Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
14:24:19 (3766273): wrapper (7.7.26015): starting
14:24:19 (3766273): wrapper: running run_atlas (--nthreads 4)
[2026-03-04 14:24:19] Arguments: --nthreads 4
[2026-03-04 14:24:19] Threads: 4
[2026-03-04 14:24:19] Checking for CVMFS
[2026-03-04 14:24:20] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-04 14:24:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-04 14:24:20] Running cvmfs_config stat atlas.cern.ch
[2026-03-04 14:24:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-04 14:24:20] 2.13.1.0 1271402 9949 93360 156880 3 188 8583224 10240000 1822 130560 0 15957418 99.995 374326 516 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.101.101:3128 1
[2026-03-04 14:24:20] CVMFS is ok
[2026-03-04 14:24:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-04 14:24:20] Checking for apptainer binary...
[2026-03-04 14:24:20] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-04 14:24:20] Running /usr/bin/apptainer --version
[2026-03-04 14:24:20] apptainer version 1.4.5
[2026-03-04 14:24:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-04 14:24:20] julianvlneu
[2026-03-04 14:24:20] apptainer works
[2026-03-04 14:24:20] Set ATHENA_PROC_NUMBER=4
[2026-03-04 14:24:20] Set ATHENA_CORE_NUMBER=4
[2026-03-04 14:24:20] Starting ATLAS job with PandaID=7035356109
[2026-03-04 14:24:20] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc_data/boinc-01/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-04 15:31:11]  *** The last 200 lines of the pilot log: ***
[2026-03-04 15:31:11]  lfn=log.48838447._002626.job.log.tgz.1
[2026-03-04 15:31:11]  mtime=0
[2026-03-04 15:31:11]  protocol_id=None
[2026-03-04 15:31:11]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-03-04 15:31:11]  replicas=None
[2026-03-04 15:31:11]  scope=mc23_13p6TeV
[2026-03-04 15:31:11]  status=None
[2026-03-04 15:31:11]  status_code=0
[2026-03-04 15:31:11]  storage_token=
[2026-03-04 15:31:11]  surl=/var/lib/boinc_data/boinc-01/slots/1/PanDA_Pilot-7035356109/log.48838447._002626.job.log.tgz.1
[2026-03-04 15:31:11]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/fa/84/log.48838447._002626.job.log.tgz.1
[2026-03-04 15:31:11]  workdir=None
[2026-03-04 15:31:11] ]
[2026-03-04 15:31:11] 2026-03-04 14:30:36,698 | INFO     | transferring file log.48838447._002626.job.log.tgz.1 from /var/lib/boinc_data/boinc-01/slots/1/PanDA_Pilot-7035356109/log.48838447._002626.job.log.tgz.1 to /var/li
[2026-03-04 15:31:11] 2026-03-04 14:30:36,698 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc_data/boinc-01/slots/1/PanDA_Pilot-7035356109/log.48838447._002626.job.log.tgz.1 /var/lib/boinc_data/boinc-01/slot
[2026-03-04 15:31:11] 2026-03-04 14:30:36,713 | INFO     | PID=3770301 has CPU usage=5.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-04 15:31:11] 2026-03-04 14:30:36,713 | INFO     | .. there are 3 such processes running
[2026-03-04 15:31:11] 2026-03-04 14:30:36,724 | INFO     | adding to output.list: log.48838447._002626.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/fa/84/log.48838447._002626.job.log.tg
[2026-03-04 15:31:11] 2026-03-04 14:30:36,725 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-04 15:31:11] 2026-03-04 14:30:36,725 | INFO     | summary of transferred files:
[2026-03-04 15:31:11] 2026-03-04 14:30:36,725 | INFO     |  -- lfn=log.48838447._002626.job.log.tgz.1, status_code=0, status=transferred
[2026-03-04 15:31:11] 2026-03-04 14:30:36,725 | INFO     | stage-out finished correctly
