Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
02:00:44 (1497320): wrapper (7.7.26015): starting
02:00:44 (1497320): wrapper: running run_atlas (--nthreads 3)
[2026-03-05 02:00:44] Arguments: --nthreads 3
[2026-03-05 02:00:44] Threads: 3
[2026-03-05 02:00:44] Checking for CVMFS
[2026-03-05 02:00:44] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-05 02:00:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-05 02:00:45] Running cvmfs_config stat atlas.cern.ch
[2026-03-05 02:00:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-05 02:00:45] 2.9.2.0 36558 10674 85356 156897 3 50 27878717 36864000 0 130560 0 4108971 99.981 394156 15642 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-05 02:00:45] CVMFS is ok
[2026-03-05 02:00:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-05 02:00:45] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-05 02:00:45] Further information can be found at the LHC@home message board.
[2026-03-05 02:00:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-05 02:00:45] Checking for apptainer binary...
[2026-03-05 02:00:45] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-05 02:00:45] Running /usr/bin/apptainer --version
[2026-03-05 02:00:45] apptainer version 1.4.1-1.1
[2026-03-05 02:00:45] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-05 02:00:45] magicA252
[2026-03-05 02:00:45] apptainer works
[2026-03-05 02:00:45] Set ATHENA_PROC_NUMBER=3
[2026-03-05 02:00:45] Set ATHENA_CORE_NUMBER=3
[2026-03-05 02:00:45] Starting ATLAS job with PandaID=7038749540
[2026-03-05 02:00:45] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-05 03:06:06]  *** The last 200 lines of the pilot log: ***
[2026-03-05 03:06:06] 2026-03-05 02:05:26,904 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-05 03:06:06] 2026-03-05 02:05:26,904 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-05 03:06:06] 2026-03-05 02:05:26,904 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-05 03:06:06] 2026-03-05 02:05:26,904 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-05 03:06:06] 2026-03-05 02:05:26,904 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-05 03:06:06] 2026-03-05 02:05:26,904 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-05 03:06:06] 2026-03-05 02:05:26,904 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-05 03:06:06] 2026-03-05 02:05:26,904 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-05 03:06:06] 2026-03-05 02:05:26,904 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-05 03:06:06] 2026-03-05 02:05:26,904 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-05 03:06:06] 2026-03-05 02:05:26,904 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-05 03:06:06] 2026-03-05 02:05:26,904 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-05 03:06:06] 2026-03-05 02:05:26,904 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-05 03:06:06] 2026-03-05 02:05:26,904 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-05 03:06:06] 2026-03-05 02:05:26,904 | INFO     | job 7038749540 has completed (purged errors)
[2026-03-05 03:06:06] 2026-03-05 02:05:26,904 | INFO     | overall cleanup function is called
[2026-03-05 03:06:06] 2026-03-05 02:05:27,908 | INFO     | --- collectZombieJob: --- 10, [1505787]
[2026-03-05 03:06:06] 2026-03-05 02:05:27,908 | INFO     | zombie collector waiting for pid 1505787
[2026-03-05 03:06:06] 2026-03-05 02:05:27,909 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-05 03:06:06] 2026-03-05 02:05:27,909 | INFO     | collected zombie processes
[2026-03-05 03:06:06] 2026-03-05 02:05:27,909 | INFO     | will attempt to kill all subprocesses of pid=1505787
[2026-03-05 03:06:06] 2026-03-05 02:05:27,948 | INFO     | process IDs to be killed: [1505787] (in reverse order)
