Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
22:45:44 (851175): wrapper (7.7.26015): starting
22:45:44 (851175): wrapper: running run_atlas (--nthreads 3)
[2026-03-04 22:45:44] Arguments: --nthreads 3
[2026-03-04 22:45:44] Threads: 3
[2026-03-04 22:45:44] Checking for CVMFS
[2026-03-04 22:45:44] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-04 22:45:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-04 22:45:45] Running cvmfs_config stat atlas.cern.ch
[2026-03-04 22:45:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-04 22:45:45] 2.9.2.0 3705770 10489 83836 156891 1 50 35614323 36864001 0 130560 0 3676993 99.974 463746 4841 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-04 22:45:45] CVMFS is ok
[2026-03-04 22:45:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-04 22:45:45] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-04 22:45:45] Further information can be found at the LHC@home message board.
[2026-03-04 22:45:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-04 22:45:45] Checking for apptainer binary...
[2026-03-04 22:45:45] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-04 22:45:45] Running /usr/bin/apptainer --version
[2026-03-04 22:45:45] apptainer version 1.4.1-1.1
[2026-03-04 22:45:45] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-04 22:45:45] atlasA223
[2026-03-04 22:45:45] apptainer works
[2026-03-04 22:45:45] Set ATHENA_PROC_NUMBER=3
[2026-03-04 22:45:45] Set ATHENA_CORE_NUMBER=3
[2026-03-04 22:45:45] Starting ATLAS job with PandaID=7036980665
[2026-03-04 22:45:45] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-05 00:25:08]  *** The last 200 lines of the pilot log: ***
[2026-03-05 00:25:08] 2026-03-04 23:24:35,967 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-05 00:25:08] 2026-03-04 23:24:35,967 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-05 00:25:08] 2026-03-04 23:24:35,967 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-05 00:25:08] 2026-03-04 23:24:35,967 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-05 00:25:08] 2026-03-04 23:24:35,967 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-05 00:25:08] 2026-03-04 23:24:35,967 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-05 00:25:08] 2026-03-04 23:24:35,967 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-05 00:25:08] 2026-03-04 23:24:35,967 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-05 00:25:08] 2026-03-04 23:24:35,967 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-05 00:25:08] 2026-03-04 23:24:35,967 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-05 00:25:08] 2026-03-04 23:24:35,967 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-05 00:25:08] 2026-03-04 23:24:35,967 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-05 00:25:08] 2026-03-04 23:24:35,967 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-05 00:25:08] 2026-03-04 23:24:35,967 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-05 00:25:08] 2026-03-04 23:24:35,967 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-05 00:25:08] 2026-03-04 23:24:35,967 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-05 00:25:08] 2026-03-04 23:24:35,967 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-05 00:25:08] 2026-03-04 23:24:35,967 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-05 00:25:08] 2026-03-04 23:24:35,967 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-05 00:25:08] 2026-03-04 23:24:35,967 | INFO     | job 7036980665 has completed (purged errors)
[2026-03-05 00:25:08] 2026-03-04 23:24:35,967 | INFO     | overall cleanup function is called
[2026-03-05 00:25:08] 2026-03-04 23:24:36,974 | INFO     | --- collectZombieJob: --- 10, [859646]
[2026-03-05 00:25:08] 2026-03-04 23:24:36,974 | INFO     | zombie collector waiting for pid 859646
[2026-03-05 00:25:08] 2026-03-04 23:24:36,974 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-05 00:25:08] 2026-03-04 23:24:36,974 | INFO     | collected zombie processes
[2026-03-05 00:25:08] 2026-03-04 23:24:36,974 | INFO     | will attempt to kill all subprocesses of pid=859646