[2026-03-04 15:31:11] 2026-03-04 14:30:37,714 | INFO     | time since job start (3956s) is within the limit (349056.0s)
[2026-03-04 15:31:11] 2026-03-04 14:30:38,501 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-04 15:31:11] 2026-03-04 14:30:38,530 | INFO     | job 7035356109 has state=finished
[2026-03-04 15:31:11] 2026-03-04 14:30:38,531 | INFO     | preparing for final server update for job 7035356109 in state='finished'
[2026-03-04 15:31:11] 2026-03-04 14:30:38,531 | INFO     | reading metadata from: /var/lib/boinc_data/boinc-01/slots/1/PanDA_Pilot-7035356109/jobReport.json
[2026-03-04 15:31:11] 2026-03-04 14:30:38,532 | INFO     | added worker_node to metadata from /var/lib/boinc_data/boinc-01/slots/1/workernode_map.json
[2026-03-04 15:31:11] 2026-03-04 14:30:38,532 | INFO     | this job has now completed (state=finished)
[2026-03-04 15:31:11] 2026-03-04 14:30:38,532 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-04 15:31:11] 2026-03-04 14:30:38,532 | INFO     | log transfer has been attempted: DONE
[2026-03-04 15:31:11] 2026-03-04 14:30:38,532 | INFO     | job 7035356109 has finished - writing final server update
[2026-03-04 15:31:11] 2026-03-04 14:30:38,533 | INFO     | total number of processed events: 400 (read)
[2026-03-04 15:31:11] 2026-03-04 14:30:38,534 | INFO     | using path: /var/lib/boinc_data/boinc-01/slots/1/PanDA_Pilot-7035356109/memory_monitor_summary.json (trf name=prmon)
[2026-03-04 15:31:11] 2026-03-04 14:30:38,534 | INFO     | extracted standard info from prmon json
[2026-03-04 15:31:11] 2026-03-04 14:30:38,534 | INFO     | extracted standard memory fields from prmon json
[2026-03-04 15:31:11] 2026-03-04 14:30:38,534 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-04 15:31:11] 2026-03-04 14:30:38,534 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-04 15:31:11] 2026-03-04 14:30:38,534 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-04 15:31:11] 2026-03-04 14:30:38,535 | INFO     | fitting pss+swap vs Time
[2026-03-04 15:31:11] 2026-03-04 14:30:38,535 | INFO     | sum of square deviations: 60482994.5
[2026-03-04 15:31:11] 2026-03-04 14:30:38,535 | INFO     | sum of deviations: 541156254.0
[2026-03-04 15:31:11] 2026-03-04 14:30:38,535 | INFO     | mean x: 1772632749.5
[2026-03-04 15:31:11] 2026-03-04 14:30:38,535 | INFO     | mean y: 2495575.0344827585
[2026-03-04 15:31:11] 2026-03-04 14:30:38,535 | INFO     | intersect: -15857686387.965717
[2026-03-04 15:31:11] 2026-03-04 14:30:38,535 | INFO     | chi2: 0.004827118863133829
[2026-03-04 15:31:11] 2026-03-04 14:30:38,535 | INFO     | current memory leak: 8.95 B/s (using 58 data points, chi2=0.00)
[2026-03-04 15:31:11] 2026-03-04 14:30:38,535 | INFO     | could have reported an average CPU frequency of 4399 MHz (6 samples)
[2026-03-04 15:31:11] 2026-03-04 14:30:38,535 | INFO     | ..............................
[2026-03-04 15:31:11] 2026-03-04 14:30:38,536 | INFO     | . Timing measurements:
[2026-03-04 15:31:11] 2026-03-04 14:30:38,536 | INFO     | . get job = 0 s
[2026-03-04 15:31:11] 2026-03-04 14:30:38,536 | INFO     | . initial setup = 7 s
[2026-03-04 15:31:11] 2026-03-04 14:30:38,536 | INFO     | . payload setup = 8 s
[2026-03-04 15:31:11] 2026-03-04 14:30:38,536 | INFO     | . stage-in = 0 s
[2026-03-04 15:31:11] 2026-03-04 14:30:38,536 | INFO     | . payload execution = 3932 s
[2026-03-04 15:31:11] 2026-03-04 14:30:38,536 | INFO     | . stage-out = 0 s
[2026-03-04 15:31:11] 2026-03-04 14:30:38,536 | INFO     | . log creation = 0 s
[2026-03-04 15:31:11] 2026-03-04 14:30:38,536 | INFO     | ..............................
