Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
02:03:20 (883345): wrapper (7.7.26015): starting
02:03:20 (883345): wrapper: running run_atlas (--nthreads 3)
[2026-03-05 02:03:20] Arguments: --nthreads 3
[2026-03-05 02:03:20] Threads: 3
[2026-03-05 02:03:20] Checking for CVMFS
[2026-03-05 02:03:20] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-05 02:03:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-05 02:03:20] Running cvmfs_config stat atlas.cern.ch
[2026-03-05 02:03:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-05 02:03:20] 2.9.2.0 3705770 10686 85156 156897 0 50 35642618 36864001 0 130560 0 3757681 99.974 471407 4867 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-05 02:03:20] CVMFS is ok
[2026-03-05 02:03:20] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-05 02:03:20] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-05 02:03:20] Further information can be found at the LHC@home message board.
[2026-03-05 02:03:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-05 02:03:20] Checking for apptainer binary...
[2026-03-05 02:03:20] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-05 02:03:20] Running /usr/bin/apptainer --version
[2026-03-05 02:03:20] apptainer version 1.4.1-1.1
[2026-03-05 02:03:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-05 02:03:21] atlasA223
[2026-03-05 02:03:21] apptainer works
[2026-03-05 02:03:21] Set ATHENA_PROC_NUMBER=3
[2026-03-05 02:03:21] Set ATHENA_CORE_NUMBER=3
[2026-03-05 02:03:21] Starting ATLAS job with PandaID=7037591503
[2026-03-05 02:03:21] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-05 04:30:46]  *** The last 200 lines of the pilot log: ***
[2026-03-05 04:30:46] 2026-03-05 03:30:00,783 | INFO     | --- collectZombieJob: --- 10, [891807]
[2026-03-05 04:30:46] 2026-03-05 03:30:00,783 | INFO     | zombie collector waiting for pid 891807
[2026-03-05 04:30:46] 2026-03-05 03:30:00,783 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-05 04:30:46] 2026-03-05 03:30:00,783 | INFO     | collected zombie processes
[2026-03-05 04:30:46] 2026-03-05 03:30:00,783 | INFO     | will attempt to kill all subprocesses of pid=891807
[2026-03-05 04:30:46] 2026-03-05 03:30:00,834 | INFO     | process IDs to be killed: [891807] (in reverse order)
[2026-03-05 04:30:46] 2026-03-05 03:30:00,861 | WARNING  | found no corresponding commands to process id(s)
[2026-03-05 04:30:46] 2026-03-05 03:30:00,861 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-05 04:30:46] 2026-03-05 03:30:00,863 | INFO     | did not find any defunct processes belonging to 891807
[2026-03-05 04:30:46] 2026-03-05 03:30:00,864 | INFO     | did not find any defunct processes belonging to 891807
[2026-03-05 04:30:46] 2026-03-05 03:30:00,864 | INFO     | ready for new job
[2026-03-05 04:30:46] 2026-03-05 03:30:00,864 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-05 04:30:46] 2026-03-05 03:30:00,865 | INFO     | **************************************
[2026-03-05 04:30:46] 2026-03-05 03:30:00,865 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-05 04:30:46] 2026-03-05 03:30:00,865 | INFO     | **************************************
[2026-03-05 04:30:46] 2026-03-05 03:30:00,865 | INFO     | 
[2026-03-05 04:30:46] 2026-03-05 03:30:00,865 | INFO     | architecture information:
[2026-03-05 04:30:46] 2026-03-05 03:30:00,866 | INFO     | executing command: cat /etc/os-release
