Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
20:54:52 (1440245): wrapper (7.7.26015): starting
20:54:52 (1440245): wrapper: running run_atlas (--nthreads 3)
[2026-03-04 20:54:52] Arguments: --nthreads 3
[2026-03-04 20:54:52] Threads: 3
[2026-03-04 20:54:52] Checking for CVMFS
[2026-03-04 20:54:53] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-04 20:54:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-04 20:54:53] Running cvmfs_config stat atlas.cern.ch
[2026-03-04 20:54:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-04 20:54:53] 2.9.2.0 36558 10368 84700 156889 0 50 27842254 36864001 0 130560 0 3949647 99.981 384143 15728 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-04 20:54:53] CVMFS is ok
[2026-03-04 20:54:53] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-04 20:54:53] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-04 20:54:53] Further information can be found at the LHC@home message board.
[2026-03-04 20:54:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-04 20:54:53] Checking for apptainer binary...
[2026-03-04 20:54:53] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-04 20:54:53] Running /usr/bin/apptainer --version
[2026-03-04 20:54:53] apptainer version 1.4.1-1.1
[2026-03-04 20:54:53] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-04 20:54:53] magicA252
[2026-03-04 20:54:53] apptainer works
[2026-03-04 20:54:53] Set ATHENA_PROC_NUMBER=3
[2026-03-04 20:54:53] Set ATHENA_CORE_NUMBER=3
[2026-03-04 20:54:53] Starting ATLAS job with PandaID=7037108548
[2026-03-04 20:54:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-04 22:29:17]  *** The last 200 lines of the pilot log: ***
[2026-03-04 22:29:17] 2026-03-04 21:28:38,330 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-04 22:29:17] 2026-03-04 21:28:38,330 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-04 22:29:17] 2026-03-04 21:28:38,330 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-04 22:29:17] 2026-03-04 21:28:38,330 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-04 22:29:17] 2026-03-04 21:28:38,330 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-04 22:29:17] 2026-03-04 21:28:38,330 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-04 22:29:17] 2026-03-04 21:28:38,330 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-04 22:29:17] 2026-03-04 21:28:38,331 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-04 22:29:17] 2026-03-04 21:28:38,331 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-04 22:29:17] 2026-03-04 21:28:38,331 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-04 22:29:17] 2026-03-04 21:28:38,331 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-04 22:29:17] 2026-03-04 21:28:38,331 | INFO     | job 7037108548 has completed (purged errors)
[2026-03-04 22:29:17] 2026-03-04 21:28:38,331 | INFO     | overall cleanup function is called
[2026-03-04 22:29:17] 2026-03-04 21:28:39,096 | WARNING  | process 1448722 can no longer be monitored (due to stat problems) - aborting
[2026-03-04 22:29:17] 2026-03-04 21:28:39,124 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-04 22:29:17] 2026-03-04 21:28:39,159 | INFO     | number of running child processes to parent process 1448722: 1
[2026-03-04 22:29:17] 2026-03-04 21:28:39,159 | INFO     | maximum number of monitored processes: 6
[2026-03-04 22:29:17] 2026-03-04 21:28:39,159 | INFO     | aborting job monitoring since job object (job id=7037108548) has expired
[2026-03-04 22:29:17] 2026-03-04 21:28:39,337 | INFO     | --- collectZombieJob: --- 10, [1448722]
[2026-03-04 22:29:17] 2026-03-04 21:28:39,337 | INFO     | zombie collector waiting for pid 1448722
[2026-03-04 22:29:17] 2026-03-04 21:28:39,338 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-04 22:29:17] 2026-03-04 21:28:39,338 | INFO     | collected zombie processes