[2026-03-04 15:31:11] 2026-03-04 14:30:38,558 | INFO     | 
[2026-03-04 15:31:11] 2026-03-04 14:30:38,558 | INFO     | job summary report
[2026-03-04 15:31:11] 2026-03-04 14:30:38,558 | INFO     | --------------------------------------------------
[2026-03-04 15:31:11] 2026-03-04 14:30:38,559 | INFO     | PanDA job id: 7035356109
[2026-03-04 15:31:11] 2026-03-04 14:30:38,559 | INFO     | task id: 48838447
[2026-03-04 15:31:11] 2026-03-04 14:30:38,559 | INFO     | errors: (none)
[2026-03-04 15:31:11] 2026-03-04 14:30:38,559 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-04 15:31:11] 2026-03-04 14:30:38,559 | INFO     | pilot state: finished 
[2026-03-04 15:31:11] 2026-03-04 14:30:38,559 | INFO     | transexitcode: 0
[2026-03-04 15:31:11] 2026-03-04 14:30:38,559 | INFO     | exeerrorcode: 0
[2026-03-04 15:31:11] 2026-03-04 14:30:38,559 | INFO     | exeerrordiag: 
[2026-03-04 15:31:11] 2026-03-04 14:30:38,559 | INFO     | exitcode: 0
[2026-03-04 15:31:11] 2026-03-04 14:30:38,559 | INFO     | exitmsg: OK
[2026-03-04 15:31:11] 2026-03-04 14:30:38,559 | INFO     | cpuconsumptiontime: 14656 s
[2026-03-04 15:31:11] 2026-03-04 14:30:38,559 | INFO     | nevents: 400
[2026-03-04 15:31:11] 2026-03-04 14:30:38,559 | INFO     | neventsw: 0
[2026-03-04 15:31:11] 2026-03-04 14:30:38,559 | INFO     | pid: 3774858
[2026-03-04 15:31:11] 2026-03-04 14:30:38,559 | INFO     | pgrp: 3774858
[2026-03-04 15:31:11] 2026-03-04 14:30:38,559 | INFO     | corecount: 4
[2026-03-04 15:31:11] 2026-03-04 14:30:38,559 | INFO     | event service: False
[2026-03-04 15:31:11] 2026-03-04 14:30:38,559 | INFO     | sizes: {0: 2287095, 10: 2287095, 3945: 2321963, 3947: 2322157}
[2026-03-04 15:31:11] 2026-03-04 14:30:38,559 | INFO     | --------------------------------------------------
[2026-03-04 15:31:11] 2026-03-04 14:30:38,559 | INFO     | 
[2026-03-04 15:31:11] 2026-03-04 14:30:38,559 | INFO     | executing command: ls -lF /var/lib/boinc_data/boinc-01/slots/1
[2026-03-04 15:31:11] 2026-03-04 14:30:38,584 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-04 15:31:11] 2026-03-04 14:30:38,586 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-04 15:31:11] 2026-03-04 14:30:38,586 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-04 15:31:11] 2026-03-04 14:30:38,586 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-04 15:31:11] 2026-03-04 14:30:38,586 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-04 15:31:11] 2026-03-04 14:30:38,586 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-04 15:31:11] 2026-03-04 14:30:38,587 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-04 15:31:11] 2026-03-04 14:30:38,587 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-04 15:31:11] 2026-03-04 14:30:38,587 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-04 15:31:11] 2026-03-04 14:30:38,588 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-04 15:31:11] 2026-03-04 14:30:38,588 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-04 15:31:11] 2026-03-04 14:30:38,588 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-04 15:31:11] 2026-03-04 14:30:38,589 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-04 15:31:11] 2026-03-04 14:30:38,589 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-04 15:31:11] 2026-03-04 14:30:38,589 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-04 15:31:11] 2026-03-04 14:30:38,589 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-04 15:31:11] 2026-03-04 14:30:38,591 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-04 15:31:11] 2026-03-04 14:30:38,591 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-04 15:31:11] 2026-03-04 14:30:38,591 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-04 15:31:11] 2026-03-04 14:30:38,591 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-04 15:31:11] 2026-03-04 14:30:38,592 | INFO     | job 7035356109 has completed (purged errors)