[2026-03-05 00:25:08] 2026-03-04 23:24:37,029 | INFO     | process IDs to be killed: [859646] (in reverse order)
[2026-03-05 00:25:08] 2026-03-04 23:24:37,056 | WARNING  | found no corresponding commands to process id(s)
[2026-03-05 00:25:08] 2026-03-04 23:24:37,056 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-05 00:25:08] 2026-03-04 23:24:37,058 | INFO     | did not find any defunct processes belonging to 859646
[2026-03-05 00:25:08] 2026-03-04 23:24:37,059 | INFO     | did not find any defunct processes belonging to 859646
[2026-03-05 00:25:08] 2026-03-04 23:24:37,059 | INFO     | ready for new job
[2026-03-05 00:25:08] 2026-03-04 23:24:37,059 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-05 00:25:08] 2026-03-04 23:24:37,060 | INFO     | **************************************
[2026-03-05 00:25:08] 2026-03-04 23:24:37,060 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-05 00:25:08] 2026-03-04 23:24:37,060 | INFO     | **************************************
[2026-03-05 00:25:08] 2026-03-04 23:24:37,060 | INFO     | 
[2026-03-05 00:25:08] 2026-03-04 23:24:37,060 | INFO     | architecture information:
[2026-03-05 00:25:08] 2026-03-04 23:24:37,061 | INFO     | executing command: cat /etc/os-release
[2026-03-05 00:25:08] 2026-03-04 23:24:37,070 | INFO     | cat /etc/os-release:
[2026-03-05 00:25:08] NAME="CentOS Linux"
[2026-03-05 00:25:08] VERSION="7 (Core)"
[2026-03-05 00:25:08] ID="centos"
[2026-03-05 00:25:08] ID_LIKE="rhel fedora"
[2026-03-05 00:25:08] VERSION_ID="7"
[2026-03-05 00:25:08] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-05 00:25:08] ANSI_COLOR="0;31"
[2026-03-05 00:25:08] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-05 00:25:08] HOME_URL="https://www.centos.org/"
[2026-03-05 00:25:08] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-05 00:25:08] 
[2026-03-05 00:25:08] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-05 00:25:08] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-05 00:25:08] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-05 00:25:08] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-05 00:25:08] 
[2026-03-05 00:25:08] 2026-03-04 23:24:37,070 | INFO     | **************************************
[2026-03-05 00:25:08] 2026-03-04 23:24:37,573 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-05 00:25:08] 2026-03-04 23:24:37,586 | INFO     | sufficient remaining disk space (368019767296 B)
[2026-03-05 00:25:08] 2026-03-04 23:24:37,586 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-05 00:25:08] 2026-03-04 23:24:37,586 | INFO     | current server update state: UPDATING_FINAL
[2026-03-05 00:25:08] 2026-03-04 23:24:37,586 | INFO     | update_server=False
[2026-03-05 00:25:08] 2026-03-04 23:24:37,586 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-05 00:25:08] 2026-03-04 23:24:37,586 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-05 00:25:08] 2026-03-04 23:24:37,586 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-05 00:25:08] 2026-03-04 23:24:37,586 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-05 00:25:08] 2026-03-04 23:24:37,587 | INFO     | aborting loop
[2026-03-05 00:25:08] 2026-03-04 23:24:37,602 | INFO     | all job control threads have been joined
[2026-03-05 00:25:08] 2026-03-04 23:24:38,223 | INFO     | all payload control threads have been joined
[2026-03-05 00:25:08] 2026-03-04 23:24:38,441 | INFO     | all data control threads have been joined
[2026-03-05 00:25:08] 2026-03-04 23:24:38,592 | INFO     | [job] retrieve thread has finished
[2026-03-05 00:25:08] 2026-03-04 23:24:38,592 | INFO     | [payload] validate_post thread has finished
[2026-03-05 00:25:08] 2026-03-04 23:24:38,592 | INFO     | [job] queue monitor thread has finished
[2026-03-05 00:25:08] 2026-03-04 23:24:38,592 | INFO     | [job] job monitor thread has finished
[2026-03-05 00:25:08] 2026-03-04 23:24:38,608 | INFO     | [job] control thread has finished
[2026-03-05 00:25:08] 2026-03-04 23:24:38,630 | INFO     | [data] copytool_in thread has finished
[2026-03-05 00:25:08] 2026-03-04 23:24:39,063 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-05 00:25:08] 2026-03-04 23:24:39,229 | INFO     | [payload] control thread has finished
