Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
12:34:01 (1771704): wrapper (7.7.26015): starting
12:34:01 (1771704): wrapper: running run_atlas (--nthreads 4)
[2026-03-05 12:34:01] Arguments: --nthreads 4
[2026-03-05 12:34:01] Threads: 4
[2026-03-05 12:34:01] Checking for CVMFS
[2026-03-05 12:34:01] No cvmfs_config command found, will try listing directly
[2026-03-05 12:34:01] CVMFS is ok
[2026-03-05 12:34:01] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-05 12:34:01] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-05 12:34:01] Further information can be found at the LHC@home message board.
[2026-03-05 12:34:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-05 12:34:01] Checking for apptainer binary...
[2026-03-05 12:34:01] which: no apptainer in ((null))
[2026-03-05 12:34:01] apptainer is not installed, using version from CVMFS
[2026-03-05 12:34:01] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-05 12:34:01] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot164/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut20.grid.cesnet.cz
[2026-03-05 12:34:01] apptainer works
[2026-03-05 12:34:01] Set ATHENA_PROC_NUMBER=4
[2026-03-05 12:34:01] Set ATHENA_CORE_NUMBER=4
[2026-03-05 12:34:01] Starting ATLAS job with PandaID=7037260612
[2026-03-05 12:34:01] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot164/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-05 13:53:29]  *** The last 200 lines of the pilot log: ***
[2026-03-05 13:53:29]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-03-05 13:53:29]  is_altstaged=None
[2026-03-05 13:53:29]  is_tar=False
[2026-03-05 13:53:29]  lfn=log.48937817._000012.job.log.tgz.1
[2026-03-05 13:53:29]  mtime=0
[2026-03-05 13:53:29]  protocol_id=None
[2026-03-05 13:53:29]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-03-05 13:53:29]  replicas=None
[2026-03-05 13:53:29]  scope=mc23_13p6TeV
[2026-03-05 13:53:29]  status=None
[2026-03-05 13:53:29]  status_code=0
[2026-03-05 13:53:29]  storage_token=
[2026-03-05 13:53:29]  surl=/var/lib/boinc/var/slot164/slots/0/PanDA_Pilot-7037260612/log.48937817._000012.job.log.tgz.1
[2026-03-05 13:53:29]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/00/bc/log.48937817._000012.job.log.tgz.1
[2026-03-05 13:53:29]  workdir=None
[2026-03-05 13:53:29] ]
[2026-03-05 13:53:29] 2026-03-05 12:52:41,321 | INFO     | transferring file log.48937817._000012.job.log.tgz.1 from /var/lib/boinc/var/slot164/slots/0/PanDA_Pilot-7037260612/log.48937817._000012.job.log.tgz.1 to /var/lib/
[2026-03-05 13:53:29] 2026-03-05 12:52:41,321 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/var/slot164/slots/0/PanDA_Pilot-7037260612/log.48937817._000012.job.log.tgz.1 /var/lib/boinc/var/slot164/slots/0/
[2026-03-05 13:53:29] 2026-03-05 12:52:41,338 | INFO     | adding to output.list: log.48937817._000012.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/00/bc/log.48937817._000012.job.log.tg
[2026-03-05 13:53:29] 2026-03-05 12:52:41,339 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-05 13:53:29] 2026-03-05 12:52:41,339 | INFO     | summary of transferred files:
[2026-03-05 13:53:29] 2026-03-05 12:52:41,339 | INFO     |  -- lfn=log.48937817._000012.job.log.tgz.1, status_code=0, status=transferred
[2026-03-05 13:53:29] 2026-03-05 12:52:41,339 | INFO     | stage-out finished correctly