[2026-03-04 22:29:17] 2026-03-04 21:28:39,338 | INFO     | will attempt to kill all subprocesses of pid=1448722
[2026-03-04 22:29:17] 2026-03-04 21:28:39,377 | INFO     | process IDs to be killed: [1448722] (in reverse order)
[2026-03-04 22:29:17] 2026-03-04 21:28:39,402 | WARNING  | found no corresponding commands to process id(s)
[2026-03-04 22:29:17] 2026-03-04 21:28:39,402 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-04 22:29:17] 2026-03-04 21:28:39,403 | INFO     | did not find any defunct processes belonging to 1448722
[2026-03-04 22:29:17] 2026-03-04 21:28:39,404 | INFO     | did not find any defunct processes belonging to 1448722
[2026-03-04 22:29:17] 2026-03-04 21:28:39,404 | INFO     | ready for new job
[2026-03-04 22:29:17] 2026-03-04 21:28:39,404 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-04 22:29:17] 2026-03-04 21:28:39,405 | INFO     | **************************************
[2026-03-04 22:29:17] 2026-03-04 21:28:39,405 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-04 22:29:17] 2026-03-04 21:28:39,405 | INFO     | **************************************
[2026-03-04 22:29:17] 2026-03-04 21:28:39,405 | INFO     | 
[2026-03-04 22:29:17] 2026-03-04 21:28:39,405 | INFO     | architecture information:
[2026-03-04 22:29:17] 2026-03-04 21:28:39,406 | INFO     | executing command: cat /etc/os-release
[2026-03-04 22:29:17] 2026-03-04 21:28:39,415 | INFO     | cat /etc/os-release:
[2026-03-04 22:29:17] NAME="CentOS Linux"
[2026-03-04 22:29:17] VERSION="7 (Core)"
[2026-03-04 22:29:17] ID="centos"
[2026-03-04 22:29:17] ID_LIKE="rhel fedora"
[2026-03-04 22:29:17] VERSION_ID="7"
[2026-03-04 22:29:17] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-04 22:29:17] ANSI_COLOR="0;31"
[2026-03-04 22:29:17] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-04 22:29:17] HOME_URL="https://www.centos.org/"
[2026-03-04 22:29:17] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-04 22:29:17] 
[2026-03-04 22:29:17] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-04 22:29:17] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-04 22:29:17] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-04 22:29:17] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-04 22:29:17] 
[2026-03-04 22:29:17] 2026-03-04 21:28:39,415 | INFO     | **************************************
[2026-03-04 22:29:17] 2026-03-04 21:28:39,918 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-04 22:29:17] 2026-03-04 21:28:39,932 | INFO     | sufficient remaining disk space (376388452352 B)
[2026-03-04 22:29:17] 2026-03-04 21:28:39,932 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-04 22:29:17] 2026-03-04 21:28:39,932 | INFO     | current server update state: UPDATING_FINAL
[2026-03-04 22:29:17] 2026-03-04 21:28:39,932 | INFO     | update_server=False
[2026-03-04 22:29:17] 2026-03-04 21:28:39,932 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-04 22:29:17] 2026-03-04 21:28:39,932 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-04 22:29:17] 2026-03-04 21:28:39,932 | INFO     | will abort loop
[2026-03-04 22:29:17] 2026-03-04 21:28:39,932 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-04 22:29:17] 2026-03-04 21:28:40,081 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-04 22:29:17] 2026-03-04 21:28:40,148 | INFO     | all data control threads have been joined
[2026-03-04 22:29:17] 2026-03-04 21:28:40,678 | INFO     | all payload control threads have been joined
[2026-03-04 22:29:17] 2026-03-04 21:28:40,937 | INFO     | [job] queue monitor thread has finished
[2026-03-04 22:29:17] 2026-03-04 21:28:40,937 | INFO     | [job] retrieve thread has finished
[2026-03-04 22:29:17] 2026-03-04 21:28:40,938 | INFO     | [job] job monitor thread has finished
[2026-03-04 22:29:17] 2026-03-04 21:28:41,011 | INFO     | [payload] validate_pre thread has finished