[2026-03-05 04:30:46] 2026-03-05 03:30:00,874 | INFO     | cat /etc/os-release:
[2026-03-05 04:30:46] NAME="CentOS Linux"
[2026-03-05 04:30:46] VERSION="7 (Core)"
[2026-03-05 04:30:46] ID="centos"
[2026-03-05 04:30:46] ID_LIKE="rhel fedora"
[2026-03-05 04:30:46] VERSION_ID="7"
[2026-03-05 04:30:46] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-05 04:30:46] ANSI_COLOR="0;31"
[2026-03-05 04:30:46] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-05 04:30:46] HOME_URL="https://www.centos.org/"
[2026-03-05 04:30:46] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-05 04:30:46] 
[2026-03-05 04:30:46] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-05 04:30:46] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-05 04:30:46] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-05 04:30:46] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-05 04:30:46] 
[2026-03-05 04:30:46] 2026-03-05 03:30:00,874 | INFO     | **************************************
[2026-03-05 04:30:46] 2026-03-05 03:30:01,377 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-05 04:30:46] 2026-03-05 03:30:01,388 | INFO     | sufficient remaining disk space (367879258112 B)
[2026-03-05 04:30:46] 2026-03-05 03:30:01,389 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-05 04:30:46] 2026-03-05 03:30:01,389 | INFO     | current server update state: UPDATING_FINAL
[2026-03-05 04:30:46] 2026-03-05 03:30:01,389 | INFO     | update_server=False
[2026-03-05 04:30:46] 2026-03-05 03:30:01,389 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-05 04:30:46] 2026-03-05 03:30:01,389 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-05 04:30:46] 2026-03-05 03:30:01,533 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-05 04:30:46] 2026-03-05 03:30:01,533 | INFO     | aborting loop
[2026-03-05 04:30:46] 2026-03-05 03:30:01,660 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-05 04:30:46] 2026-03-05 03:30:02,390 | INFO     | [job] queue monitor thread has finished
[2026-03-05 04:30:46] 2026-03-05 03:30:02,395 | INFO     | [job] retrieve thread has finished
[2026-03-05 04:30:46] 2026-03-05 03:30:02,395 | INFO     | all payload control threads have been joined
[2026-03-05 04:30:46] 2026-03-05 03:30:02,415 | INFO     | all data control threads have been joined
[2026-03-05 04:30:46] 2026-03-05 03:30:02,523 | INFO     | all job control threads have been joined
[2026-03-05 04:30:46] 2026-03-05 03:30:02,535 | INFO     | [job] job monitor thread has finished
[2026-03-05 04:30:46] 2026-03-05 03:30:02,969 | INFO     | [job] validate thread has finished
[2026-03-05 04:30:46] 2026-03-05 03:30:03,062 | INFO     | [payload] validate_pre thread has finished
[2026-03-05 04:30:46] 2026-03-05 03:30:03,102 | INFO     | [payload] execute_payloads thread has finished
[2026-03-05 04:30:46] 2026-03-05 03:30:03,133 | INFO     | [job] create_data_payload thread has finished
[2026-03-05 04:30:46] 2026-03-05 03:30:03,235 | INFO     | [data] copytool_in thread has finished
[2026-03-05 04:30:46] 2026-03-05 03:30:03,400 | INFO     | [payload] control thread has finished
[2026-03-05 04:30:46] 2026-03-05 03:30:03,421 | INFO     | [data] control thread has finished
[2026-03-05 04:30:46] 2026-03-05 03:30:03,524 | INFO     | [job] control thread has finished
[2026-03-05 04:30:46] 2026-03-05 03:30:03,630 | INFO     | [payload] validate_post thread has finished