[2026-03-05 13:53:29] 2026-03-05 12:52:41,662 | INFO     | monitor loop #339: job 0:7037260612 is in state 'finished'
[2026-03-05 13:53:29] 2026-03-05 12:52:41,662 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-03-05 13:53:29] 2026-03-05 12:52:42,598 | INFO     | time since job start (4707s) is within the limit (349056.0s)
[2026-03-05 13:53:29] 2026-03-05 12:52:42,785 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-05 13:53:29] 2026-03-05 12:52:44,165 | INFO     | monitor loop #340: job 0:7037260612 is in state 'finished'
[2026-03-05 13:53:29] 2026-03-05 12:52:44,165 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-03-05 13:53:29] 2026-03-05 12:52:44,182 | INFO     | job 7037260612 has state=finished
[2026-03-05 13:53:29] 2026-03-05 12:52:44,182 | INFO     | preparing for final server update for job 7037260612 in state='finished'
[2026-03-05 13:53:29] 2026-03-05 12:52:44,182 | INFO     | reading metadata from: /var/lib/boinc/var/slot164/slots/0/PanDA_Pilot-7037260612/jobReport.json
[2026-03-05 13:53:29] 2026-03-05 12:52:44,184 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot164/slots/0/workernode_map.json
[2026-03-05 13:53:29] 2026-03-05 12:52:44,184 | INFO     | this job has now completed (state=finished)
[2026-03-05 13:53:29] 2026-03-05 12:52:44,184 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-05 13:53:29] 2026-03-05 12:52:44,184 | INFO     | log transfer has been attempted: DONE
[2026-03-05 13:53:29] 2026-03-05 12:52:44,184 | INFO     | job 7037260612 has finished - writing final server update
[2026-03-05 13:53:29] 2026-03-05 12:52:44,184 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_546778/.job.ad'
[2026-03-05 13:53:29] 2026-03-05 12:52:44,184 | INFO     | total number of processed events: 400 (read)
[2026-03-05 13:53:29] 2026-03-05 12:52:44,203 | INFO     | using path: /var/lib/boinc/var/slot164/slots/0/PanDA_Pilot-7037260612/memory_monitor_summary.json (trf name=prmon)
[2026-03-05 13:53:29] 2026-03-05 12:52:44,204 | INFO     | extracted standard info from prmon json
[2026-03-05 13:53:29] 2026-03-05 12:52:44,204 | INFO     | extracted standard memory fields from prmon json
[2026-03-05 13:53:29] 2026-03-05 12:52:44,204 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-05 13:53:29] 2026-03-05 12:52:44,204 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-05 13:53:29] 2026-03-05 12:52:44,204 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-05 13:53:29] 2026-03-05 12:52:44,205 | INFO     | fitting pss+swap vs Time
[2026-03-05 13:53:29] 2026-03-05 12:52:44,205 | INFO     | sum of square deviations: 106336877.5
[2026-03-05 13:53:29] 2026-03-05 12:52:44,205 | INFO     | sum of deviations: -65949204.49999998
[2026-03-05 13:53:29] 2026-03-05 12:52:44,206 | INFO     | mean x: 1772712885.5
[2026-03-05 13:53:29] 2026-03-05 12:52:44,206 | INFO     | mean y: 2349261.9571428574
[2026-03-05 13:53:29] 2026-03-05 12:52:44,206 | INFO     | intersect: 1101770341.0237586
[2026-03-05 13:53:29] 2026-03-05 12:52:44,206 | INFO     | chi2: 0.0004727493635145222
[2026-03-05 13:53:29] 2026-03-05 12:52:44,206 | INFO     | current memory leak: -0.62 B/s (using 70 data points, chi2=0.00)
[2026-03-05 13:53:29] 2026-03-05 12:52:44,206 | INFO     | could have reported an average CPU frequency of 3558 MHz (6 samples)
[2026-03-05 13:53:29] 2026-03-05 12:52:44,206 | INFO     | ..............................
