Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
04:15:16 (1211721): wrapper (7.7.26015): starting
04:15:16 (1211721): wrapper: running run_atlas (--nthreads 8)
[2026-03-04 04:15:16] Arguments: --nthreads 8
[2026-03-04 04:15:16] Threads: 8
[2026-03-04 04:15:16] Checking for CVMFS
[2026-03-04 04:15:16] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-04 04:15:16] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-04 04:15:16] Running cvmfs_config stat atlas.cern.ch
[2026-03-04 04:15:17] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-04 04:15:17] 2.13.3.0 9582 170955 339188 156875 1 443 24852780 40960001 42515 16776704 0 1963389496 99.738 1365069569 47558 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-03-04 04:15:17] CVMFS is ok
[2026-03-04 04:15:17] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-04 04:15:17] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-04 04:15:17] Further information can be found at the LHC@home message board.
[2026-03-04 04:15:17] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-04 04:15:17] Checking for apptainer binary...
[2026-03-04 04:15:17] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-04 04:15:17] Running /usr/bin/apptainer --version
[2026-03-04 04:15:18] apptainer version 1.4.5-2.el9
[2026-03-04 04:15:18] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-04 04:15:18] c8-7-4.aglt2.org
[2026-03-04 04:15:18] apptainer works
[2026-03-04 04:15:18] Set ATHENA_PROC_NUMBER=8
[2026-03-04 04:15:18] Set ATHENA_CORE_NUMBER=8
[2026-03-04 04:15:18] Starting ATLAS job with PandaID=7033636928
[2026-03-04 04:15:18] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
06:40:12 (1211721): BOINC client no longer exists - exiting
06:40:12 (1211721): timer handler: client dead, exiting
06:40:59 (2410999): wrapper (7.7.26015): starting
06:40:59 (2410999): wrapper: running run_atlas (--nthreads 8)
[2026-03-04 06:40:59] Arguments: --nthreads 8
[2026-03-04 06:40:59] Threads: 8
[2026-03-04 06:40:59] This job has been restarted, cleaning up previous attempt
[2026-03-04 06:40:59] Checking for CVMFS
[2026-03-04 06:40:59] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-04 06:40:59] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-04 06:40:59] Running cvmfs_config stat atlas.cern.ch
[2026-03-04 06:40:59] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-04 06:40:59] 2.13.3.0 9582 171100 338680 156880 0 920 30812468 40960001 36971 16776704 0 1965422220 99.738 1366702448 47559 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-03-04 06:40:59] CVMFS is ok
[2026-03-04 06:40:59] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-04 06:40:59] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-04 06:40:59] Further information can be found at the LHC@home message board.
[2026-03-04 06:40:59] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-04 06:40:59] Checking for apptainer binary...