[2026-03-05 04:30:46] 2026-03-05 03:30:03,643 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-05 04:30:46] 2026-03-05 03:30:03,666 | INFO     | [data] copytool_out thread has finished
[2026-03-05 04:30:46] 2026-03-05 03:30:03,750 | INFO     | [payload] failed_post thread has finished
[2026-03-05 04:30:46] 2026-03-05 03:30:07,649 | INFO     | [data] queue_monitor thread has finished
[2026-03-05 04:30:46] 2026-03-05 03:30:11,970 | INFO     | job.realtimelogging is not enabled
[2026-03-05 04:30:46] 2026-03-05 03:30:12,974 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-05 04:30:46] 2026-03-05 03:30:32,245 | INFO     | PID=887386 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-05 04:30:46] 2026-03-05 03:30:32,245 | INFO     | found 0 job(s) in 20 queues
[2026-03-05 04:30:46] 2026-03-05 03:30:32,245 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-05 04:30:46] 2026-03-05 03:30:32,245 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-05 04:30:46] 2026-03-05 03:30:40,423 | INFO     | [monitor] cgroup control has ended
[2026-03-05 04:30:46] 2026-03-05 03:30:41,405 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139902893324096)>', '<ExcThread(monitor, started 139902175930112)>']
[2026-03-05 04:30:46] 2026-03-05 03:30:42,296 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-05 04:30:46] 2026-03-05 03:30:42,296 | INFO     | [monitor] control thread has ended
[2026-03-05 04:30:46] 2026-03-05 03:30:46,431 | INFO     | all workflow threads have been joined
[2026-03-05 04:30:46] 2026-03-05 03:30:46,431 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-05 04:30:46] 2026-03-05 03:30:46,431 | INFO     | traces error code: 0
[2026-03-05 04:30:46] 2026-03-05 03:30:46,432 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-05 04:30:46] 2026-03-05 03:30:46,483 [wrapper] ==== pilot stdout END ====
[2026-03-05 04:30:46] 2026-03-05 03:30:46,486 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-05 04:30:46] 2026-03-05 03:30:46,488 [wrapper] pilotpid: 887386
[2026-03-05 04:30:46] 2026-03-05 03:30:46,490 [wrapper] Pilot exit status: 0
[2026-03-05 04:30:46] 2026-03-05 03:30:46,498 [wrapper] pandaids: 7037591503
[2026-03-05 04:30:46] 2026-03-05 03:30:46,515 [wrapper] cleanup supervisor_pilot  898738 887387
[2026-03-05 04:30:46] 2026-03-05 03:30:46,518 [wrapper] Test setup, not cleaning
[2026-03-05 04:30:46] 2026-03-05 03:30:46,520 [wrapper] apfmon messages muted
[2026-03-05 04:30:46] 2026-03-05 03:30:46,522 [wrapper] ==== wrapper stdout END ====
[2026-03-05 04:30:46] 2026-03-05 03:30:46,525 [wrapper] ==== wrapper stderr END ====
[2026-03-05 04:30:46]  *** Error codes and diagnostics ***
[2026-03-05 04:30:46]     "exeErrorCode": 0,
[2026-03-05 04:30:46]     "exeErrorDiag": "",
[2026-03-05 04:30:46]     "pilotErrorCode": 0,
[2026-03-05 04:30:46]     "pilotErrorDiag": "",
[2026-03-05 04:30:46]  *** Listing of results directory ***
[2026-03-05 04:30:46] total 478044
[2026-03-05 04:30:46] -rw-r--r-- 1 boinc boinc      5111 Mar  4 08:36 queuedata.json
[2026-03-05 04:30:46] -rw-r--r-- 1 boinc boinc    584627 Mar  4 08:36 pilot3.tar.gz
[2026-03-05 04:30:46] -rwx------ 1 boinc boinc     36322 Mar  4 08:37 runpilot2-wrapper.sh
[2026-03-05 04:30:46] -rw-r--r-- 1 boinc boinc       100 Mar  5 02:03 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-05 04:30:46] -rwxr-xr-x 1 boinc boinc      7986 Mar  5 02:03 run_atlas
[2026-03-05 04:30:46] -rw-r--r-- 1 boinc boinc       105 Mar  5 02:03 job.xml
[2026-03-05 04:30:46] -rw-r--r-- 2 boinc boinc 253809562 Mar  5 02:03 EVNT.48454580._000001.pool.root.1
[2026-03-05 04:30:46] -rw-r--r-- 2 boinc boinc    597975 Mar  5 02:03 input.tar.gz
[2026-03-05 04:30:46] -rw-r--r-- 2 boinc boinc     15845 Mar  5 02:03 start_atlas.sh
[2026-03-05 04:30:46] drwxrwx--x 2 boinc boinc      4096 Mar  5 02:03 shared
[2026-03-05 04:30:46] -rw-r--r-- 1 boinc boinc         0 Mar  5 02:03 boinc_setup_complete
[2026-03-05 04:30:46] -rw-r--r-- 1 boinc boinc      6447 Mar  5 02:03 init_data.xml
[2026-03-05 04:30:46] -rw-r--r-- 1 boinc boinc         0 Mar  5 02:03 boinc_lockfile
[2026-03-05 04:30:46] -rw-r--r-- 1 boinc boinc      2622 Mar  5 02:03 pandaJob.out
[2026-03-05 04:30:46] -rw------- 1 boinc boinc    997749 Mar  5 02:03 agis_schedconf.cvmfs.json
[2026-03-05 04:30:46] -rw------- 1 boinc boinc   1521291 Mar  5 02:03 agis_ddmendpoints.agis.ALL.json
[2026-03-05 04:30:46] -rw------- 1 boinc boinc       426 Mar  5 02:03 workernode_map.json
[2026-03-05 04:30:46] drwx------ 5 boinc boinc      4096 Mar  5 02:03 pilot3
[2026-03-05 04:30:46] -rw------- 1 boinc boinc 228678391 Mar  5 04:29 HITS.48844900._000076.pool.root.1
[2026-03-05 04:30:46] -rw-r--r-- 1 boinc boinc       529 Mar  5 04:29 boinc_task_state.xml
[2026-03-05 04:30:46] -rw------- 1 boinc boinc      1029 Mar  5 04:29 memory_monitor_summary.json
[2026-03-05 04:30:46] -rw------- 1 boinc boinc    300424 Mar  5 04:29 log.48844900._000076.job.log.tgz.1
[2026-03-05 04:30:46] -rw------- 1 boinc boinc      6290 Mar  5 04:29 heartbeat.json
[2026-03-05 04:30:46] -rw------- 1 boinc boinc        95 Mar  5 04:30 pilot_heartbeat.json
[2026-03-05 04:30:46] -rw-r--r-- 1 boinc boinc      8192 Mar  5 04:30 boinc_mmap_file
[2026-03-05 04:30:46] -rw-r--r-- 1 boinc boinc        27 Mar  5 04:30 wrapper_checkpoint.txt
[2026-03-05 04:30:46] -rw------- 1 boinc boinc      4819 Mar  5 04:30 pilotlog.txt
[2026-03-05 04:30:46] -rw------- 1 boinc boinc   1253332 Mar  5 04:30 log.48844900._000076.job.log.1
[2026-03-05 04:30:46] -rw------- 1 boinc boinc       357 Mar  5 04:30 output.list
[2026-03-05 04:30:46] -rw-r--r-- 1 boinc boinc       620 Mar  5 04:30 runtime_log
[2026-03-05 04:30:46] -rw------- 1 boinc boinc   1566720 Mar  5 04:30 result.tar.gz
[2026-03-05 04:30:46] -rw-r--r-- 1 boinc boinc      8911 Mar  5 04:30 runtime_log.err
[2026-03-05 04:30:46] -rw------- 1 boinc boinc       660 Mar  5 04:30 YGgNDm9xvH9n9Rq4apOajLDm4fhM0noT9bVooX4SDmEhHLDmqhIRDm.diag
[2026-03-05 04:30:46] -rw-r--r-- 1 boinc boinc     10698 Mar  5 04:30 stderr.txt
[2026-03-05 04:30:46] HITS file was successfully produced:
[2026-03-05 04:30:46] -rw------- 1 boinc boinc 228678391 Mar  5 04:29 shared/HITS.pool.root.1
[2026-03-05 04:30:46]  *** Contents of shared directory: ***
[2026-03-05 04:30:46] total 473324
[2026-03-05 04:30:46] -rw-r--r-- 2 boinc boinc 253809562 Mar  5 02:03 ATLAS.root_0
[2026-03-05 04:30:46] -rw-r--r-- 2 boinc boinc    597975 Mar  5 02:03 input.tar.gz
[2026-03-05 04:30:46] -rw-r--r-- 2 boinc boinc     15845 Mar  5 02:03 start_atlas.sh
[2026-03-05 04:30:46] -rw------- 1 boinc boinc 228678391 Mar  5 04:29 HITS.pool.root.1
[2026-03-05 04:30:46] -rw------- 1 boinc boinc   1566720 Mar  5 04:30 result.tar.gz
04:30:47 (883345): run_atlas exited; CPU time 25521.819132
04:30:47 (883345): called boinc_finish(0)

</stderr_txt>
]]>

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