[2026-03-04 15:31:11] 2026-03-04 14:30:38,592 | INFO     | overall cleanup function is called
[2026-03-04 15:31:11] 2026-03-04 14:30:39,599 | INFO     | --- collectZombieJob: --- 10, [3774858]
[2026-03-04 15:31:11] 2026-03-04 14:30:39,599 | INFO     | zombie collector waiting for pid 3774858
[2026-03-04 15:31:11] 2026-03-04 14:30:39,599 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-04 15:31:11] 2026-03-04 14:30:39,599 | INFO     | collected zombie processes
[2026-03-04 15:31:11] 2026-03-04 14:30:39,599 | INFO     | will attempt to kill all subprocesses of pid=3774858
[2026-03-04 15:31:11] 2026-03-04 14:30:39,738 | INFO     | process IDs to be killed: [3774858] (in reverse order)
[2026-03-04 15:31:11] 2026-03-04 14:30:39,818 | WARNING  | found no corresponding commands to process id(s)
[2026-03-04 15:31:11] 2026-03-04 14:30:39,819 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-04 15:31:11] 2026-03-04 14:30:39,823 | INFO     | did not find any defunct processes belonging to 3774858
[2026-03-04 15:31:11] 2026-03-04 14:30:39,826 | INFO     | did not find any defunct processes belonging to 3774858
[2026-03-04 15:31:11] 2026-03-04 14:30:39,827 | INFO     | ready for new job
[2026-03-04 15:31:11] 2026-03-04 14:30:39,827 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-04 15:31:11] 2026-03-04 14:30:39,828 | INFO     | **************************************
[2026-03-04 15:31:11] 2026-03-04 14:30:39,829 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-04 15:31:11] 2026-03-04 14:30:39,829 | INFO     | **************************************
[2026-03-04 15:31:11] 2026-03-04 14:30:39,829 | INFO     | 
[2026-03-04 15:31:11] 2026-03-04 14:30:39,829 | INFO     | pilot is running in a VM
[2026-03-04 15:31:11] 2026-03-04 14:30:39,829 | INFO     | architecture information:
[2026-03-04 15:31:11] 2026-03-04 14:30:39,830 | INFO     | executing command: cat /etc/os-release
[2026-03-04 15:31:11] 2026-03-04 14:30:39,846 | INFO     | cat /etc/os-release:
[2026-03-04 15:31:11] NAME="CentOS Linux"
[2026-03-04 15:31:11] VERSION="7 (Core)"
[2026-03-04 15:31:11] ID="centos"
[2026-03-04 15:31:11] ID_LIKE="rhel fedora"
[2026-03-04 15:31:11] VERSION_ID="7"
[2026-03-04 15:31:11] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-04 15:31:11] ANSI_COLOR="0;31"
[2026-03-04 15:31:11] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-04 15:31:11] HOME_URL="https://www.centos.org/"
[2026-03-04 15:31:11] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-04 15:31:11] 
[2026-03-04 15:31:11] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-04 15:31:11] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-04 15:31:11] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-04 15:31:11] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-04 15:31:11] 
[2026-03-04 15:31:11] 2026-03-04 14:30:39,846 | INFO     | **************************************
[2026-03-04 15:31:11] 2026-03-04 14:30:40,350 | INFO     | executing command: df -mP /var/lib/boinc_data/boinc-01/slots/1