[2026-03-05 13:53:29] 2026-03-05 12:52:44,206 | INFO     | . Timing measurements:
[2026-03-05 13:53:29] 2026-03-05 12:52:44,206 | INFO     | . get job = 0 s
[2026-03-05 13:53:29] 2026-03-05 12:52:44,206 | INFO     | . initial setup = 5 s
[2026-03-05 13:53:29] 2026-03-05 12:52:44,206 | INFO     | . payload setup = 5 s
[2026-03-05 13:53:29] 2026-03-05 12:52:44,206 | INFO     | . stage-in = 0 s
[2026-03-05 13:53:29] 2026-03-05 12:52:44,206 | INFO     | . payload execution = 4685 s
[2026-03-05 13:53:29] 2026-03-05 12:52:44,206 | INFO     | . stage-out = 0 s
[2026-03-05 13:53:29] 2026-03-05 12:52:44,206 | INFO     | . log creation = 0 s
[2026-03-05 13:53:29] 2026-03-05 12:52:44,206 | INFO     | ..............................
[2026-03-05 13:53:29] 2026-03-05 12:52:44,497 | INFO     | 
[2026-03-05 13:53:29] 2026-03-05 12:52:44,497 | INFO     | job summary report
[2026-03-05 13:53:29] 2026-03-05 12:52:44,497 | INFO     | --------------------------------------------------
[2026-03-05 13:53:29] 2026-03-05 12:52:44,497 | INFO     | PanDA job id: 7037260612
[2026-03-05 13:53:29] 2026-03-05 12:52:44,497 | INFO     | task id: 48937817
[2026-03-05 13:53:29] 2026-03-05 12:52:44,497 | INFO     | errors: (none)
[2026-03-05 13:53:29] 2026-03-05 12:52:44,497 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-05 13:53:29] 2026-03-05 12:52:44,497 | INFO     | pilot state: finished 
[2026-03-05 13:53:29] 2026-03-05 12:52:44,497 | INFO     | transexitcode: 0
[2026-03-05 13:53:29] 2026-03-05 12:52:44,497 | INFO     | exeerrorcode: 0
[2026-03-05 13:53:29] 2026-03-05 12:52:44,498 | INFO     | exeerrordiag: 
[2026-03-05 13:53:29] 2026-03-05 12:52:44,498 | INFO     | exitcode: 0
[2026-03-05 13:53:29] 2026-03-05 12:52:44,498 | INFO     | exitmsg: OK
[2026-03-05 13:53:29] 2026-03-05 12:52:44,498 | INFO     | cpuconsumptiontime: 17928 s
[2026-03-05 13:53:29] 2026-03-05 12:52:44,498 | INFO     | nevents: 400
[2026-03-05 13:53:29] 2026-03-05 12:52:44,498 | INFO     | neventsw: 0
[2026-03-05 13:53:29] 2026-03-05 12:52:44,498 | INFO     | pid: 1793613
[2026-03-05 13:53:29] 2026-03-05 12:52:44,498 | INFO     | pgrp: 1793613
[2026-03-05 13:53:29] 2026-03-05 12:52:44,498 | INFO     | corecount: 4
[2026-03-05 13:53:29] 2026-03-05 12:52:44,498 | INFO     | event service: False
[2026-03-05 13:53:29] 2026-03-05 12:52:44,498 | INFO     | sizes: {0: 2295795, 11: 2295795, 4694: 2322084, 4695: 2331106, 4697: 2331162, 4698: 2331356}
[2026-03-05 13:53:29] 2026-03-05 12:52:44,498 | INFO     | --------------------------------------------------
[2026-03-05 13:53:29] 2026-03-05 12:52:44,498 | INFO     | 
[2026-03-05 13:53:29] 2026-03-05 12:52:44,498 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot164/slots/0
[2026-03-05 13:53:29] 2026-03-05 12:52:44,519 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-05 13:53:29] 2026-03-05 12:52:44,519 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-05 13:53:29] 2026-03-05 12:52:44,519 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-05 13:53:29] 2026-03-05 12:52:44,520 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-05 13:53:29] 2026-03-05 12:52:44,520 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-05 13:53:29] 2026-03-05 12:52:44,520 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-05 13:53:29] 2026-03-05 12:52:44,520 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-05 