[2026-03-05 03:06:06] 2026-03-05 02:05:27,974 | WARNING  | found no corresponding commands to process id(s)
[2026-03-05 03:06:06] 2026-03-05 02:05:27,974 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-05 03:06:06] 2026-03-05 02:05:27,975 | INFO     | did not find any defunct processes belonging to 1505787
[2026-03-05 03:06:06] 2026-03-05 02:05:27,976 | INFO     | did not find any defunct processes belonging to 1505787
[2026-03-05 03:06:06] 2026-03-05 02:05:27,976 | INFO     | ready for new job
[2026-03-05 03:06:06] 2026-03-05 02:05:27,976 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-05 03:06:06] 2026-03-05 02:05:27,977 | INFO     | **************************************
[2026-03-05 03:06:06] 2026-03-05 02:05:27,977 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-05 03:06:06] 2026-03-05 02:05:27,977 | INFO     | **************************************
[2026-03-05 03:06:06] 2026-03-05 02:05:27,977 | INFO     | 
[2026-03-05 03:06:06] 2026-03-05 02:05:27,978 | INFO     | architecture information:
[2026-03-05 03:06:06] 2026-03-05 02:05:27,978 | INFO     | executing command: cat /etc/os-release
[2026-03-05 03:06:06] 2026-03-05 02:05:27,987 | INFO     | cat /etc/os-release:
[2026-03-05 03:06:06] NAME="CentOS Linux"
[2026-03-05 03:06:06] VERSION="7 (Core)"
[2026-03-05 03:06:06] ID="centos"
[2026-03-05 03:06:06] ID_LIKE="rhel fedora"
[2026-03-05 03:06:06] VERSION_ID="7"
[2026-03-05 03:06:06] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-05 03:06:06] ANSI_COLOR="0;31"
[2026-03-05 03:06:06] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-05 03:06:06] HOME_URL="https://www.centos.org/"
[2026-03-05 03:06:06] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-05 03:06:06] 
[2026-03-05 03:06:06] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-05 03:06:06] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-05 03:06:06] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-05 03:06:06] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-05 03:06:06] 
[2026-03-05 03:06:06] 2026-03-05 02:05:27,987 | INFO     | **************************************
[2026-03-05 03:06:06] 2026-03-05 02:05:28,490 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-05 03:06:06] 2026-03-05 02:05:28,502 | INFO     | sufficient remaining disk space (376258428928 B)
[2026-03-05 03:06:06] 2026-03-05 02:05:28,503 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-05 03:06:06] 2026-03-05 02:05:28,503 | INFO     | current server update state: UPDATING_FINAL
[2026-03-05 03:06:06] 2026-03-05 02:05:28,503 | INFO     | update_server=False
[2026-03-05 03:06:06] 2026-03-05 02:05:28,503 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-05 03:06:06] 2026-03-05 02:05:28,503 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-05 03:06:06] 2026-03-05 02:05:28,604 | INFO     | all data control threads have been joined
[2026-03-05 03:06:06] 2026-03-05 02:05:28,639 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-05 03:06:06] 2026-03-05 02:05:28,639 | INFO     | aborting loop
[2026-03-05 03:06:06] 2026-03-05 02:05:29,504 | INFO     | [job] queue monitor thread has finished
[2026-03-05 03:06:06] 2026-03-05 02:05:29,508 | INFO     | [job] retrieve thread has finished
[2026-03-05 03:06:06] 2026-03-05 02:05:29,518 | INFO     | [payload] execute_payloads thread has finished
[2026-03-05 03:06:06] 2026-03-05 02:05:29,607 | INFO     | [data] control thread has finished
[2026-03-05 03:06:06] 2026-03-05 02:05:29,644 | INFO     | [job] job monitor thread has finished
[2026-03-05 03:06:06] 2026-03-05 02:05:29,672 | INFO     | all payload control threads have been joined
[2026-03-05 03:06:06] 2026-03-05 02:05:29,819 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-05 03:06:06] 2026-03-05 02:05:29,848 | INFO     | [payload] validate_post thread has finished