[2026-03-04 15:31:11] 2026-03-04 14:30:40,366 | INFO     | sufficient remaining disk space (143626600448 B)
[2026-03-04 15:31:11] 2026-03-04 14:30:40,367 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-04 15:31:11] 2026-03-04 14:30:40,367 | INFO     | current server update state: UPDATING_FINAL
[2026-03-04 15:31:11] 2026-03-04 14:30:40,367 | INFO     | update_server=False
[2026-03-04 15:31:11] 2026-03-04 14:30:40,367 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-04 15:31:11] 2026-03-04 14:30:40,367 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-04 15:31:11] 2026-03-04 14:30:40,368 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-04 15:31:11] 2026-03-04 14:30:40,368 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-04 15:31:11] 2026-03-04 14:30:40,629 | INFO     | all payload control threads have been joined
[2026-03-04 15:31:11] 2026-03-04 14:30:41,175 | INFO     | all job control threads have been joined
[2026-03-04 15:31:11] 2026-03-04 14:30:41,373 | INFO     | [job] queue monitor thread has finished
[2026-03-04 15:31:11] 2026-03-04 14:30:41,373 | INFO     | [job] retrieve thread has finished
[2026-03-04 15:31:11] 2026-03-04 14:30:41,415 | INFO     | all data control threads have been joined
[2026-03-04 15:31:11] 2026-03-04 14:30:41,635 | INFO     | [payload] control thread has finished
[2026-03-04 15:31:11] 2026-03-04 14:30:41,711 | INFO     | [payload] execute_payloads thread has finished
[2026-03-04 15:31:11] 2026-03-04 14:30:42,023 | INFO     | [payload] validate_post thread has finished
[2026-03-04 15:31:11] 2026-03-04 14:30:42,180 | INFO     | [job] control thread has finished
[2026-03-04 15:31:11] 2026-03-04 14:30:42,215 | INFO     | [job] validate thread has finished
[2026-03-04 15:31:11] 2026-03-04 14:30:42,221 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-04 15:31:11] 2026-03-04 14:30:42,316 | INFO     | [payload] validate_pre thread has finished
[2026-03-04 15:31:11] 2026-03-04 14:30:42,333 | INFO     | [job] create_data_payload thread has finished
[2026-03-04 15:31:11] 2026-03-04 14:30:42,374 | INFO     | [data] copytool_out thread has finished
[2026-03-04 15:31:11] 2026-03-04 14:30:42,421 | INFO     | [data] control thread has finished
[2026-03-04 15:31:11] 2026-03-04 14:30:42,533 | INFO     | [data] copytool_in thread has finished
[2026-03-04 15:31:11] 2026-03-04 14:30:42,741 | INFO     | [payload] failed_post thread has finished
[2026-03-04 15:31:11] 2026-03-04 14:30:43,212 | WARNING  | process 3774858 can no longer be monitored (due to stat problems) - aborting
[2026-03-04 15:31:11] 2026-03-04 14:30:43,326 | INFO     | using path: /var/lib/boinc_data/boinc-01/slots/1/memory_monitor_summary.json (trf name=prmon)
[2026-03-04 15:31:11] 2026-03-04 14:30:43,446 | INFO     | number of running child processes to parent process 3774858: 1
[2026-03-04 15:31:11] 2026-03-04 14:30:43,446 | INFO     | maximum number of monitored processes: 6
[2026-03-04 15:31:11] 2026-03-04 14:30:43,446 | INFO     | aborting job monitoring since job object (job id=7035356109) has expired
[2026-03-04 15:31:11] 2026-03-04 14:30:43,446 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-04 15:31:11] 2026-03-04 14:30:43,446 | INFO     | will abort loop
[2026-03-04 15:31:11] 2026-03-04 14:30:44,373 | INFO     | [data] queue_monitor thread has finished
[2026-03-04 15:31:11] 2026-03-04 14:30:44,452 | INFO     | [job] job monitor thread has finished