13:53:29] 2026-03-05 12:52:44,520 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-05 13:53:29] 2026-03-05 12:52:44,520 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-05 13:53:29] 2026-03-05 12:52:44,520 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-05 13:53:29] 2026-03-05 12:52:44,520 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-05 13:53:29] 2026-03-05 12:52:44,520 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-05 13:53:29] 2026-03-05 12:52:44,520 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-05 13:53:29] 2026-03-05 12:52:44,520 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-05 13:53:29] 2026-03-05 12:52:44,520 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-05 13:53:29] 2026-03-05 12:52:44,520 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-05 13:53:29] 2026-03-05 12:52:44,520 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-05 13:53:29] 2026-03-05 12:52:44,520 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-05 13:53:29] 2026-03-05 12:52:44,520 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-05 13:53:29] 2026-03-05 12:52:44,520 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-05 13:53:29] 2026-03-05 12:52:44,520 | INFO     | job 7037260612 has completed (purged errors)
[2026-03-05 13:53:29] 2026-03-05 12:52:44,520 | INFO     | overall cleanup function is called
[2026-03-05 13:53:29] 2026-03-05 12:52:45,527 | INFO     | --- collectZombieJob: --- 10, [1793613]
[2026-03-05 13:53:29] 2026-03-05 12:52:45,527 | INFO     | zombie collector waiting for pid 1793613
[2026-03-05 13:53:29] 2026-03-05 12:52:45,527 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-05 13:53:29] 2026-03-05 12:52:45,527 | INFO     | collected zombie processes
[2026-03-05 13:53:29] 2026-03-05 12:52:45,527 | INFO     | will attempt to kill all subprocesses of pid=1793613
[2026-03-05 13:53:29] 2026-03-05 12:52:46,055 | INFO     | process IDs to be killed: [1793613] (in reverse order)
[2026-03-05 13:53:29] 2026-03-05 12:52:46,285 | WARNING  | found no corresponding commands to process id(s)
[2026-03-05 13:53:29] 2026-03-05 12:52:46,285 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-05 13:53:29] 2026-03-05 12:52:46,318 | INFO     | did not find any defunct processes belonging to 1793613
[2026-03-05 13:53:29] 2026-03-05 12:52:46,349 | INFO     | did not find any defunct processes belonging to 1793613
[2026-03-05 13:53:29] 2026-03-05 12:52:46,349 | INFO     | ready for new job
[2026-03-05 13:53:29] 2026-03-05 12:52:46,349 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-05 13:53:29] 2026-03-05 12:52:46,350 | INFO     | **************************************
[2026-03-05 13:53:29] 2026-03-05 12:52:46,350 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-05 13:53:29] 2026-03-05 12:52:46,351 | INFO     | **************************************
[2026-03-05 13:53:29] 2026-03-05 12:52:46,351 | INFO     | 
[2026-03-05 13:53:29] 2026-03-05 12:52:46,356 | INFO     | architecture information:
[2026-03-05 13:53:29] 2026-03-05 12:52:46,357 | INFO     | executing command: cat /etc/os-release
[2026-03-05 13:53:29] 2026-03-05 12:52:46,370 | INFO     | cat /etc/os-release:
[2026-03-05 13:53:29] NAME="CentOS Linux"
[2026-03-05 13:53:29] VERSION="7 (Core)"
[2026-03-05 13:53:29] ID="centos"
[2026-03-05 13:53:29] ID_LIKE="rhel fedora"