[2026-03-04 06:40:59] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-04 06:40:59] Running /usr/bin/apptainer --version
[2026-03-04 06:40:59] apptainer version 1.4.5-2.el9
[2026-03-04 06:40:59] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-04 06:41:00] c8-7-4.aglt2.org
[2026-03-04 06:41:00] apptainer works
[2026-03-04 06:41:00] Set ATHENA_PROC_NUMBER=8
[2026-03-04 06:41:00] Set ATHENA_CORE_NUMBER=8
[2026-03-04 06:41:00] Starting ATLAS job with PandaID=7033636928
[2026-03-04 06:41:00] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-04 10:48:53]  *** The last 200 lines of the pilot log: ***
[2026-03-04 10:48:53] 2026-03-04 15:47:49,353 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-04 10:48:53] 2026-03-04 15:47:49,353 | INFO     | log transfer has been attempted: DONE
[2026-03-04 10:48:53] 2026-03-04 15:47:49,353 | INFO     | job 7033636928 has finished - writing final server update
[2026-03-04 10:48:53] 2026-03-04 15:47:49,353 | INFO     | total number of processed events: 400 (read)
[2026-03-04 10:48:53] 2026-03-04 15:47:49,384 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-7033636928/memory_monitor_summary.json (trf name=prmon)
[2026-03-04 10:48:53] 2026-03-04 15:47:49,384 | INFO     | extracted standard info from prmon json
[2026-03-04 10:48:53] 2026-03-04 15:47:49,384 | INFO     | extracted standard memory fields from prmon json
[2026-03-04 10:48:53] 2026-03-04 15:47:49,384 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-04 10:48:53] 2026-03-04 15:47:49,388 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-04 10:48:53] 2026-03-04 15:47:49,389 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-04 10:48:53] 2026-03-04 15:47:49,391 | INFO     | fitting pss+swap vs Time
[2026-03-04 10:48:53] 2026-03-04 15:47:49,391 | INFO     | sum of square deviations: 4394600290.000005
[2026-03-04 10:48:53] 2026-03-04 15:47:49,392 | INFO     | sum of deviations: 42405280375.72725
[2026-03-04 10:48:53] 2026-03-04 15:47:49,392 | INFO     | mean x: 1772631861.5454545
[2026-03-04 10:48:53] 2026-03-04 15:47:49,392 | INFO     | mean y: 2433509.4338842975
[2026-03-04 10:48:53] 2026-03-04 15:47:49,392 | INFO     | intersect: -17102410192.240347
[2026-03-04 10:48:53] 2026-03-04 15:47:49,393 | INFO     | chi2: 2.126202672763381
[2026-03-04 10:48:53] 2026-03-04 15:47:49,393 | INFO     | sum of square deviations: 4127798642.4894505
[2026-03-04 10:48:53] 2026-03-04 15:47:49,394 | INFO     | sum of deviations: 57502753893.20679
[2026-03-04 10:48:53] 2026-03-04 15:47:49,394 | INFO     | mean x: 1772631709.0464134
[2026-03-04 10:48:53] 2026-03-04 15:47:49,394 | INFO     | mean y: 2441980.890295359
[2026-03-04 10:48:53] 2026-03-04 15:47:49,394 | INFO     | intersect: -24691399394.84027
[2026-03-04 10:48:53] 2026-03-04 15:47:49,394 | INFO     | chi2: 1.2858151529689674
[2026-03-04 10:48:53] 2026-03-04 15:47:49,394 | INFO     | current chi2=1.2858151529689674 (change=39.52527811952093 %)
[2026-03-04 10:48:53] 2026-03-04 15:47:49,394 | INFO     | sum of square deviations: 3872020457.478458
[2026-03-04 10:48:53] 2026-03-04 15:47:49,395 | INFO     | sum of deviations: 55910659543.49568
[2026-03-04 10:48:53] 2026-03-04 15:47:49,395 | INFO     | mean x: 1772631556.5474138
[2026-03-04 10:48:53] 2026-03-04 15:47:49,395 | INFO     | mean y: 2441031.9094827585
[2026-03-04 10:48:53] 2026-03-04 15:47:49,395 | INFO     | intersect: -25593756235.78811
[2026-03-04 10:48:53] 2026-03-04 15:47:49,396 | INFO     | chi2: 1.2853792327605909
[2026-03-04 10:48:53] 2026-03-04 15:47:49,396 | INFO     | current chi2=1.2853792327605909 (change=0.03390224538651809 %)
[2026-03-04 10:48:53] 2026-03-04 15:47:49,396 | INFO     | right removable region: 231
[2026-03-04 10:48:53] 2026-03-04 15:47:49,396 | INFO     | sum of square deviations: 4127791932.4894505
[2026-03-04 10:48:53] 2026-03-04 15:47:49,407 | INFO     | sum of deviations: 9461092801.088606
[2026-03-04 10:48:53] 2026-03-04 15:47:49,407 | INFO     | mean x: 1772632014.0464134
[2026-03-04 10:48:53] 2026-03-04 15:47:49,407 | INFO     | mean y: 2452165.810126582
[2026-03-04 10:48:53] 2026-03-04 15:47:49,407 | INFO     | intersect: -4060503589.0743475
[2026-03-04 10:48:53] 2026-03-04 15:47:49,407 | INFO     | chi2: 0.9094993716819665
[2026-03-04 10:48:53] 2026-03-04 15:47:49,407 | INFO     | current chi2=0.9094993716819665 (change=57.224239093825005 %)
[2026-03-04 10:48:53] 2026-03-04 15:47:49,408 | INFO     | sum of square deviations: 3872007037.478458
[2026-03-04 10:48:53] 2026-03-04 15:47:49,408 | INFO     | sum of deviations: -368935437.86206627
[2026-03-04 10:48:53] 2026-03-04 15:47:49,408 | INFO     | mean x: 1772632166.5474138
[2026-03-04 10:48:53] 2026-03-04 15:47:49,409 | INFO     | mean y: 2458026.896551724
[2026-03-04 10:48:53] 2026-03-04 15:47:49,409 | INFO     | intersect: 171359275.83628634
[2026-03-04 10:48:53] 2026-03-04 15:47:49,409 | INFO     | chi2: 0.8572805263316199
[2026-03-04 10:48:53] 2026-03-04 15:47:49,409 | INFO     | current chi2=0.8572805263316199 (change=5.741493284792116 %)
[2026-03-04 10:48:53] 2026-03-04 15:47:49,409 | INFO     | left removable region: 20
[2026-03-04 10:48:53] 2026-03-04 15:47:49,409 | INFO     | sum of square deviations: 2912852980.4265337
[2026-03-04 10:48:53] 2026-03-04 15:47:49,410 | INFO     | sum of deviations: 12216164583.189573
[2026-03-04 10:48:53] 2026-03-04 15:47:49,410 | INFO     | mean x: 1772632136.0521326
[2026-03-04 10:48:53] 2026-03-04 15:47:49,410 | INFO     | mean y: 2468329.8009478673
[2026-03-04 10:48:53] 2026-03-04 15:47:49,410 | INFO     | intersect: -7431743442.978879
[2026-03-04 10:48:53] 2026-03-04 15:47:49,410 | INFO     | chi2: 0.002225659452670706
[2026-03-04 10:48:53] 2026-03-04 15:47:49,410 | INFO     | current memory leak: 4.19 B/s (using 211 data points, chi2=0.00)
[2026-03-04 10:48:53] 2026-03-04 15:47:49,411 | INFO     | could have reported an average CPU frequency of 3799 MHz (12 samples)
[2026-03-04 10:48:53] 2026-03-04 15:47:49,411 | INFO     | ..............................
[2026-03-04 10:48:53] 2026-03-04 15:47:49,411 | INFO     | . Timing measurements:
[2026-03-04 10:48:53] 2026-03-04 15:47:49,411 | INFO     | . get job = 0 s
[2026-03-04 10:48:53] 2026-03-04 15:47:49,411 | INFO     | . initial setup = 1 s
[2026-03-04 10:48:53] 2026-03-04 15:47:49,411 | INFO     | . payload setup = 9 s
[2026-03-04 10:48:53] 2026-03-04 15:47:49,411 | INFO     | . stage-in = 0 s
[2026-03-04 10:48:53] 2026-03-04 15:47:49,411 | INFO     | . payload execution = 14759 s
[2026-03-04 10:48:53] 2026-03-04 15:47:49,411 | INFO     | . stage-out = 2 s
[2026-03-04 10:48:53] 2026-03-04 15:47:49,411 | INFO     | . log creation = 0 s
[2026-03-04 10:48:53] 2026-03-04 15:47:49,411 | INFO     | ..............................
[2026-03-04 10:48:53] 2026-03-04 15:47:49,570 | INFO     | 
[2026-03-04 10:48:53] 2026-03-04 15:47:49,571 | INFO     | job summary report
[2026-03-04 10:48:53] 2026-03-04 15:47:49,571 | INFO     | --------------------------------------------------
[2026-03-04 10:48:53] 2026-03-04 15:47:49,571 | INFO     | PanDA job id: 7033636928
[2026-03-04 10:48:53] 2026-03-04 15:47:49,571 | INFO     | task id: 48844128
[2026-03-04 10:48:53] 2026-03-04 15:47:49,571 | INFO     | errors: (none)
[2026-03-04 10:48:53] 2026-03-04 15:47:49,571 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-04 10:48:53] 2026-03-04 15:47:49,571 | INFO     | pilot state: finished 
[2026-03-04 10:48:53] 2026-03-04 15:47:49,571 | INFO     | transexitcode: 0
[2026-03-04 10:48:53] 2026-03-04 15:47:49,571 | INFO     | exeerrorcode: 0
[2026-03-04 10:48:53] 2026-03-04 15:47:49,571 | INFO     | exeerrordiag: 
[2026-03-04 10:48:53] 2026-03-04 15:47:49,571 | INFO     | exitcode: 0
[2026-03-04 10:48:53] 2026-03-04 15:47:49,571 | INFO     | exitmsg: OK
[2026-03-04 10:48:53] 2026-03-04 15:47:49,571 | INFO     | cpuconsumptiontime: 45538 s
[2026-03-04 10:48:53] 2026-03-04 15:47:49,571 | INFO     | nevents: 400
[2026-03-04 10:48:53] 2026-03-04 15:47:49,571 | INFO     | neventsw: 0
[2026-03-04 10:48:53] 2026-03-04 15:47:49,571 | INFO     | pid: 2459657
[2026-03-04 10:48:53] 2026-03-04 15:47:49,571 | INFO     | pgrp: 2459657
[2026-03-04 10:48:53] 2026-03-04 15:47:49,571 | INFO     | corecount: 8
[2026-03-04 10:48:53] 2026-03-04 15:47:49,571 | INFO     | event service: False
[2026-03-04 10:48:53] 2026-03-04 15:47:49,571 | INFO     | sizes: {0: 2286862, 1: 2287152, 11: 2287152, 14773: 2318228, 14776: 2327226, 14779: 2327282, 14780: 2327604}
[2026-03-04 10:48:53] 2026-03-04 15:47:49,571 | INFO     | --------------------------------------------------
[2026-03-04 10:48:53] 2026-03-04 15:47:49,571 | INFO     | 
[2026-03-04 10:48:53] 2026-03-04 15:47:49,572 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2026-03-04 10:48:53] 2026-03-04 15:47:49,929 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-04 10:48:53] 2026-03-04 15:47:49,929 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-04 10:48:53] 2026-03-04 15:47:49,929 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-04 10:48:53] 2026-03-04 15:47:49,929 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-04 10:48:53] 2026-03-04 15:47:49,929 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-04 10:48:53] 2026-03-04 15:47:49,929 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-04 10:48:53] 2026-03-04 15:47:49,929 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-04 10:48:53] 2026-03-04 15:47:49,929 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-04 10:48:53] 2026-03-04 15:47:49,929 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-04 10:48:53] 2026-03-04 15:47:49,929 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-04 10:48:53] 2026-03-04 15:47:49,930 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-04 10:48:53] 2026-03-04 15:47:49,930 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-04 10:48:53] 2026-03-04 15:47:49,930 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-04 10:48:53] 2026-03-04 15:47:49,930 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-04 10:48:53] 2026-03-04 15:47:49,930 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-04 10:48:53] 2026-03-04 15:47:49,930 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-04 10:48:53] 2026-03-04 15:47:49,930 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-04 10:48:53] 2026-03-04 15:47:49,930 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-04 10:48:53] 2026-03-04 15:47:49,939 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-04 10:48:53] 2026-03-04 15:47:49,939 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-04 10:48:53] 2026-03-04 15:47:49,940 | INFO     | job 7033636928 has completed (purged errors)
[2026-03-04 10:48:53] 2026-03-04 15:47:49,940 | INFO     | overall cleanup function is called
[2026-03-04 10:48:53] 2026-03-04 15:47:50,947 | INFO     | --- collectZombieJob: --- 10, [2459657]
[2026-03-04 10:48:53] 2026-03-04 15:47:50,948 | INFO     | zombie collector waiting for pid 2459657
[2026-03-04 10:48:53] 2026-03-04 15:47:50,948 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-04 10:48:53] 2026-03-04 15:47:50,948 | INFO     | collected zombie processes
[2026-03-04 10:48:53] 2026-03-04 15:47:50,948 | INFO     | will attempt to kill all subprocesses of pid=2459657
[2026-03-04 10:48:53] 2026-03-04 15:47:52,971 | INFO     | process IDs to be killed: [2459657] (in reverse order)
[2026-03-04 10:48:53] 2026-03-04 15:47:53,274 | WARNING  | found no corresponding commands to process id(s)
[2026-03-04 10:48:53] 2026-03-04 15:47:53,274 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-04 10:48:53] 2026-03-04 15:47:53,364 | INFO     | did not find any defunct processes belonging to 2459657
[2026-03-04 10:48:53] 2026-03-04 15:47:53,435 | INFO     | did not find any defunct processes belonging to 2459657
[2026-03-04 10:48:53] 2026-03-04 15:47:53,435 | INFO     | ready for new job
[2026-03-04 10:48:53] 2026-03-04 15:47:53,436 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-04 10:48:53] 2026-03-04 15:47:53,442 | INFO     | **************************************
[2026-03-04 10:48:53] 2026-03-04 15:47:53,455 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-04 10:48:53] 2026-03-04 15:47:53,455 | INFO     | **************************************
[2026-03-04 10:48:53] 2026-03-04 15:47:53,456 | INFO     | 
[2026-03-04 10:48:53] 2026-03-04 15:47:53,468 | INFO     | architecture information:
[2026-03-04 10:48:53] 2026-03-04 15:47:53,472 | INFO     | executing command: cat /etc/os-release
[2026-03-04 10:48:53] 2026-03-04 15:47:53,574 | INFO     | cat /etc/os-release:
[2026-03-04 10:48:53] NAME="CentOS Linux"
[2026-03-04 10:48:53] VERSION="7 (Core)"
[2026-03-04 10:48:53] ID="centos"
[2026-03-04 10:48:53] ID_LIKE="rhel fedora"
[2026-03-04 10:48:53] VERSION_ID="7"
[2026-03-04 10:48:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-04 10:48:53] ANSI_COLOR="0;31"
[2026-03-04 10:48:53] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-04 10:48:53] HOME_URL="https://www.centos.org/"
[2026-03-04 10:48:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-04 10:48:53] 
[2026-03-04 10:48:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-04 10:48:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-04 10:48:53] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-04 10:48:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-04 10:48:53] 
[2026-03-04 10:48:53] 2026-03-04 15:47:53,574 | INFO     | **************************************
[2026-03-04 10:48:53] 2026-03-04 15:47:54,078 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2026-03-04 10:48:53] 2026-03-04 15:47:54,138 | INFO     | sufficient remaining disk space (170182836224 B)
[2026-03-04 10:48:53] 2026-03-04 15:47:54,138 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-04 10:48:53] 2026-03-04 15:47:54,138 | INFO     | current server update state: UPDATING_FINAL
[2026-03-04 10:48:53] 2026-03-04 15:47:54,138 | INFO     | update_server=False
[2026-03-04 10:48:53] 2026-03-04 15:47:54,138 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-04 10:48:53] 2026-03-04 15:47:54,138 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-04 10:48:53] 2026-03-04 15:47:54,138 | INFO     | aborting loop
[2026-03-04 10:48:53] 2026-03-04 15:47:54,138 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-04 10:48:53] 2026-03-04 15:47:54,294 | INFO     | all payload control threads have been joined
[2026-03-04 10:48:53] 2026-03-04 15:47:54,609 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-04 10:48:53] 2026-03-04 15:47:55,143 | INFO     | [job] retrieve thread has finished
[2026-03-04 10:48:53] 2026-03-04 15:47:55,144 | INFO     | [job] job monitor thread has finished
[2026-03-04 10:48:53] 2026-03-04 15:47:55,209 | INFO     | all data control threads have been joined
[2026-03-04 10:48:53] 2026-03-04 15:47:55,262 | INFO     | [job] create_data_payload thread has finished
[2026-03-04 10:48:53] 2026-03-04 15:47:55,279 | INFO     | all job control threads have been joined
[2026-03-04 10:48:53] 2026-03-04 15:47:55,300 | INFO     | [payload] control thread has finished
[2026-03-04 10:48:53] 2026-03-04 15:47:55,378 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-04 10:48:53] 2026-03-04 15:47:55,604 | INFO     | [payload] execute_payloads thread has finished
[2026-03-04 10:48:53] 2026-03-04 15:47:55,616 | INFO     | [job] queue monitor thread has finished
[2026-03-04 10:48:53] 2026-03-04 15:47:56,065 | INFO     | [data] copytool_in thread has finished
[2026-03-04 10:48:53] 2026-03-04 15:47:56,066 | INFO     | [job] validate thread has finished
[2026-03-04 10:48:53] 2026-03-04 15:47:56,138 | INFO     | [payload] failed_post thread has finished
[2026-03-04 10:48:53] 2026-03-04 15:47:56,145 | INFO     | [data] copytool_out thread has finished
[2026-03-04 10:48:53] 2026-03-04 15:47:56,215 | INFO     | [data] control thread has finished
[2026-03-04 10:48:53] 2026-03-04 15:47:56,286 | INFO     | [job] control thread has finished
[2026-03-04 10:48:53] 2026-03-04 15:47:56,330 | INFO     | [payload] validate_pre thread has finished
[2026-03-04 10:48:53] 2026-03-04 15:47:56,330 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-04 10:48:53] 2026-03-04 15:47:56,496 | INFO     | [payload] validate_post thread has finished
[2026-03-04 10:48:53] 2026-03-04 15:47:59,388 | INFO     | [data] queue_monitor thread has finished
[2026-03-04 10:48:53] 2026-03-04 15:48:24,146 | INFO     | PID=2441618 has CPU usage=5.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-04 10:48:53] 2026-03-04 15:48:24,146 | INFO     | .. there are 56 such processes running
[2026-03-04 10:48:53] 2026-03-04 15:48:24,146 | INFO     | found 0 job(s) in 20 queues
[2026-03-04 10:48:53] 2026-03-04 15:48:24,147 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-04 10:48:53] 2026-03-04 15:48:24,147 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-04 10:48:53] 2026-03-04 15:48:44,188 | INFO     | [monitor] cgroup control has ended
[2026-03-04 10:48:53] 2026-03-04 15:48:46,225 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140223328794432)>', '<ExcThread(monitor, started 140222981445376)>']
[2026-03-04 10:48:53] 2026-03-04 15:48:46,311 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-04 10:48:53] 2026-03-04 15:48:46,312 | INFO     | [monitor] control thread has ended
[2026-03-04 10:48:53] 2026-03-04 15:48:51,257 | INFO     | all workflow threads have been joined
[2026-03-04 10:48:53] 2026-03-04 15:48:51,258 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-04 10:48:53] 2026-03-04 15:48:51,258 | INFO     | traces error code: 0
[2026-03-04 10:48:53] 2026-03-04 15:48:51,258 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-04 10:48:53] 2026-03-04 15:48:51,879 [wrapper] ==== pilot stdout END ====
[2026-03-04 10:48:53] 2026-03-04 15:48:51,964 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-04 10:48:53] 2026-03-04 15:48:51,979 [wrapper] pilotpid: 2441618
[2026-03-04 10:48:53] 2026-03-04 15:48:51,997 [wrapper] Pilot exit status: 0
[2026-03-04 10:48:53] 2026-03-04 15:48:52,141 [wrapper] pandaids: 7033636928 7033636928
[2026-03-04 10:48:53] 2026-03-04 15:48:52,333 [wrapper] cleanup supervisor_pilot 3839902 2441619
[2026-03-04 10:48:53] 2026-03-04 15:48:52,351 [wrapper] Test setup, not cleaning
[2026-03-04 10:48:53] 2026-03-04 15:48:52,383 [wrapper] apfmon messages muted
[2026-03-04 10:48:53] 2026-03-04 15:48:52,407 [wrapper] ==== wrapper stdout END ====
[2026-03-04 10:48:53] 2026-03-04 15:48:52,473 [wrapper] ==== wrapper stderr END ====
[2026-03-04 10:48:53]  *** Error codes and diagnostics ***
[2026-03-04 10:48:53]     "exeErrorCode": 0,
[2026-03-04 10:48:53]     "exeErrorDiag": "",
[2026-03-04 10:48:53]     "pilotErrorCode": 0,
[2026-03-04 10:48:53]     "pilotErrorDiag": "",
[2026-03-04 10:48:53]  *** Listing of results directory ***
[2026-03-04 10:48:53] total 615296
[2026-03-04 10:48:53] drwx------. 5 boincer umatlas      4096 Feb  2 10:00 pilot3
[2026-03-04 10:48:53] -rw-r--r--. 1 boincer umatlas    584627 Feb 28 13:22 pilot3.tar.gz
[2026-03-04 10:48:53] -rwx------. 1 boincer umatlas     36322 Feb 28 13:25 runpilot2-wrapper.sh
[2026-03-04 10:48:53] -rw-r--r--. 1 boincer umatlas      5111 Feb 28 13:28 queuedata.json
[2026-03-04 10:48:53] -rw-r--r--. 1 boincer umatlas       100 Mar  4 04:15 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-04 10:48:53] -rwxr-xr-x. 1 boincer umatlas      7986 Mar  4 04:15 run_atlas
[2026-03-04 10:48:53] -rw-r--r--. 1 boincer umatlas       105 Mar  4 04:15 job.xml
[2026-03-04 10:48:53] -rw-r--r--. 3 boincer umatlas 231577109 Mar  4 04:15 EVNT.48448369._000002.pool.root.1
[2026-03-04 10:48:53] -rw-r--r--. 3 boincer umatlas 231577109 Mar  4 04:15 ATLAS.root_0
[2026-03-04 10:48:53] -rw-r--r--. 2 boincer umatlas     15845 Mar  4 04:15 start_atlas.sh
[2026-03-04 10:48:53] drwxrwx--x. 2 boincer umatlas      4096 Mar  4 04:15 shared
[2026-03-04 10:48:53] -rw-r--r--. 2 boincer umatlas    597966 Mar  4 04:15 input.tar.gz
[2026-03-04 10:48:53] -rw-r--r--. 1 boincer umatlas         0 Mar  4 04:15 boinc_lockfile
[2026-03-04 10:48:53] -rw-r--r--. 1 boincer umatlas      2603 Mar  4 06:41 pandaJob.out
[2026-03-04 10:48:53] -rw-------. 1 boincer umatlas        57 Mar  4 06:41 setup.sh.local
[2026-03-04 10:48:53] -rw-------. 1 boincer umatlas    997352 Mar  4 06:41 agis_schedconf.cvmfs.json
[2026-03-04 10:48:53] -rw-------. 1 boincer umatlas       427 Mar  4 06:41 workernode_map.json
[2026-03-04 10:48:53] -rw-------. 1 boincer umatlas 158279595 Mar  4 10:46 HITS.48844128._000047.pool.root.1
[2026-03-04 10:48:53] -rw-r--r--. 1 boincer umatlas       530 Mar  4 10:46 boinc_task_state.xml
[2026-03-04 10:48:53] -rw-------. 1 boincer umatlas      1053 Mar  4 10:47 memory_monitor_summary.json
[2026-03-04 10:48:53] -rw-------. 1 boincer umatlas   1516092 Mar  4 10:47 agis_ddmendpoints.agis.ALL.json
[2026-03-04 10:48:53] -rw-------. 1 boincer umatlas    472175 Mar  4 10:47 log.48844128._000047.job.log.tgz.1
[2026-03-04 10:48:53] -rw-------. 1 boincer umatlas      6350 Mar  4 10:47 heartbeat.json
[2026-03-04 10:48:53] -rw-r--r--. 1 boincer umatlas      7173 Mar  4 10:48 init_data.xml
[2026-03-04 10:48:53] -rw-------. 1 boincer umatlas        95 Mar  4 10:48 pilot_heartbeat.json
[2026-03-04 10:48:53] -rw-r--r--. 1 boincer umatlas      8192 Mar  4 10:48 boinc_mmap_file
[2026-03-04 10:48:53] -rw-r--r--. 1 boincer umatlas        28 Mar  4 10:48 wrapper_checkpoint.txt
[2026-03-04 10:48:53] -rw-------. 1 boincer umatlas      4821 Mar  4 10:48 pilotlog.txt
[2026-03-04 10:48:53] -rw-------. 1 boincer umatlas   1870659 Mar  4 10:48 log.48844128._000047.job.log.1
[2026-03-04 10:48:53] -rw-------. 1 boincer umatlas       357 Mar  4 10:48 output.list
[2026-03-04 10:48:53] -rw-r--r--. 1 boincer umatlas       620 Mar  4 10:48 runtime_log
[2026-03-04 10:48:53] -rw-------. 1 boincer umatlas   2365440 Mar  4 10:48 result.tar.gz
[2026-03-04 10:48:53] -rw-r--r--. 1 boincer umatlas      9417 Mar  4 10:48 runtime_log.err
[2026-03-04 10:48:53] -rw-------. 1 boincer umatlas       782 Mar  4 10:48 8TwMDmfBeG9n9Rq4apOajLDm4fhM0noT9bVooX4SDm7A6KDmv8fmHm.diag
[2026-03-04 10:48:53] -rw-r--r--. 1 boincer umatlas     23438 Mar  4 10:48 stderr.txt
[2026-03-04 10:48:53] HITS file was successfully produced:
[2026-03-04 10:48:53] -rw-------. 1 boincer umatlas 158279595 Mar  4 10:46 shared/HITS.pool.root.1
[2026-03-04 10:48:53]  *** Contents of shared directory: ***
[2026-03-04 10:48:53] total 383640
[2026-03-04 10:48:53] -rw-r--r--. 3 boincer umatlas 231577109 Mar  4 04:15 ATLAS.root_0
[2026-03-04 10:48:53] -rw-r--r--. 2 boincer umatlas     15845 Mar  4 04:15 start_atlas.sh
[2026-03-04 10:48:53] -rw-r--r--. 2 boincer umatlas    597966 Mar  4 04:15 input.tar.gz
[2026-03-04 10:48:53] -rw-------. 1 boincer umatlas 158279595 Mar  4 10:46 HITS.pool.root.1
[2026-03-04 10:48:53] -rw-------. 1 boincer umatlas   2365440 Mar  4 10:48 result.tar.gz
10:48:55 (2410999): run_atlas exited; CPU time 46163.409772
10:48:55 (2410999): called boinc_finish(0)

</stderr_txt>
]]>

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