[2026-03-04 15:31:11] 2026-03-04 14:30:45,813 | INFO     | [monitor] cgroup control has ended
[2026-03-04 15:31:11] 2026-03-04 14:30:47,150 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 131374307026752)>', '<ExcThread(monitor, started 131373436229376)>']
[2026-03-04 15:31:11] 2026-03-04 14:30:52,175 | INFO     | all workflow threads have been joined
[2026-03-04 15:31:11] 2026-03-04 14:30:52,176 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-04 15:31:11] 2026-03-04 14:30:52,176 | INFO     | traces error code: 0
[2026-03-04 15:31:11] 2026-03-04 14:30:52,177 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-04 15:31:11] 2026-03-04 14:31:10,939 | INFO     | PID=3770301 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-04 15:31:11] 2026-03-04 14:31:10,939 | INFO     | .. there are 3 such processes running
[2026-03-04 15:31:11] 2026-03-04 14:31:10,939 | INFO     | found 0 job(s) in 20 queues
[2026-03-04 15:31:11] 2026-03-04 14:31:10,939 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-04 15:31:11] 2026-03-04 14:31:10,939 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-04 15:31:11] 2026-03-04 14:31:10,939 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-04 15:31:11] 2026-03-04 14:31:10,939 | CRITICAL | thread 'MainThread' is not alive
[2026-03-04 15:31:11] 2026-03-04 14:31:10,939 | INFO     | [monitor] control thread has ended
[2026-03-04 15:31:11] 2026-03-04 14:31:11,048 [wrapper] ==== pilot stdout END ====
[2026-03-04 15:31:11] 2026-03-04 14:31:11,053 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-04 15:31:11] 2026-03-04 14:31:11,059 [wrapper] pilotpid: 3770301
[2026-03-04 15:31:11] 2026-03-04 14:31:11,064 [wrapper] Pilot exit status: 0
[2026-03-04 15:31:11] 2026-03-04 14:31:11,083 [wrapper] pandaids: 7035356109
[2026-03-04 15:31:11] 2026-03-04 14:31:11,130 [wrapper] cleanup supervisor_pilot 3817639 3770302
[2026-03-04 15:31:11] 2026-03-04 14:31:11,135 [wrapper] Test setup, not cleaning
[2026-03-04 15:31:11] 2026-03-04 14:31:11,141 [wrapper] apfmon messages muted
[2026-03-04 15:31:11] 2026-03-04 14:31:11,145 [wrapper] ==== wrapper stdout END ====
[2026-03-04 15:31:11] 2026-03-04 14:31:11,153 [wrapper] ==== wrapper stderr END ====
[2026-03-04 15:31:11]  *** Error codes and diagnostics ***
[2026-03-04 15:31:11]     "exeErrorCode": 0,
[2026-03-04 15:31:11]     "exeErrorDiag": "",
[2026-03-04 15:31:11]     "pilotErrorCode": 0,
[2026-03-04 15:31:11]     "pilotErrorDiag": "",
[2026-03-04 15:31:11]  *** Listing of results directory ***
[2026-03-04 15:31:11] insgesamt 494156
[2026-03-04 15:31:11] -rw-r--r-- 1 yeti boinc    584627 M&#195;&#164;r  1 18:22 pilot3.tar.gz
[2026-03-04 15:31:11] -rwx------ 1 yeti boinc     36322 M&#195;&#164;r  1 18:23 runpilot2-wrapper.sh
[2026-03-04 15:31:11] -rw-r--r-- 1 yeti boinc      5111 M&#195;&#164;r  1 18:24 queuedata.json
[2026-03-04 15:31:11] -rw-r--r-- 1 yeti boinc       100 M&#195;&#164;r  4 14:24 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-04 15:31:11] -rwxr-xr-x 1 yeti boinc      7986 M&#195;&#164;r  4 14:24 run_atlas
[2026-03-04 15:31:11] -rw-r--r-- 1 yeti boinc       105 M&#195;&#164;r  4 14:24 job.xml
[2026-03-04 15:31:11] -rw-r--r-- 2 yeti boinc 280879816 M&#195;&#164;r  4 14:24 EVNT.48220117._000108.pool.root.1
[2026-03-04 15:31:11] -rw-r--r-- 2 yeti boinc     15845 M&#195;&#164;r  4 14:24 start_atlas.sh
[2026-03-04 15:31:11] drwxrwx--x 2 yeti boinc      4096 M&#195;&#164;r  4 14:24 shared
