Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
00:55:16 (1483561): wrapper (7.7.26015): starting
00:55:16 (1483561): wrapper: running run_atlas (--nthreads 3)
[2026-03-05 00:55:16] Arguments: --nthreads 3
[2026-03-05 00:55:16] Threads: 3
[2026-03-05 00:55:16] Checking for CVMFS
[2026-03-05 00:55:16] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-05 00:55:17] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-05 00:55:17] Running cvmfs_config stat atlas.cern.ch
[2026-03-05 00:55:17] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-05 00:55:17] 2.9.2.0 36558 10608 84536 156896 0 50 27873166 36864001 0 130560 0 4069305 99.981 392740 15673 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-05 00:55:17] CVMFS is ok
[2026-03-05 00:55:17] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-05 00:55:17] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-05 00:55:17] Further information can be found at the LHC@home message board.
[2026-03-05 00:55:17] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-05 00:55:17] Checking for apptainer binary...
[2026-03-05 00:55:17] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-05 00:55:17] Running /usr/bin/apptainer --version
[2026-03-05 00:55:17] apptainer version 1.4.1-1.1
[2026-03-05 00:55:17] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-05 00:55:17] magicA252
[2026-03-05 00:55:17] apptainer works
[2026-03-05 00:55:17] Set ATHENA_PROC_NUMBER=3
[2026-03-05 00:55:17] Set ATHENA_CORE_NUMBER=3
[2026-03-05 00:55:17] Starting ATLAS job with PandaID=7037673162
[2026-03-05 00:55:17] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-05 02:00:40]  *** The last 200 lines of the pilot log: ***
[2026-03-05 02:00:40] 2026-03-05 01:00:08,611 | INFO     | collected zombie processes
[2026-03-05 02:00:40] 2026-03-05 01:00:08,611 | INFO     | will attempt to kill all subprocesses of pid=1492029
[2026-03-05 02:00:40] 2026-03-05 01:00:08,652 | INFO     | process IDs to be killed: [1492029] (in reverse order)
[2026-03-05 02:00:40] 2026-03-05 01:00:08,677 | WARNING  | found no corresponding commands to process id(s)
[2026-03-05 02:00:40] 2026-03-05 01:00:08,677 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-05 02:00:40] 2026-03-05 01:00:08,679 | INFO     | did not find any defunct processes belonging to 1492029
[2026-03-05 02:00:40] 2026-03-05 01:00:08,679 | INFO     | did not find any defunct processes belonging to 1492029
[2026-03-05 02:00:40] 2026-03-05 01:00:08,680 | INFO     | ready for new job
[2026-03-05 02:00:40] 2026-03-05 01:00:08,680 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-05 02:00:40] 2026-03-05 01:00:08,680 | INFO     | **************************************
[2026-03-05 02:00:40] 2026-03-05 01:00:08,681 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-05 02:00:40] 2026-03-05 01:00:08,681 | INFO     | **************************************
[2026-03-05 02:00:40] 2026-03-05 01:00:08,681 | INFO     | 
[2026-03-05 02:00:40] 2026-03-05 01:00:08,681 | INFO     | architecture information:
[2026-03-05 02:00:40] 2026-03-05 01:00:08,681 | INFO     | executing command: cat /etc/os-release
[2026-03-05 02:00:40] 2026-03-05 01:00:08,690 | INFO     | cat /etc/os-release:
[2026-03-05 02:00:40] NAME="CentOS Linux"
[2026-03-05 02:00:40] VERSION="7 (Core)"
[2026-03-05 02:00:40] ID="centos"
[2026-03-05 02:00:40] ID_LIKE="rhel fedora"
[2026-03-05 02:00:40] VERSION_ID="7"
[2026-03-05 02:00:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-05 02:00:40] ANSI_COLOR="0;31"
[2026-03-05 02:00:40] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-05 02:00:40] HOME_URL="https://www.centos.org/"
[2026-03-05 02:00:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-05 02:00:40] 
[2026-03-05 02:00:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-05 02:00:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-05 02:00:40] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-05 02:00:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-05 02:00:40] 
[2026-03-05 02:00:40] 2026-03-05 01:00:08,690 | INFO     | **************************************
[2026-03-05 02:00:40] 2026-03-05 01:00:09,194 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-05 02:00:40] 2026-03-05 01:00:09,206 | INFO     | sufficient remaining disk space (376348606464 B)
[2026-03-05 02:00:40] 2026-03-05 01:00:09,206 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-05 02:00:40] 2026-03-05 01:00:09,206 | INFO     | current server update state: UPDATING_FINAL
[2026-03-05 02:00:40] 2026-03-05 01:00:09,206 | INFO     | update_server=False
[2026-03-05 02:00:40] 2026-03-05 01:00:09,206 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-05 02:00:40] 2026-03-05 01:00:09,207 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-05 02:00:40] 2026-03-05 01:00:09,207 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-05 02:00:40] 2026-03-05 01:00:09,360 | INFO     | all payload control threads have been joined
[2026-03-05 02:00:40] 2026-03-05 01:00:09,562 | INFO     | all data control threads have been joined
[2026-03-05 02:00:40] 2026-03-05 01:00:10,212 | INFO     | [job] retrieve thread has finished
[2026-03-05 02:00:40] 2026-03-05 01:00:10,227 | INFO     | [job] create_data_payload thread has finished
[2026-03-05 02:00:40] 2026-03-05 01:00:10,234 | INFO     | [payload] validate_pre thread has finished
[2026-03-05 02:00:40] 2026-03-05 01:00:10,254 | WARNING  | process 1492029 can no longer be monitored (due to stat problems) - aborting
[2026-03-05 02:00:40] 2026-03-05 01:00:10,283 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-05 02:00:40] 2026-03-05 01:00:10,319 | INFO     | number of running child processes to parent process 1492029: 1
[2026-03-05 02:00:40] 2026-03-05 01:00:10,319 | INFO     | maximum number of monitored processes: 6
[2026-03-05 02:00:40] 2026-03-05 01:00:10,319 | INFO     | aborting job monitoring since job object (job id=7037673162) has expired
[2026-03-05 02:00:40] 2026-03-05 01:00:10,319 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-05 02:00:40] 2026-03-05 01:00:10,319 | INFO     | will abort loop
[2026-03-05 02:00:40] 2026-03-05 01:00:10,366 | INFO     | [payload] control thread has finished
[2026-03-05 02:00:40] 2026-03-05 01:00:10,426 | INFO     | [data] copytool_in thread has finished
[2026-03-05 02:00:40] 2026-03-05 01:00:10,558 | INFO     | all job control threads have been joined
[2026-03-05 02:00:40] 2026-03-05 01:00:10,568 | INFO     | [data] control thread has finished
[2026-03-05 02:00:40] 2026-03-05 01:00:10,667 | INFO     | [payload] execute_payloads thread has finished
[2026-03-05 02:00:40] 2026-03-05 01:00:10,994 | INFO     | [payload] validate_post thread has finished
[2026-03-05 02:00:40] 2026-03-05 01:00:11,119 | INFO     | [payload] failed_post thread has finished
[2026-03-05 02:00:40] 2026-03-05 01:00:11,212 | INFO     | [data] copytool_out thread has finished
[2026-03-05 02:00:40] 2026-03-05 01:00:11,325 | INFO     | [job] job monitor thread has finished
[2026-03-05 02:00:40] 2026-03-05 01:00:11,559 | INFO     | [job] control thread has finished
[2026-03-05 02:00:40] 2026-03-05 01:00:11,605 | INFO     | [job] validate thread has finished
[2026-03-05 02:00:40] 2026-03-05 01:00:12,102 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-05 02:00:40] 2026-03-05 01:00:13,108 | INFO     | [job] queue monitor thread has finished
[2026-03-05 02:00:40] 2026-03-05 01:00:13,213 | INFO     | [data] queue_monitor thread has finished
[2026-03-05 02:00:40] 2026-03-05 01:00:20,236 | INFO     | job.realtimelogging is not enabled
[2026-03-05 02:00:40] 2026-03-05 01:00:21,242 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-05 02:00:40] 2026-03-05 01:00:32,420 | INFO     | [monitor] cgroup control has ended
[2026-03-05 02:00:40] 2026-03-05 01:00:34,000 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140463352309568)>', '<ExcThread(monitor, started 140462828525312)>']
[2026-03-05 02:00:40] 2026-03-05 01:00:39,002 | INFO     | all workflow threads have been joined
[2026-03-05 02:00:40] 2026-03-05 01:00:39,002 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-05 02:00:40] 2026-03-05 01:00:39,002 | INFO     | traces error code: 0
[2026-03-05 02:00:40] 2026-03-05 01:00:39,002 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-05 02:00:40] 2026-03-05 01:00:40,234 | INFO     | PID=1487606 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-05 02:00:40] 2026-03-05 01:00:40,234 | INFO     | found 0 job(s) in 20 queues
[2026-03-05 02:00:40] 2026-03-05 01:00:40,234 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-05 02:00:40] 2026-03-05 01:00:40,234 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-05 02:00:40] 2026-03-05 01:00:40,234 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-05 02:00:40] 2026-03-05 01:00:40,234 | INFO     | [monitor] control thread has ended
[2026-03-05 02:00:40] 2026-03-05 01:00:40,280 [wrapper] ==== pilot stdout END ====
[2026-03-05 02:00:40] 2026-03-05 01:00:40,283 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-05 02:00:40] 2026-03-05 01:00:40,285 [wrapper] pilotpid: 1487606
[2026-03-05 02:00:40] 2026-03-05 01:00:40,288 [wrapper] Pilot exit status: 0
[2026-03-05 02:00:40] 2026-03-05 01:00:40,296 [wrapper] pandaids: 7037673162
[2026-03-05 02:00:40] 2026-03-05 01:00:40,312 [wrapper] cleanup supervisor_pilot 1497013 1487607
[2026-03-05 02:00:40] 2026-03-05 01:00:40,315 [wrapper] Test setup, not cleaning
[2026-03-05 02:00:40] 2026-03-05 01:00:40,317 [wrapper] apfmon messages muted
[2026-03-05 02:00:40] 2026-03-05 01:00:40,320 [wrapper] ==== wrapper stdout END ====
[2026-03-05 02:00:40] 2026-03-05 01:00:40,322 [wrapper] ==== wrapper stderr END ====
[2026-03-05 02:00:40]  *** Error codes and diagnostics ***
[2026-03-05 02:00:40]     "exeErrorCode": 0,
[2026-03-05 02:00:40]     "exeErrorDiag": "",
[2026-03-05 02:00:40]     "pilotErrorCode": 0,
[2026-03-05 02:00:40]     "pilotErrorDiag": "",
[2026-03-05 02:00:40]  *** Listing of results directory ***
[2026-03-05 02:00:40] total 332588
[2026-03-05 02:00:40] -rw-r--r-- 1 boinc boinc    584627 Mar  4 09:44 pilot3.tar.gz
[2026-03-05 02:00:40] -rw-r--r-- 1 boinc boinc      5111 Mar  4 09:44 queuedata.json
[2026-03-05 02:00:40] -rwx------ 1 boinc boinc     36322 Mar  4 09:44 runpilot2-wrapper.sh
[2026-03-05 02:00:40] -rw-r--r-- 1 boinc boinc       100 Mar  5 00:55 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-05 02:00:40] -rwxr-xr-x 1 boinc boinc      7986 Mar  5 00:55 run_atlas
[2026-03-05 02:00:40] -rw-r--r-- 1 boinc boinc       105 Mar  5 00:55 job.xml
[2026-03-05 02:00:40] -rw-r--r-- 2 boinc boinc 189254423 Mar  5 00:55 EVNT.48700872._000078.pool.root.1
[2026-03-05 02:00:40] -rw-r--r-- 2 boinc boinc    597953 Mar  5 00:55 input.tar.gz
[2026-03-05 02:00:40] -rw-r--r-- 2 boinc boinc     15845 Mar  5 00:55 start_atlas.sh
[2026-03-05 02:00:40] drwxrwx--x 2 boinc boinc      4096 Mar  5 00:55 shared
[2026-03-05 02:00:40] -rw-r--r-- 1 boinc boinc         0 Mar  5 00:55 boinc_setup_complete
[2026-03-05 02:00:40] -rw-r--r-- 1 boinc boinc      6449 Mar  5 00:55 init_data.xml
[2026-03-05 02:00:40] -rw-r--r-- 1 boinc boinc         0 Mar  5 00:55 boinc_lockfile
[2026-03-05 02:00:40] -rw-r--r-- 1 boinc boinc      2550 Mar  5 00:55 pandaJob.out
[2026-03-05 02:00:40] -rw------- 1 boinc boinc    997765 Mar  5 00:55 agis_schedconf.cvmfs.json
[2026-03-05 02:00:40] -rw------- 1 boinc boinc   1521291 Mar  5 00:55 agis_ddmendpoints.agis.ALL.json
[2026-03-05 02:00:40] -rw------- 1 boinc boinc       426 Mar  5 00:55 workernode_map.json
[2026-03-05 02:00:40] drwx------ 5 boinc boinc      4096 Mar  5 00:55 pilot3
[2026-03-05 02:00:40] -rw------- 1 boinc boinc        95 Mar  5 01:59 pilot_heartbeat.json
[2026-03-05 02:00:40] -rw------- 1 boinc boinc 145767869 Mar  5 01:59 HITS.48700874._001998.pool.root.1
[2026-03-05 02:00:40] -rw-r--r-- 1 boinc boinc       529 Mar  5 01:59 boinc_task_state.xml
[2026-03-05 02:00:40] -rw------- 1 boinc boinc      1020 Mar  5 02:00 memory_monitor_summary.json
[2026-03-05 02:00:40] -rw------- 1 boinc boinc    234936 Mar  5 02:00 log.48700874._001998.job.log.tgz.1
[2026-03-05 02:00:40] -rw------- 1 boinc boinc      6307 Mar  5 02:00 heartbeat.json
[2026-03-05 02:00:40] -rw-r--r-- 1 boinc boinc      8192 Mar  5 02:00 boinc_mmap_file
[2026-03-05 02:00:40] -rw-r--r-- 1 boinc boinc        27 Mar  5 02:00 wrapper_checkpoint.txt
[2026-03-05 02:00:40] -rw------- 1 boinc boinc       747 Mar  5 02:00 pilotlog.txt
[2026-03-05 02:00:40] -rw------- 1 boinc boinc    581597 Mar  5 02:00 log.48700874._001998.job.log.1
[2026-03-05 02:00:40] -rw------- 1 boinc boinc       357 Mar  5 02:00 output.list
[2026-03-05 02:00:40] -rw-r--r-- 1 boinc boinc       620 Mar  5 02:00 runtime_log
[2026-03-05 02:00:40] -rw------- 1 boinc boinc    829440 Mar  5 02:00 result.tar.gz
[2026-03-05 02:00:40] -rw-r--r-- 1 boinc boinc      8911 Mar  5 02:00 runtime_log.err
[2026-03-05 02:00:40] -rw------- 1 boinc boinc       660 Mar  5 02:00 l4lNDmZ1wH9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmMlJLDmbpMvWo.diag
[2026-03-05 02:00:40] -rw-r--r-- 1 boinc boinc     11009 Mar  5 02:00 stderr.txt
[2026-03-05 02:00:40] HITS file was successfully produced:
[2026-03-05 02:00:40] -rw------- 1 boinc boinc 145767869 Mar  5 01:59 shared/HITS.pool.root.1
[2026-03-05 02:00:40]  *** Contents of shared directory: ***
[2026-03-05 02:00:40] total 328592
[2026-03-05 02:00:40] -rw-r--r-- 2 boinc boinc 189254423 Mar  5 00:55 ATLAS.root_0
[2026-03-05 02:00:40] -rw-r--r-- 2 boinc boinc    597953 Mar  5 00:55 input.tar.gz
[2026-03-05 02:00:40] -rw-r--r-- 2 boinc boinc     15845 Mar  5 00:55 start_atlas.sh
[2026-03-05 02:00:40] -rw------- 1 boinc boinc 145767869 Mar  5 01:59 HITS.pool.root.1
[2026-03-05 02:00:40] -rw------- 1 boinc boinc    829440 Mar  5 02:00 result.tar.gz
02:00:41 (1483561): run_atlas exited; CPU time 10911.189485
02:00:41 (1483561): called boinc_finish(0)

</stderr_txt>
]]>

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