[2026-03-05 03:06:06] 2026-03-05 02:05:29,921 | INFO     | all job control threads have been joined
[2026-03-05 03:06:06] 2026-03-05 02:05:30,422 | INFO     | [job] validate thread has finished
[2026-03-05 03:06:06] 2026-03-05 02:05:30,434 | INFO     | [job] create_data_payload thread has finished
[2026-03-05 03:06:06] 2026-03-05 02:05:30,571 | INFO     | [payload] validate_pre thread has finished
[2026-03-05 03:06:06] 2026-03-05 02:05:30,678 | INFO     | [payload] control thread has finished
[2026-03-05 03:06:06] 2026-03-05 02:05:30,691 | INFO     | [data] copytool_in thread has finished
[2026-03-05 03:06:06] 2026-03-05 02:05:30,921 | INFO     | [payload] failed_post thread has finished
[2026-03-05 03:06:06] 2026-03-05 02:05:30,926 | INFO     | [job] control thread has finished
[2026-03-05 03:06:06] 2026-03-05 02:05:31,699 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-05 03:06:06] 2026-03-05 02:05:31,824 | INFO     | [data] copytool_out thread has finished
[2026-03-05 03:06:06] 2026-03-05 02:05:35,706 | INFO     | [data] queue_monitor thread has finished
[2026-03-05 03:06:06] 2026-03-05 02:05:38,793 | INFO     | job.realtimelogging is not enabled
[2026-03-05 03:06:06] 2026-03-05 02:05:39,799 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-05 03:06:06] 2026-03-05 02:05:58,077 | INFO     | PID=1501362 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-05 03:06:06] 2026-03-05 02:05:58,078 | INFO     | found 0 job(s) in 20 queues
[2026-03-05 03:06:06] 2026-03-05 02:05:58,078 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-05 03:06:06] 2026-03-05 02:05:58,078 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-05 03:06:06] 2026-03-05 02:05:59,743 | INFO     | [monitor] cgroup control has ended
[2026-03-05 03:06:06] 2026-03-05 02:06:00,980 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140561497749312)>', '<ExcThread(monitor, started 140560790714112)>']
[2026-03-05 03:06:06] 2026-03-05 02:06:01,093 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-05 03:06:06] 2026-03-05 02:06:01,094 | INFO     | [monitor] control thread has ended
[2026-03-05 03:06:06] 2026-03-05 02:06:05,998 | INFO     | all workflow threads have been joined
[2026-03-05 03:06:06] 2026-03-05 02:06:05,998 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-05 03:06:06] 2026-03-05 02:06:05,999 | INFO     | traces error code: 0
[2026-03-05 03:06:06] 2026-03-05 02:06:05,999 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-05 03:06:06] 2026-03-05 02:06:06,046 [wrapper] ==== pilot stdout END ====
[2026-03-05 03:06:06] 2026-03-05 02:06:06,049 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-05 03:06:06] 2026-03-05 02:06:06,051 [wrapper] pilotpid: 1501362
[2026-03-05 03:06:06] 2026-03-05 02:06:06,054 [wrapper] Pilot exit status: 0
[2026-03-05 03:06:06] 2026-03-05 02:06:06,062 [wrapper] pandaids: 7038749540
[2026-03-05 03:06:06] 2026-03-05 02:06:06,078 [wrapper] cleanup supervisor_pilot 1511010 1501363
[2026-03-05 03:06:06] 2026-03-05 02:06:06,081 [wrapper] Test setup, not cleaning
[2026-03-05 03:06:06] 2026-03-05 02:06:06,083 [wrapper] apfmon messages muted
[2026-03-05 03:06:06] 2026-03-05 02:06:06,086 [wrapper] ==== wrapper stdout END ====
[2026-03-05 03:06:06] 2026-03-05 02:06:06,088 [wrapper] ==== wrapper stderr END ====
[2026-03-05 03:06:06]  *** Error codes and diagnostics ***
[2026-03-05 03:06:06]     "exeErrorCode": 0,
[2026-03-05 03:06:06]     "exeErrorDiag": "",
[2026-03-05 03:06:06]     "pilotErrorCode": 0,
[2026-03-05 03:06:06]     "pilotErrorDiag": "",
[2026-03-05 03:06:06]  *** Listing of results directory ***
[2026-03-05 03:06:06] total 339788
[2026-03-05 03:06:06] -rw-r--r-- 1 boinc boinc    584627 Mar  4 10:32 pilot3.tar.gz
[2026-03-05 03:06:06] -rw-r--r-- 1 boinc boinc      5111 Mar  4 10:32 queuedata.json
[2026-03-05 03:06:06] -rwx------ 1 boinc boinc     36322 Mar  4 10:32 runpilot2-wrapper.sh
[2026-03-05 03:06:06] -rw-r--r-- 1 boinc boinc       100 Mar  5 02:00 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-05 03:06:06] -rwxr-xr-x 1 boinc boinc      7986 Mar  5 02:00 run_atlas
[2026-03-05 03:06:06] -rw-r--r-- 1 boinc boinc       105 Mar  5 02:00 job.xml
[2026-03-05 03:06:06] -rw-r--r-- 2 boinc boinc 192033734 Mar  5 02:00 EVNT.48700888._000123.pool.root.1
[2026-03-05 03:06:06] -rw-r--r-- 2 boinc boinc    597931 Mar  5 02:00 input.tar.gz
[2026-03-05 03:06:06] -rw-r--r-- 2 boinc boinc     15845 Mar  5 02:00 start_atlas.sh
[2026-03-05 03:06:06] drwxrwx--x 2 boinc boinc      4096 Mar  5 02:00 shared
[2026-03-05 03:06:06] -rw-r--r-- 1 boinc boinc         0 Mar  5 02:00 boinc_setup_complete
[2026-03-05 03:06:06] -rw-r--r-- 1 boinc boinc      6449 Mar  5 02:00 init_data.xml
[2026-03-05 03:06:06] -rw-r--r-- 1 boinc boinc         0 Mar  5 02:00 boinc_lockfile
[2026-03-05 03:06:06] -rw-r--r-- 1 boinc boinc      2512 Mar  5 02:00 pandaJob.out
[2026-03-05 03:06:06] -rw------- 1 boinc boinc    997749 Mar  5 02:00 agis_schedconf.cvmfs.json
[2026-03-05 03:06:06] -rw------- 1 boinc boinc   1521291 Mar  5 02:00 agis_ddmendpoints.agis.ALL.json
[2026-03-05 03:06:06] -rw------- 1 boinc boinc       426 Mar  5 02:00 workernode_map.json
[2026-03-05 03:06:06] drwx------ 5 boinc boinc      4096 Mar  5 02:00 pilot3
[2026-03-05 03:06:06] -rw------- 1 boinc boinc 150323168 Mar  5 03:05 HITS.48700890._002867.pool.root.1
[2026-03-05 03:06:06] -rw------- 1 boinc boinc        95 Mar  5 03:05 pilot_heartbeat.json
[2026-03-05 03:06:06] -rw-r--r-- 1 boinc boinc       529 Mar  5 03:05 boinc_task_state.xml
[2026-03-05 03:06:06] -rw------- 1 boinc boinc      1020 Mar  5 03:05 memory_monitor_summary.json
[2026-03-05 03:06:06] -rw------- 1 boinc boinc    247012 Mar  5 03:05 log.48700890._002867.job.log.tgz.1
[2026-03-05 03:06:06] -rw------- 1 boinc boinc      6306 Mar  5 03:05 heartbeat.json
[2026-03-05 03:06:06] -rw-r--r-- 1 boinc boinc      8192 Mar  5 03:05 boinc_mmap_file
[2026-03-05 03:06:06] -rw-r--r-- 1 boinc boinc        27 Mar  5 03:05 wrapper_checkpoint.txt
[2026-03-05 03:06:06] -rw------- 1 boinc boinc      4820 Mar  5 03:06 pilotlog.txt
[2026-03-05 03:06:06] -rw------- 1 boinc boinc    580292 Mar  5 03:06 log.48700890._002867.job.log.1
[2026-03-05 03:06:06] -rw------- 1 boinc boinc       357 Mar  5 03:06 output.list
[2026-03-05 03:06:06] -rw-r--r-- 1 boinc boinc       620 Mar  5 03:06 runtime_log
[2026-03-05 03:06:06] -rw------- 1 boinc boinc    849920 Mar  5 03:06 result.tar.gz
[2026-03-05 03:06:06] -rw-r--r-- 1 boinc boinc      8911 Mar  5 03:06 runtime_log.err
[2026-03-05 03:06:06] -rw------- 1 boinc boinc       660 Mar  5 03:06 QZ4KDmGmxH9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmVyJLDmPLCyZm.diag
[2026-03-05 03:06:06] -rw-r--r-- 1 boinc boinc     12340 Mar  5 03:06 stderr.txt
[2026-03-05 03:06:06] HITS file was successfully produced:
[2026-03-05 03:06:06] -rw------- 1 boinc boinc 150323168 Mar  5 03:05 shared/HITS.pool.root.1
[2026-03-05 03:06:06]  *** Contents of shared directory: ***
[2026-03-05 03:06:06] total 335772
[2026-03-05 03:06:06] -rw-r--r-- 2 boinc boinc 192033734 Mar  5 02:00 ATLAS.root_0
[2026-03-05 03:06:06] -rw-r--r-- 2 boinc boinc    597931 Mar  5 02:00 input.tar.gz
[2026-03-05 03:06:06] -rw-r--r-- 2 boinc boinc     15845 Mar  5 02:00 start_atlas.sh
[2026-03-05 03:06:06] -rw------- 1 boinc boinc 150323168 Mar  5 03:05 HITS.pool.root.1
[2026-03-05 03:06:06] -rw------- 1 boinc boinc    849920 Mar  5 03:06 result.tar.gz
03:06:07 (1497320): run_atlas exited; CPU time 10917.100959
03:06:07 (1497320): called boinc_finish(0)

</stderr_txt>
]]>

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