[2026-03-05 13:53:29] VERSION_ID="7"
[2026-03-05 13:53:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-05 13:53:29] ANSI_COLOR="0;31"
[2026-03-05 13:53:29] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-05 13:53:29] HOME_URL="https://www.centos.org/"
[2026-03-05 13:53:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-05 13:53:29] 
[2026-03-05 13:53:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-05 13:53:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-05 13:53:29] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-05 13:53:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-05 13:53:29] 
[2026-03-05 13:53:29] 2026-03-05 12:52:46,370 | INFO     | **************************************
[2026-03-05 13:53:29] 2026-03-05 12:52:46,872 | INFO     | executing command: df -mP /var/lib/boinc/var/slot164/slots/0
[2026-03-05 13:53:29] 2026-03-05 12:52:46,888 | INFO     | sufficient remaining disk space (21137195008 B)
[2026-03-05 13:53:29] 2026-03-05 12:52:46,889 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-05 13:53:29] 2026-03-05 12:52:46,889 | INFO     | current server update state: UPDATING_FINAL
[2026-03-05 13:53:29] 2026-03-05 12:52:46,889 | INFO     | update_server=False
[2026-03-05 13:53:29] 2026-03-05 12:52:46,889 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-05 13:53:29] 2026-03-05 12:52:46,898 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-05 13:53:29] 2026-03-05 12:52:46,904 | INFO     | all data control threads have been joined
[2026-03-05 13:53:29] 2026-03-05 12:52:47,372 | INFO     | all job control threads have been joined
[2026-03-05 13:53:29] 2026-03-05 12:52:47,673 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-05 13:53:29] 2026-03-05 12:52:47,673 | INFO     | aborting loop
[2026-03-05 13:53:29] 2026-03-05 12:52:47,894 | INFO     | [job] retrieve thread has finished
[2026-03-05 13:53:29] 2026-03-05 12:52:47,906 | INFO     | [data] control thread has finished
[2026-03-05 13:53:29] 2026-03-05 12:52:47,938 | INFO     | [payload] validate_post thread has finished
[2026-03-05 13:53:29] 2026-03-05 12:52:48,281 | INFO     | all payload control threads have been joined
[2026-03-05 13:53:29] 2026-03-05 12:52:48,376 | INFO     | [job] control thread has finished
[2026-03-05 13:53:29] 2026-03-05 12:52:48,507 | INFO     | [job] validate thread has finished
[2026-03-05 13:53:29] 2026-03-05 12:52:48,516 | INFO     | [job] create_data_payload thread has finished
[2026-03-05 13:53:29] 2026-03-05 12:52:48,678 | INFO     | [job] job monitor thread has finished
[2026-03-05 13:53:29] 2026-03-05 12:52:48,685 | INFO     | [payload] validate_pre thread has finished
[2026-03-05 13:53:29] 2026-03-05 12:52:48,838 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-05 13:53:29] 2026-03-05 12:52:48,900 | INFO     | [payload] execute_payloads thread has finished
[2026-03-05 13:53:29] 2026-03-05 12:52:48,903 | INFO     | [data] copytool_out thread has finished
[2026-03-05 13:53:29] 2026-03-05 12:52:48,911 | INFO     | [data] copytool_in thread has finished
[2026-03-05 13:53:29] 2026-03-05 12:52:48,951 | INFO     | [payload] failed_post thread has finished
[2026-03-05 13:53:29] 2026-03-05 12:52:49,265 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-05 13:53:29] 2026-03-05 12:52:49,286 | INFO     | [payload] control thread has finished
[2026-03-05 13:53:29] 2026-03-05 12:52:50,270 | INFO     | [job] queue monitor thread has finished
[2026-03-05 13:53:29] 2026-03-05 12:52:52,843 | INFO     | [data] queue_monitor thread has finished
[2026-03-05 13:53:29] 2026-03-05 12:52:57,029 | INFO     | job.realtimelogging is not enabled
[2026-03-05 13:53:29] 2026-03-05 12:52:58,034 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-05 13:53:29] 2026-03-05 12:53:16,273 | INFO     | PID=1781998 has CPU usage=6.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-05 13:53:29] 2026-03-05 12:53:16,274 | INFO     | .. there are 46 such processes running
[2026-03-05 13:53:29] 2026-03-05 12:53:16,274 | INFO     | found 0 job(s) in 20 queues
[2026-03-05 13:53:29] 2026-03-05 12:53:16,274 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-05 13:53:29] 2026-03-05 12:53:16,274 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-05 13:53:29] 2026-03-05 12:53:22,373 | INFO     | [monitor] cgroup control has ended
[2026-03-05 13:53:29] 2026-03-05 12:53:24,402 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22822486046528)>', '<ExcThread(monitor, started 22822174836480)>']
[2026-03-05 13:53:29] 2026-03-05 12:53:25,320 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-05 13:53:29] 2026-03-05 12:53:25,320 | INFO     | [monitor] control thread has ended
[2026-03-05 13:53:29] 2026-03-05 12:53:29,423 | INFO     | all workflow threads have been joined
[2026-03-05 13:53:29] 2026-03-05 12:53:29,424 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-05 13:53:29] 2026-03-05 12:53:29,424 | INFO     | traces error code: 0
[2026-03-05 13:53:29] 2026-03-05 12:53:29,424 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-05 13:53:29] 2026-03-05 12:53:29,561 [wrapper] ==== pilot stdout END ====
[2026-03-05 13:53:29] 2026-03-05 12:53:29,563 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-05 13:53:29] 2026-03-05 12:53:29,565 [wrapper] pilotpid: 1781998
[2026-03-05 13:53:29] 2026-03-05 12:53:29,567 [wrapper] Pilot exit status: 0
[2026-03-05 13:53:29] 2026-03-05 12:53:29,576 [wrapper] pandaids: 7037260612
[2026-03-05 13:53:29] 2026-03-05 12:53:29,716 [wrapper] cleanup supervisor_pilot 2312240 1781999
[2026-03-05 13:53:29] 2026-03-05 12:53:29,719 [wrapper] Test setup, not cleaning
[2026-03-05 13:53:29] 2026-03-05 12:53:29,722 [wrapper] apfmon messages muted
[2026-03-05 13:53:29] 2026-03-05 12:53:29,725 [wrapper] ==== wrapper stdout END ====
[2026-03-05 13:53:29] 2026-03-05 12:53:29,727 [wrapper] ==== wrapper stderr END ====
[2026-03-05 13:53:29]  *** Error codes and diagnostics ***
[2026-03-05 13:53:29]     "exeErrorCode": 0,
[2026-03-05 13:53:29]     "exeErrorDiag": "",
[2026-03-05 13:53:29]     "pilotErrorCode": 0,
[2026-03-05 13:53:29]     "pilotErrorDiag": "",
[2026-03-05 13:53:29]  *** Listing of results directory ***
[2026-03-05 13:53:29] total 431992
[2026-03-05 13:53:29] -rw-r--r--. 1 boinc boinc    584627 Mar  4 07:10 pilot3.tar.gz
[2026-03-05 13:53:29] -rw-r--r--. 1 boinc boinc      5111 Mar  4 07:10 queuedata.json
[2026-03-05 13:53:29] -rwx------. 1 boinc boinc     36322 Mar  4 07:10 runpilot2-wrapper.sh
[2026-03-05 13:53:29] -rw-r--r--. 1 boinc boinc       100 Mar  5 12:33 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-05 13:53:29] -rwxr-xr-x. 1 boinc boinc      7986 Mar  5 12:33 run_atlas
[2026-03-05 13:53:29] -rw-r--r--. 1 boinc boinc       105 Mar  5 12:33 job.xml
[2026-03-05 13:53:29] -rw-r--r--. 1 boinc boinc      6708 Mar  5 12:34 init_data.xml
[2026-03-05 13:53:29] -rw-r--r--. 2 boinc boinc 257954964 Mar  5 12:34 EVNT.48564763._000001.pool.root.1
[2026-03-05 13:53:29] -rw-r--r--. 2 boinc boinc     15845 Mar  5 12:34 start_atlas.sh
[2026-03-05 13:53:29] drwxrwx--x. 2 boinc boinc      4096 Mar  5 12:34 shared
[2026-03-05 13:53:29] -rw-r--r--. 2 boinc boinc    597949 Mar  5 12:34 input.tar.gz
[2026-03-05 13:53:29] -rw-r--r--. 1 boinc boinc         0 Mar  5 12:34 boinc_lockfile
[2026-03-05 13:53:29] -rw-r--r--. 1 boinc boinc      2554 Mar  5 12:34 pandaJob.out
[2026-03-05 13:53:29] -rw-------. 1 boinc boinc    998489 Mar  5 12:34 agis_schedconf.cvmfs.json
[2026-03-05 13:53:29] -rw-------. 1 boinc boinc   1521291 Mar  5 12:34 agis_ddmendpoints.agis.ALL.json
[2026-03-05 13:53:29] -rw-------. 1 boinc boinc       444 Mar  5 12:34 workernode_map.json
[2026-03-05 13:53:29] drwx------. 5 boinc boinc      4096 Mar  5 12:34 pilot3
[2026-03-05 13:53:29] -rw-------. 1 boinc boinc 178549510 Mar  5 13:52 HITS.48937817._000012.pool.root.1
[2026-03-05 13:53:29] -rw-r--r--. 1 boinc boinc       529 Mar  5 13:52 boinc_task_state.xml
[2026-03-05 13:53:29] -rw-------. 1 boinc boinc        95 Mar  5 13:52 pilot_heartbeat.json
[2026-03-05 13:53:29] -rw-------. 1 boinc boinc      1031 Mar  5 13:52 memory_monitor_summary.json
[2026-03-05 13:53:29] -rw-------. 1 boinc boinc    266954 Mar  5 13:52 log.48937817._000012.job.log.tgz.1
[2026-03-05 13:53:29] -rw-------. 1 boinc boinc      6344 Mar  5 13:52 heartbeat.json
[2026-03-05 13:53:29] -rw-r--r--. 1 boinc boinc        27 Mar  5 13:53 wrapper_checkpoint.txt
[2026-03-05 13:53:29] -rw-r--r--. 1 boinc boinc      8192 Mar  5 13:53 boinc_mmap_file
[2026-03-05 13:53:29] -rw-------. 1 boinc boinc      4902 Mar  5 13:53 pilotlog.txt
[2026-03-05 13:53:29] -rw-------. 1 boinc boinc    691069 Mar  5 13:53 log.48937817._000012.job.log.1
[2026-03-05 13:53:29] -rw-------. 1 boinc boinc       357 Mar  5 13:53 output.list
[2026-03-05 13:53:29] -rw-r--r--. 1 boinc boinc       620 Mar  5 13:53 runtime_log
[2026-03-05 13:53:29] -rw-------. 1 boinc boinc    972800 Mar  5 13:53 result.tar.gz
[2026-03-05 13:53:29] -rw-------. 1 boinc boinc       662 Mar  5 13:53 xTkLDmicuH9n9Rq4apOajLDm4fhM0noT9bVooX4SDm6WHLDmOOBaUn.diag
[2026-03-05 13:53:29] -rw-r--r--. 1 boinc boinc      9221 Mar  5 13:53 runtime_log.err
[2026-03-05 13:53:29] -rw-r--r--. 1 boinc boinc     21312 Mar  5 13:53 stderr.txt
[2026-03-05 13:53:29] HITS file was successfully produced:
[2026-03-05 13:53:29] -rw-------. 1 boinc boinc 178549510 Mar  5 13:52 shared/HITS.pool.root.1
[2026-03-05 13:53:29]  *** Contents of shared directory: ***
[2026-03-05 13:53:29] total 427840
[2026-03-05 13:53:29] -rw-r--r--. 2 boinc boinc 257954964 Mar  5 12:34 ATLAS.root_0
[2026-03-05 13:53:29] -rw-r--r--. 2 boinc boinc     15845 Mar  5 12:34 start_atlas.sh
[2026-03-05 13:53:29] -rw-r--r--. 2 boinc boinc    597949 Mar  5 12:34 input.tar.gz
[2026-03-05 13:53:29] -rw-------. 1 boinc boinc 178549510 Mar  5 13:52 HITS.pool.root.1
[2026-03-05 13:53:29] -rw-------. 1 boinc boinc    972800 Mar  5 13:53 result.tar.gz
13:53:31 (1771704): run_atlas exited; CPU time 18133.828171
13:53:31 (1771704): called boinc_finish(0)

</stderr_txt>
]]>

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