[2026-03-04 15:31:11] -rw-r--r-- 2 yeti boinc    597972 M&#195;&#164;r  4 14:24 input.tar.gz
[2026-03-04 15:31:11] -rw-r--r-- 1 yeti boinc      6732 M&#195;&#164;r  4 14:24 init_data.xml
[2026-03-04 15:31:11] -rw-r--r-- 1 yeti boinc         0 M&#195;&#164;r  4 14:24 boinc_setup_complete
[2026-03-04 15:31:11] -rw-r--r-- 1 yeti boinc         0 M&#195;&#164;r  4 14:24 boinc_lockfile
[2026-03-04 15:31:11] -rw-r--r-- 1 yeti boinc      2571 M&#195;&#164;r  4 14:24 pandaJob.out
[2026-03-04 15:31:11] -rw------- 1 yeti boinc        52 M&#195;&#164;r  4 14:24 setup.sh.local
[2026-03-04 15:31:11] -rw------- 1 yeti boinc    997352 M&#195;&#164;r  4 14:24 agis_schedconf.cvmfs.json
[2026-03-04 15:31:11] -rw------- 1 yeti boinc   1516092 M&#195;&#164;r  4 14:24 agis_ddmendpoints.agis.ALL.json
[2026-03-04 15:31:11] -rw------- 1 yeti boinc       425 M&#195;&#164;r  4 14:24 workernode_map.json
[2026-03-04 15:31:11] drwx------ 5 yeti boinc      4096 M&#195;&#164;r  4 14:24 pilot3
[2026-03-04 15:31:11] -rw------- 1 yeti boinc        95 M&#195;&#164;r  4 15:30 pilot_heartbeat.json
[2026-03-04 15:31:11] -rw------- 1 yeti boinc 219476755 M&#195;&#164;r  4 15:30 HITS.48838447._002626.pool.root.1
[2026-03-04 15:31:11] -rw-r--r-- 1 yeti boinc       529 M&#195;&#164;r  4 15:30 boinc_task_state.xml
[2026-03-04 15:31:11] -rw------- 1 yeti boinc      1016 M&#195;&#164;r  4 15:30 memory_monitor_summary.json
[2026-03-04 15:31:11] -rw------- 1 yeti boinc    257253 M&#195;&#164;r  4 15:30 log.48838447._002626.job.log.tgz.1
[2026-03-04 15:31:11] -rw------- 1 yeti boinc      6286 M&#195;&#164;r  4 15:30 heartbeat.json
[2026-03-04 15:31:11] -rw-r--r-- 1 yeti boinc      8192 M&#195;&#164;r  4 15:31 boinc_mmap_file
[2026-03-04 15:31:11] -rw-r--r-- 1 yeti boinc        27 M&#195;&#164;r  4 15:31 wrapper_checkpoint.txt
[2026-03-04 15:31:11] -rw------- 1 yeti boinc       892 M&#195;&#164;r  4 15:31 pilotlog.txt
[2026-03-04 15:31:11] -rw------- 1 yeti boinc    605769 M&#195;&#164;r  4 15:31 log.48838447._002626.job.log.1
[2026-03-04 15:31:11] -rw------- 1 yeti boinc       357 M&#195;&#164;r  4 15:31 output.list
[2026-03-04 15:31:11] -rw-r--r-- 1 yeti boinc       620 M&#195;&#164;r  4 15:31 runtime_log
[2026-03-04 15:31:11] -rw------- 1 yeti boinc    880640 M&#195;&#164;r  4 15:31 result.tar.gz
[2026-03-04 15:31:11] -rw-r--r-- 1 yeti boinc      9556 M&#195;&#164;r  4 15:31 runtime_log.err
[2026-03-04 15:31:11] -rw------- 1 yeti boinc       638 M&#195;&#164;r  4 15:31 IeUNDmygzG9n9Rq4apOajLDm4fhM0noT9bVooX4SDmXF9KDmEa2gim.diag
[2026-03-04 15:31:11] -rw-r--r-- 1 yeti boinc     21428 M&#195;&#164;r  4 15:31 stderr.txt
[2026-03-04 15:31:11] HITS file was successfully produced:
[2026-03-04 15:31:11] -rw------- 1 yeti boinc 219476755 M&#195;&#164;r  4 15:30 shared/HITS.pool.root.1
[2026-03-04 15:31:11]  *** Contents of shared directory: ***
[2026-03-04 15:31:11] insgesamt 490104
[2026-03-04 15:31:11] -rw-r--r-- 2 yeti boinc 280879816 M&#195;&#164;r  4 14:24 ATLAS.root_0
[2026-03-04 15:31:11] -rw-r--r-- 2 yeti boinc     15845 M&#195;&#164;r  4 14:24 start_atlas.sh
[2026-03-04 15:31:11] -rw-r--r-- 2 yeti boinc    597972 M&#195;&#164;r  4 14:24 input.tar.gz
[2026-03-04 15:31:11] -rw------- 1 yeti boinc 219476755 M&#195;&#164;r  4 15:30 HITS.pool.root.1
[2026-03-04 15:31:11] -rw------- 1 yeti boinc    880640 M&#195;&#164;r  4 15:31 result.tar.gz
15:31:12 (3766273): run_atlas exited; CPU time 14763.523113
15:31:12 (3766273): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN