Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
23:40:49 (1469091): wrapper (7.7.26015): starting
23:40:49 (1469091): wrapper: running run_atlas (--nthreads 3)
[2026-03-04 23:40:49] Arguments: --nthreads 3
[2026-03-04 23:40:49] Threads: 3
[2026-03-04 23:40:49] Checking for CVMFS
[2026-03-04 23:40:49] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-04 23:40:50] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-04 23:40:50] Running cvmfs_config stat atlas.cern.ch
[2026-03-04 23:40:50] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-04 23:40:50] 2.9.2.0 36558 10534 85084 156893 3 50 27857333 36864001 0 130560 0 4029517 99.981 389690 15775 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-04 23:40:50] CVMFS is ok
[2026-03-04 23:40:50] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-04 23:40:50] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-04 23:40:50] Further information can be found at the LHC@home message board.
[2026-03-04 23:40:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-04 23:40:50] Checking for apptainer binary...
[2026-03-04 23:40:50] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-04 23:40:50] Running /usr/bin/apptainer --version
[2026-03-04 23:40:50] apptainer version 1.4.1-1.1
[2026-03-04 23:40:50] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-04 23:40:50] magicA252
[2026-03-04 23:40:50] apptainer works
[2026-03-04 23:40:50] Set ATHENA_PROC_NUMBER=3
[2026-03-04 23:40:50] Set ATHENA_CORE_NUMBER=3
[2026-03-04 23:40:50] Starting ATLAS job with PandaID=7037261122
[2026-03-04 23:40:50] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-05 00:55:11]  *** The last 200 lines of the pilot log: ***
[2026-03-05 00:55:11] 2026-03-04 23:54:37,771 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-05 00:55:11] 2026-03-04 23:54:37,771 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-05 00:55:11] 2026-03-04 23:54:37,771 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-05 00:55:11] 2026-03-04 23:54:37,771 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-05 00:55:11] 2026-03-04 23:54:37,771 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-05 00:55:11] 2026-03-04 23:54:37,771 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-05 00:55:11] 2026-03-04 23:54:37,771 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-05 00:55:11] 2026-03-04 23:54:37,771 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-05 00:55:11] 2026-03-04 23:54:37,771 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-05 00:55:11] 2026-03-04 23:54:37,771 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-05 00:55:11] 2026-03-04 23:54:37,771 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-05 00:55:11] 2026-03-04 23:54:37,771 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-05 00:55:11] 2026-03-04 23:54:37,771 | INFO     | job 7037261122 has completed (purged errors)
[2026-03-05 00:55:11] 2026-03-04 23:54:37,771 | INFO     | overall cleanup function is called
[2026-03-05 00:55:11] 2026-03-04 23:54:38,778 | INFO     | --- collectZombieJob: --- 10, [1477566]
[2026-03-05 00:55:11] 2026-03-04 23:54:38,778 | INFO     | zombie collector waiting for pid 1477566
[2026-03-05 00:55:11] 2026-03-04 23:54:38,778 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-05 00:55:11] 2026-03-04 23:54:38,778 | INFO     | collected zombie processes
[2026-03-05 00:55:11] 2026-03-04 23:54:38,778 | INFO     | will attempt to kill all subprocesses of pid=1477566
[2026-03-05 00:55:11] 2026-03-04 23:54:38,819 | INFO     | process IDs to be killed: [1477566] (in reverse order)
[2026-03-05 00:55:11] 2026-03-04 23:54:38,845 | WARNING  | found no corresponding commands to process id(s)
[2026-03-05 00:55:11] 2026-03-04 23:54:38,845 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-05 00:55:11] 2026-03-04 23:54:38,846 | INFO     | did not find any defunct processes belonging to 1477566
[2026-03-05 00:55:11] 2026-03-04 23:54:38,847 | INFO     | did not find any defunct processes belonging to 1477566
[2026-03-05 00:55:11] 2026-03-04 23:54:38,847 | INFO     | ready for new job
[2026-03-05 00:55:11] 2026-03-04 23:54:38,847 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-05 00:55:11] 2026-03-04 23:54:38,848 | INFO     | **************************************
[2026-03-05 00:55:11] 2026-03-04 23:54:38,848 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-05 00:55:11] 2026-03-04 23:54:38,848 | INFO     | **************************************
[2026-03-05 00:55:11] 2026-03-04 23:54:38,848 | INFO     | 
[2026-03-05 00:55:11] 2026-03-04 23:54:38,848 | INFO     | architecture information:
[2026-03-05 00:55:11] 2026-03-04 23:54:38,849 | INFO     | executing command: cat /etc/os-release
[2026-03-05 00:55:11] 2026-03-04 23:54:38,859 | INFO     | cat /etc/os-release:
[2026-03-05 00:55:11] NAME="CentOS Linux"
[2026-03-05 00:55:11] VERSION="7 (Core)"
[2026-03-05 00:55:11] ID="centos"
[2026-03-05 00:55:11] ID_LIKE="rhel fedora"
[2026-03-05 00:55:11] VERSION_ID="7"
[2026-03-05 00:55:11] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-05 00:55:11] ANSI_COLOR="0;31"
[2026-03-05 00:55:11] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-05 00:55:11] HOME_URL="https://www.centos.org/"
[2026-03-05 00:55:11] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-05 00:55:11] 
[2026-03-05 00:55:11] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-05 00:55:11] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-05 00:55:11] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-05 00:55:11] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-05 00:55:11] 
[2026-03-05 00:55:11] 2026-03-04 23:54:38,859 | INFO     | **************************************
[2026-03-05 00:55:11] 2026-03-04 23:54:39,362 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-05 00:55:11] 2026-03-04 23:54:39,374 | INFO     | sufficient remaining disk space (376252137472 B)
[2026-03-05 00:55:11] 2026-03-04 23:54:39,374 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-05 00:55:11] 2026-03-04 23:54:39,374 | INFO     | current server update state: UPDATING_FINAL
[2026-03-05 00:55:11] 2026-03-04 23:54:39,375 | INFO     | update_server=False
[2026-03-05 00:55:11] 2026-03-04 23:54:39,375 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-05 00:55:11] 2026-03-04 23:54:39,375 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-05 00:55:11] 2026-03-04 23:54:39,577 | INFO     | all data control threads have been joined
[2026-03-05 00:55:11] 2026-03-04 23:54:39,898 | INFO     | all job control threads have been joined
[2026-03-05 00:55:11] 2026-03-04 23:54:40,341 | INFO     | all payload control threads have been joined
[2026-03-05 00:55:11] 2026-03-04 23:54:40,375 | INFO     | [job] retrieve thread has finished
[2026-03-05 00:55:11] 2026-03-04 23:54:40,380 | INFO     | [job] queue monitor thread has finished
[2026-03-05 00:55:11] 2026-03-04 23:54:40,400 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-05 00:55:11] 2026-03-04 23:54:40,579 | INFO     | [data] control thread has finished
[2026-03-05 00:55:11] 2026-03-04 23:54:40,679 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-05 00:55:11] 2026-03-04 23:54:40,696 | INFO     | [payload] validate_post thread has finished
[2026-03-05 00:55:11] 2026-03-04 23:54:40,903 | INFO     | [job] control thread has finished
[2026-03-05 00:55:11] 2026-03-04 23:54:41,347 | INFO     | [payload] control thread has finished
[2026-03-05 00:55:11] 2026-03-04 23:54:41,400 | INFO     | [job] create_data_payload thread has finished
[2026-03-05 00:55:11] 2026-03-04 23:54:41,402 | INFO     | [job] validate thread has finished
[2026-03-05 00:55:11] 2026-03-04 23:54:41,463 | INFO     | [payload] failed_post thread has finished
[2026-03-05 00:55:11] 2026-03-04 23:54:41,585 | INFO     | [data] copytool_in thread has finished
[2026-03-05 00:55:11] 2026-03-04 23:54:41,591 | INFO     | [payload] validate_pre thread has finished
[2026-03-05 00:55:11] 2026-03-04 23:54:41,626 | WARNING  | process 1477566 can no longer be monitored (due to stat problems) - aborting
[2026-03-05 00:55:11] 2026-03-04 23:54:41,654 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-05 00:55:11] 2026-03-04 23:54:41,689 | INFO     | number of running child processes to parent process 1477566: 1
[2026-03-05 00:55:11] 2026-03-04 23:54:41,689 | INFO     | maximum number of monitored processes: 6
[2026-03-05 00:55:11] 2026-03-04 23:54:41,689 | INFO     | aborting job monitoring since job object (job id=7037261122) has expired
[2026-03-05 00:55:11] 2026-03-04 23:54:41,689 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-05 00:55:11] 2026-03-04 23:54:41,689 | INFO     | will abort loop
[2026-03-05 00:55:11] 2026-03-04 23:54:41,872 | INFO     | [payload] execute_payloads thread has finished
[2026-03-05 00:55:11] 2026-03-04 23:54:42,048 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-05 00:55:11] 2026-03-04 23:54:42,685 | INFO     | [data] copytool_out thread has finished
[2026-03-05 00:55:11] 2026-03-04 23:54:42,694 | INFO     | [job] job monitor thread has finished
[2026-03-05 00:55:11] 2026-03-04 23:54:46,055 | INFO     | [data] queue_monitor thread has finished
[2026-03-05 00:55:11] 2026-03-04 23:55:06,221 | INFO     | [monitor] cgroup control has ended
[2026-03-05 00:55:11] 2026-03-04 23:55:06,842 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139986671028032)>', '<ExcThread(monitor, started 139985659356928)>']
[2026-03-05 00:55:11] 2026-03-04 23:55:10,173 | INFO     | PID=1473137 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-05 00:55:11] 2026-03-04 23:55:10,174 | INFO     | found 0 job(s) in 20 queues
[2026-03-05 00:55:11] 2026-03-04 23:55:10,174 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-05 00:55:11] 2026-03-04 23:55:10,174 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-05 00:55:11] 2026-03-04 23:55:10,174 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-05 00:55:11] 2026-03-04 23:55:10,174 | INFO     | [monitor] control thread has ended
[2026-03-05 00:55:11] 2026-03-04 23:55:11,845 | INFO     | all workflow threads have been joined
[2026-03-05 00:55:11] 2026-03-04 23:55:11,845 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-05 00:55:11] 2026-03-04 23:55:11,846 | INFO     | traces error code: 0
[2026-03-05 00:55:11] 2026-03-04 23:55:11,846 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-05 00:55:11] 2026-03-04 23:55:11,896 [wrapper] ==== pilot stdout END ====
[2026-03-05 00:55:11] 2026-03-04 23:55:11,899 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-05 00:55:11] 2026-03-04 23:55:11,901 [wrapper] pilotpid: 1473137
[2026-03-05 00:55:11] 2026-03-04 23:55:11,904 [wrapper] Pilot exit status: 0
[2026-03-05 00:55:11] 2026-03-04 23:55:11,912 [wrapper] pandaids: 7037261122
[2026-03-05 00:55:11] 2026-03-04 23:55:11,928 [wrapper] cleanup supervisor_pilot 1483114 1473138
[2026-03-05 00:55:11] 2026-03-04 23:55:11,930 [wrapper] Test setup, not cleaning
[2026-03-05 00:55:11] 2026-03-04 23:55:11,933 [wrapper] apfmon messages muted
[2026-03-05 00:55:11] 2026-03-04 23:55:11,935 [wrapper] ==== wrapper stdout END ====
[2026-03-05 00:55:11] 2026-03-04 23:55:11,938 [wrapper] ==== wrapper stderr END ====
[2026-03-05 00:55:11]  *** Error codes and diagnostics ***
[2026-03-05 00:55:11]     "exeErrorCode": 0,
[2026-03-05 00:55:11]     "exeErrorDiag": "",
[2026-03-05 00:55:11]     "pilotErrorCode": 0,
[2026-03-05 00:55:11]     "pilotErrorDiag": "",
[2026-03-05 00:55:11]  *** Listing of results directory ***
[2026-03-05 00:55:11] total 436540
[2026-03-05 00:55:11] -rw-r--r-- 1 boinc boinc    584627 Mar  4 07:10 pilot3.tar.gz
[2026-03-05 00:55:11] -rwx------ 1 boinc boinc     36322 Mar  4 07:10 runpilot2-wrapper.sh
[2026-03-05 00:55:11] -rw-r--r-- 1 boinc boinc      5111 Mar  4 07:11 queuedata.json
[2026-03-05 00:55:11] -rw-r--r-- 1 boinc boinc       100 Mar  4 23:40 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-05 00:55:11] -rwxr-xr-x 1 boinc boinc      7986 Mar  4 23:40 run_atlas
[2026-03-05 00:55:11] -rw-r--r-- 1 boinc boinc       105 Mar  4 23:40 job.xml
[2026-03-05 00:55:11] -rw-r--r-- 2 boinc boinc 262306054 Mar  4 23:40 EVNT.48564773._000007.pool.root.1
[2026-03-05 00:55:11] -rw-r--r-- 2 boinc boinc    597952 Mar  4 23:40 input.tar.gz
[2026-03-05 00:55:11] -rw-r--r-- 2 boinc boinc     15845 Mar  4 23:40 start_atlas.sh
[2026-03-05 00:55:11] drwxrwx--x 2 boinc boinc      4096 Mar  4 23:40 shared
[2026-03-05 00:55:11] -rw-r--r-- 1 boinc boinc         0 Mar  4 23:40 boinc_setup_complete
[2026-03-05 00:55:11] -rw-r--r-- 1 boinc boinc      6449 Mar  4 23:40 init_data.xml
[2026-03-05 00:55:11] -rw-r--r-- 1 boinc boinc         0 Mar  4 23:40 boinc_lockfile
[2026-03-05 00:55:11] -rw-r--r-- 1 boinc boinc      2551 Mar  4 23:40 pandaJob.out
[2026-03-05 00:55:11] -rw------- 1 boinc boinc    997757 Mar  4 23:40 agis_schedconf.cvmfs.json
[2026-03-05 00:55:11] -rw------- 1 boinc boinc   1521291 Mar  4 23:40 agis_ddmendpoints.agis.ALL.json
[2026-03-05 00:55:11] -rw------- 1 boinc boinc       426 Mar  4 23:41 workernode_map.json
[2026-03-05 00:55:11] drwx------ 5 boinc boinc      4096 Mar  4 23:41 pilot3
[2026-03-05 00:55:11] -rw------- 1 boinc boinc 178979526 Mar  5 00:54 HITS.48937823._000160.pool.root.1
[2026-03-05 00:55:11] -rw------- 1 boinc boinc        95 Mar  5 00:54 pilot_heartbeat.json
[2026-03-05 00:55:11] -rw-r--r-- 1 boinc boinc       529 Mar  5 00:54 boinc_task_state.xml
[2026-03-05 00:55:11] -rw------- 1 boinc boinc      1015 Mar  5 00:54 memory_monitor_summary.json
[2026-03-05 00:55:11] -rw------- 1 boinc boinc    245890 Mar  5 00:54 log.48937823._000160.job.log.tgz.1
[2026-03-05 00:55:11] -rw------- 1 boinc boinc      6301 Mar  5 00:54 heartbeat.json
[2026-03-05 00:55:11] -rw-r--r-- 1 boinc boinc      8192 Mar  5 00:55 boinc_mmap_file
[2026-03-05 00:55:11] -rw-r--r-- 1 boinc boinc        27 Mar  5 00:55 wrapper_checkpoint.txt
[2026-03-05 00:55:11] -rw------- 1 boinc boinc      5272 Mar  5 00:55 pilotlog.txt
[2026-03-05 00:55:11] -rw------- 1 boinc boinc    654056 Mar  5 00:55 log.48937823._000160.job.log.1
[2026-03-05 00:55:11] -rw------- 1 boinc boinc       357 Mar  5 00:55 output.list
[2026-03-05 00:55:11] -rw-r--r-- 1 boinc boinc       620 Mar  5 00:55 runtime_log
[2026-03-05 00:55:11] -rw------- 1 boinc boinc    921600 Mar  5 00:55 result.tar.gz
[2026-03-05 00:55:11] -rw-r--r-- 1 boinc boinc      8911 Mar  5 00:55 runtime_log.err
[2026-03-05 00:55:11] -rw------- 1 boinc boinc       660 Mar  5 00:55 P5XKDmscuH9n9Rq4apOajLDm4fhM0noT9bVooX4SDmnZHLDmOG0hJn.diag
[2026-03-05 00:55:11] -rw-r--r-- 1 boinc boinc     12668 Mar  5 00:55 stderr.txt
[2026-03-05 00:55:11] HITS file was successfully produced:
[2026-03-05 00:55:11] -rw------- 1 boinc boinc 178979526 Mar  5 00:54 shared/HITS.pool.root.1
[2026-03-05 00:55:11]  *** Contents of shared directory: ***
[2026-03-05 00:55:11] total 432452
[2026-03-05 00:55:11] -rw-r--r-- 2 boinc boinc 262306054 Mar  4 23:40 ATLAS.root_0
[2026-03-05 00:55:11] -rw-r--r-- 2 boinc boinc    597952 Mar  4 23:40 input.tar.gz
[2026-03-05 00:55:11] -rw-r--r-- 2 boinc boinc     15845 Mar  4 23:40 start_atlas.sh
[2026-03-05 00:55:11] -rw------- 1 boinc boinc 178979526 Mar  5 00:54 HITS.pool.root.1
[2026-03-05 00:55:11] -rw------- 1 boinc boinc    921600 Mar  5 00:55 result.tar.gz
00:55:13 (1469091): run_atlas exited; CPU time 12531.777063
00:55:13 (1469091): called boinc_finish(0)

</stderr_txt>
]]>

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