,
[2026-03-10 06:55:54]     "exeErrorDiag": "",
[2026-03-10 06:55:54]     "pilotErrorCode": 0,
[2026-03-10 06:55:54]     "pilotErrorDiag": "",
[2026-03-10 06:55:54]  *** Listing of results directory ***
[2026-03-10 06:55:54] total 336672
[2026-03-10 06:55:54] -rw-r--r--. 1 boinc boinc    584627 Mar  4 14:58 pilot3.tar.gz
[2026-03-10 06:55:54] -rwx------. 1 boinc boinc     36322 Mar  4 14:58 runpilot2-wrapper.sh
[2026-03-10 06:55:54] -rw-r--r--. 1 boinc boinc      5111 Mar  4 15:00 queuedata.json
[2026-03-10 06:55:54] -rw-r--r--. 1 boinc boinc       100 Mar 10 04:39 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-10 06:55:54] -rwxr-xr-x. 1 boinc boinc      7986 Mar 10 04:39 run_atlas
[2026-03-10 06:55:54] -rw-r--r--. 1 boinc boinc       105 Mar 10 04:39 job.xml
[2026-03-10 06:55:54] -rw-r--r--. 1 boinc boinc      6615 Mar 10 04:39 init_data.xml
[2026-03-10 06:55:54] -rw-r--r--. 2 boinc boinc 192138498 Mar 10 04:39 EVNT.48700920._000129.pool.root.1
[2026-03-10 06:55:54] drwxrwx--x. 2 boinc boinc      4096 Mar 10 04:39 shared
[2026-03-10 06:55:54] -rw-r--r--. 2 boinc boinc    597934 Mar 10 04:39 input.tar.gz
[2026-03-10 06:55:54] -rw-r--r--. 2 boinc boinc     15845 Mar 10 04:39 start_atlas.sh
[2026-03-10 06:55:54] -rw-r--r--. 1 boinc boinc         0 Mar 10 04:39 boinc_lockfile
[2026-03-10 06:55:54] -rw-r--r--. 1 boinc boinc      2517 Mar 10 04:39 pandaJob.out
[2026-03-10 06:55:54] -rw-------. 1 boinc boinc   1006495 Mar 10 04:40 agis_schedconf.cvmfs.json
[2026-03-10 06:55:54] -rw-------. 1 boinc boinc   1511578 Mar 10 04:40 agis_ddmendpoints.agis.ALL.json
[2026-03-10 06:55:54] -rw-------. 1 boinc boinc       443 Mar 10 04:40 workernode_map.json
[2026-03-10 06:55:54] drwx------. 5 boinc boinc      4096 Mar 10 04:40 pilot3
[2026-03-10 06:55:54] -rw-------. 1 boinc boinc 145801286 Mar 10 06:54 HITS.48700922._003367.pool.root.1
[2026-03-10 06:55:54] -rw-r--r--. 1 boinc boinc       529 Mar 10 06:54 boinc_task_state.xml
[2026-03-10 06:55:54] -rw-------. 1 boinc boinc      1027 Mar 10 06:55 memory_monitor_summary.json
[2026-03-10 06:55:54] -rw-------. 1 boinc boinc    319263 Mar 10 06:55 log.48700922._003367.job.log.tgz.1
[2026-03-10 06:55:54] -rw-------. 1 boinc boinc      6349 Mar 10 06:55 heartbeat.json
[2026-03-10 06:55:54] -rw-------. 1 boinc boinc        95 Mar 10 06:55 pilot_heartbeat.json
[2026-03-10 06:55:54] -rw-r--r--. 1 boinc boinc      8192 Mar 10 06:55 boinc_mmap_file
[2026-03-10 06:55:54] -rw-r--r--. 1 boinc boinc        27 Mar 10 06:55 wrapper_checkpoint.txt
[2026-03-10 06:55:54] -rw-------. 1 boinc boinc      5246 Mar 10 06:55 pilotlog.txt
[2026-03-10 06:55:54] -rw-------. 1 boinc boinc   1119802 Mar 10 06:55 log.48700922._003367.job.log.1
[2026-03-10 06:55:54] -rw-------. 1 boinc boinc       357 Mar 10 06:55 output.list
[2026-03-10 06:55:54] -rw-r--r--. 1 boinc boinc       620 Mar 10 06:55 runtime_log
[2026-03-10 06:55:54] -rw-------. 1 boinc boinc   1454080 Mar 10 06:55 result.tar.gz
[2026-03-10 06:55:54] -rw-------. 1 boinc boinc       662 Mar 10 06:55 yrdKDmlv1H9n9Rq4apOajLDm4fhM0noT9bVooX4SDmBcILDmoDK7Qo.diag
[2026-03-10 06:55:54] -rw-r--r--. 1 boinc boinc      9204 Mar 10 06:55 runtime_log.err
[2026-03-10 06:55:54] -rw-r--r--. 1 boinc boinc     20843 Mar 10 06:55 stderr.txt
[2026-03-10 06:55:54] HITS file was successfully produced:
[2026-03-10 06:55:54] -rw-------. 1 boinc boinc 145801286 Mar 10 06:54 shared/HITS.pool.root.1
[2026-03-10 06:55:54]  *** Contents of shared directory: ***
[2026-03-10 06:55:54] total 332052
[2026-03-10 06:55:54] -rw-r--r--. 2 boinc boinc 192138498 Mar 10 04:39 ATLAS.root_0
[2026-03-10 06:55:54] -rw-r--r--. 2 boinc boinc    597934 Mar 10 04:39 input.tar.gz
[2026-03-10 06:55:54] -rw-r--r--. 2 boinc boinc     15845 Mar 10 04:39 start_atlas.sh
[2026-03-10 06:55:54] -rw-------. 1 boinc boinc 145801286 Mar 10 06:54 HITS.pool.root.1
[2026-03-10 06:55:54] -rw-------. 1 boinc boinc   1454080 Mar 10 06:55 result.tar.gz
06:55:56 (218171): run_atlas exited; CPU time 30052.590714
06:55:56 (218171): called boinc_finish(0)

</stderr_txt>
]]>

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