[2026-03-04 22:29:17] 2026-03-04 21:28:41,154 | INFO     | [data] control thread has finished
[2026-03-04 22:29:17] 2026-03-04 21:28:41,218 | INFO     | [data] copytool_in thread has finished
[2026-03-04 22:29:17] 2026-03-04 21:28:41,256 | INFO     | [payload] execute_payloads thread has finished
[2026-03-04 22:29:17] 2026-03-04 21:28:41,469 | INFO     | all job control threads have been joined
[2026-03-04 22:29:17] 2026-03-04 21:28:41,679 | INFO     | [payload] control thread has finished
[2026-03-04 22:29:17] 2026-03-04 21:28:41,692 | INFO     | [payload] validate_post thread has finished
[2026-03-04 22:29:17] 2026-03-04 21:28:42,084 | INFO     | [data] copytool_out thread has finished
[2026-03-04 22:29:17] 2026-03-04 21:28:42,303 | INFO     | [job] create_data_payload thread has finished
[2026-03-04 22:29:17] 2026-03-04 21:28:42,369 | INFO     | [job] validate thread has finished
[2026-03-04 22:29:17] 2026-03-04 21:28:42,429 | INFO     | [payload] failed_post thread has finished
[2026-03-04 22:29:17] 2026-03-04 21:28:42,474 | INFO     | [job] control thread has finished
[2026-03-04 22:29:17] 2026-03-04 21:28:43,205 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-04 22:29:17] 2026-03-04 21:28:47,207 | INFO     | [data] queue_monitor thread has finished
[2026-03-04 22:29:17] 2026-03-04 21:28:50,799 | INFO     | job.realtimelogging is not enabled
[2026-03-04 22:29:17] 2026-03-04 21:28:51,805 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-04 22:29:17] 2026-03-04 21:29:09,440 | INFO     | PID=1444293 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-04 22:29:17] 2026-03-04 21:29:09,440 | INFO     | found 0 job(s) in 20 queues
[2026-03-04 22:29:17] 2026-03-04 21:29:09,440 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-04 22:29:17] 2026-03-04 21:29:09,440 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-04 22:29:17] 2026-03-04 21:29:11,802 | INFO     | [monitor] cgroup control has ended
[2026-03-04 22:29:17] 2026-03-04 21:29:12,218 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140485289035584)>', '<ExcThread(monitor, started 140484789909248)>']
[2026-03-04 22:29:17] 2026-03-04 21:29:12,446 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-04 22:29:17] 2026-03-04 21:29:12,446 | INFO     | [monitor] control thread has ended
[2026-03-04 22:29:17] 2026-03-04 21:29:17,221 | INFO     | all workflow threads have been joined
[2026-03-04 22:29:17] 2026-03-04 21:29:17,221 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-04 22:29:17] 2026-03-04 21:29:17,221 | INFO     | traces error code: 0
[2026-03-04 22:29:17] 2026-03-04 21:29:17,221 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-04 22:29:17] 2026-03-04 21:29:17,270 [wrapper] ==== pilot stdout END ====
[2026-03-04 22:29:17] 2026-03-04 21:29:17,273 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-04 22:29:17] 2026-03-04 21:29:17,275 [wrapper] pilotpid: 1444293
[2026-03-04 22:29:17] 2026-03-04 21:29:17,278 [wrapper] Pilot exit status: 0
[2026-03-04 22:29:17] 2026-03-04 21:29:17,286 [wrapper] pandaids: 7037108548
[2026-03-04 22:29:17] 2026-03-04 21:29:17,303 [wrapper] cleanup supervisor_pilot 1454572 1444294
[2026-03-04 22:29:17] 2026-03-04 21:29:17,305 [wrapper] Test setup, not cleaning
[2026-03-04 22:29:17] 2026-03-04 21:29:17,308 [wrapper] apfmon messages muted
[2026-03-04 22:29:17] 2026-03-04 21:29:17,310 [wrapper] ==== wrapper stdout END ====
[2026-03-04 22:29:17] 2026-03-04 21:29:17,313 [wrapper] ==== wrapper stderr END ====
[2026-03-04 22:29:17]  *** Error codes and diagnostics ***
[2026-03-04 22:29:17]     "exeErrorCode": 0,
[2026-03-04 22:29:17]     "exeErrorDiag": "",
[2026-03-04 22:29:17]     "pilotErrorCode": 0,
[2026-03-04 22:29:17]     "pilotErrorDiag": "",
[2026-03-04 22:29:17]  *** Listing of results directory ***
[2026-03-04 22:29:17] total 492972
[2026-03-04 22:29:17] -rwx------ 1 boinc boinc     36322 Mar  4 03:47 runpilot2-wrapper.sh
[2026-03-04 22:29:17] -rw-r--r-- 1 boinc boinc      5111 Mar  4 03:48 queuedata.json
[2026-03-04 22:29:17] -rw-r--r-- 1 boinc boinc    584627 Mar  4 03:48 pilot3.tar.gz
[2026-03-04 22:29:17] -rw-r--r-- 1 boinc boinc       100 Mar  4 20:54 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-04 22:29:17] -rwxr-xr-x 1 boinc boinc      7986 Mar  4 20:54 run_atlas
[2026-03-04 22:29:17] -rw-r--r-- 1 boinc boinc       105 Mar  4 20:54 job.xml
[2026-03-04 22:29:17] -rw-r--r-- 2 boinc boinc 281549965 Mar  4 20:54 EVNT.48220221._000201.pool.root.1
[2026-03-04 22:29:17] -rw-r--r-- 2 boinc boinc    597958 Mar  4 20:54 input.tar.gz
[2026-03-04 22:29:17] -rw-r--r-- 2 boinc boinc     15845 Mar  4 20:54 start_atlas.sh
[2026-03-04 22:29:17] drwxrwx--x 2 boinc boinc      4096 Mar  4 20:54 shared
[2026-03-04 22:29:17] -rw-r--r-- 1 boinc boinc         0 Mar  4 20:54 boinc_setup_complete
[2026-03-04 22:29:17] -rw-r--r-- 1 boinc boinc      6449 Mar  4 20:54 init_data.xml
[2026-03-04 22:29:17] -rw-r--r-- 1 boinc boinc         0 Mar  4 20:54 boinc_lockfile
[2026-03-04 22:29:17] -rw-r--r-- 1 boinc boinc      2562 Mar  4 20:54 pandaJob.out
[2026-03-04 22:29:17] -rw------- 1 boinc boinc    997757 Mar  4 20:55 agis_schedconf.cvmfs.json
[2026-03-04 22:29:17] -rw------- 1 boinc boinc   1521291 Mar  4 20:55 agis_ddmendpoints.agis.ALL.json
[2026-03-04 22:29:17] -rw------- 1 boinc boinc       426 Mar  4 20:55 workernode_map.json
[2026-03-04 22:29:17] drwx------ 5 boinc boinc      4096 Mar  4 20:55 pilot3
[2026-03-04 22:29:17] -rw------- 1 boinc boinc 217172008 Mar  4 22:28 HITS.48838586._004981.pool.root.1
[2026-03-04 22:29:17] -rw-r--r-- 1 boinc boinc       529 Mar  4 22:28 boinc_task_state.xml
[2026-03-04 22:29:17] -rw------- 1 boinc boinc        95 Mar  4 22:28 pilot_heartbeat.json
[2026-03-04 22:29:17] -rw------- 1 boinc boinc      1017 Mar  4 22:28 memory_monitor_summary.json
[2026-03-04 22:29:17] -rw------- 1 boinc boinc    261311 Mar  4 22:28 log.48838586._004981.job.log.tgz.1
[2026-03-04 22:29:17] -rw------- 1 boinc boinc      6303 Mar  4 22:28 heartbeat.json
[2026-03-04 22:29:17] -rw-r--r-- 1 boinc boinc        27 Mar  4 22:28 wrapper_checkpoint.txt
[2026-03-04 22:29:17] -rw-r--r-- 1 boinc boinc      8192 Mar  4 22:28 boinc_mmap_file
[2026-03-04 22:29:17] -rw------- 1 boinc boinc      4822 Mar  4 22:29 pilotlog.txt
[2026-03-04 22:29:17] -rw------- 1 boinc boinc    817833 Mar  4 22:29 log.48838586._004981.job.log.1
[2026-03-04 22:29:17] -rw------- 1 boinc boinc       357 Mar  4 22:29 output.list
[2026-03-04 22:29:17] -rw-r--r-- 1 boinc boinc       620 Mar  4 22:29 runtime_log
[2026-03-04 22:29:17] -rw------- 1 boinc boinc   1095680 Mar  4 22:29 result.tar.gz
[2026-03-04 22:29:17] -rw-r--r-- 1 boinc boinc      8911 Mar  4 22:29 runtime_log.err
[2026-03-04 22:29:17] -rw------- 1 boinc boinc       660 Mar  4 22:29 g0pLDmJSrH9n9Rq4apOajLDm4fhM0noT9bVooX4SDmsDHLDmkqzT3m.diag
[2026-03-04 22:29:17] -rw-r--r-- 1 boinc boinc     12661 Mar  4 22:29 stderr.txt
[2026-03-04 22:29:17] HITS file was successfully produced:
[2026-03-04 22:29:17] -rw------- 1 boinc boinc 217172008 Mar  4 22:28 shared/HITS.pool.root.1
[2026-03-04 22:29:17]  *** Contents of shared directory: ***
[2026-03-04 22:29:17] total 488712
[2026-03-04 22:29:17] -rw-r--r-- 2 boinc boinc 281549965 Mar  4 20:54 ATLAS.root_0
[2026-03-04 22:29:17] -rw-r--r-- 2 boinc boinc    597958 Mar  4 20:54 input.tar.gz
[2026-03-04 22:29:17] -rw-r--r-- 2 boinc boinc     15845 Mar  4 20:54 start_atlas.sh
[2026-03-04 22:29:17] -rw------- 1 boinc boinc 217172008 Mar  4 22:28 HITS.pool.root.1
[2026-03-04 22:29:17] -rw------- 1 boinc boinc   1095680 Mar  4 22:29 result.tar.gz
22:29:19 (1440245): run_atlas exited; CPU time 16180.907295
22:29:19 (1440245): called boinc_finish(0)

</stderr_txt>
]]>

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