[2026-03-05 00:25:08] 2026-03-04 23:24:39,447 | INFO     | [data] control thread has finished
[2026-03-05 00:25:08] 2026-03-04 23:24:39,470 | INFO     | [payload] execute_payloads thread has finished
[2026-03-05 00:25:08] 2026-03-04 23:24:39,593 | INFO     | [data] copytool_out thread has finished
[2026-03-05 00:25:08] 2026-03-04 23:24:39,637 | INFO     | [payload] failed_post thread has finished
[2026-03-05 00:25:08] 2026-03-04 23:24:39,751 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-05 00:25:08] 2026-03-04 23:24:39,933 | INFO     | [job] create_data_payload thread has finished
[2026-03-05 00:25:08] 2026-03-04 23:24:39,959 | INFO     | [job] validate thread has finished
[2026-03-05 00:25:08] 2026-03-04 23:24:39,990 | INFO     | [payload] validate_pre thread has finished
[2026-03-05 00:25:08] 2026-03-04 23:24:43,070 | INFO     | [data] queue_monitor thread has finished
[2026-03-05 00:25:08] 2026-03-04 23:25:01,640 | INFO     | [monitor] cgroup control has ended
[2026-03-05 00:25:08] 2026-03-04 23:25:03,262 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139757657904960)>', '<ExcThread(monitor, started 139757375207168)>']
[2026-03-05 00:25:08] 2026-03-04 23:25:08,288 | INFO     | all workflow threads have been joined
[2026-03-05 00:25:08] 2026-03-04 23:25:08,288 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-05 00:25:08] 2026-03-04 23:25:08,288 | INFO     | traces error code: 0
[2026-03-05 00:25:08] 2026-03-04 23:25:08,288 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-05 00:25:08] 2026-03-04 23:25:08,628 | INFO     | PID=855220 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-05 00:25:08] 2026-03-04 23:25:08,628 | INFO     | found 0 job(s) in 20 queues
[2026-03-05 00:25:08] 2026-03-04 23:25:08,628 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-05 00:25:08] 2026-03-04 23:25:08,628 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-05 00:25:08] 2026-03-04 23:25:08,628 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-05 00:25:08] 2026-03-04 23:25:08,628 | INFO     | [monitor] control thread has ended
[2026-03-05 00:25:08] 2026-03-04 23:25:08,676 [wrapper] ==== pilot stdout END ====
[2026-03-05 00:25:08] 2026-03-04 23:25:08,678 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-05 00:25:08] 2026-03-04 23:25:08,680 [wrapper] pilotpid: 855220
[2026-03-05 00:25:08] 2026-03-04 23:25:08,683 [wrapper] Pilot exit status: 0
[2026-03-05 00:25:08] 2026-03-04 23:25:08,690 [wrapper] pandaids: 7036980665
[2026-03-05 00:25:08] 2026-03-04 23:25:08,707 [wrapper] cleanup supervisor_pilot  868577 855221
[2026-03-05 00:25:08] 2026-03-04 23:25:08,710 [wrapper] Test setup, not cleaning
[2026-03-05 00:25:08] 2026-03-04 23:25:08,712 [wrapper] apfmon messages muted
[2026-03-05 00:25:08] 2026-03-04 23:25:08,714 [wrapper] ==== wrapper stdout END ====
[2026-03-05 00:25:08] 2026-03-04 23:25:08,717 [wrapper] ==== wrapper stderr END ====
[2026-03-05 00:25:08]  *** Error codes and diagnostics ***
[2026-03-05 00:25:08]     "exeErrorCode": 0,
[2026-03-05 00:25:08]     "exeErrorDiag": "",
[2026-03-05 00:25:08]     "pilotErrorCode": 0,
[2026-03-05 00:25:08]     "pilotErrorDiag": "",
[2026-03-05 00:25:08]  *** Listing of results directory ***
[2026-03-05 00:25:08] total 513668
[2026-03-05 00:25:08] -rw-r--r-- 1 boinc boinc    584627 Mar  4 02:08 pilot3.tar.gz
[2026-03-05 00:25:08] -rwx------ 1 boinc boinc     36322 Mar  4 02:10 runpilot2-wrapper.sh
[2026-03-05 00:25:08] -rw-r--r-- 1 boinc boinc      5111 Mar  4 02:13 queuedata.json
[2026-03-05 00:25:08] -rw-r--r-- 1 boinc boinc       100 Mar  4 22:45 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-05 00:25:08] -rwxr-xr-x 1 boinc boinc      7986 Mar  4 22:45 run_atlas
[2026-03-05 00:25:08] -rw-r--r-- 1 boinc boinc       105 Mar  4 22:45 job.xml
[2026-03-05 00:25:08] -rw-r--r-- 2 boinc boinc 294284475 Mar  4 22:45 EVNT.48220197._000338.pool.root.1
[2026-03-05 00:25:08] -rw-r--r-- 2 boinc boinc    597973 Mar  4 22:45 input.tar.gz
[2026-03-05 00:25:08] -rw-r--r-- 2 boinc boinc     15845 Mar  4 22:45 start_atlas.sh
[2026-03-05 00:25:08] drwxrwx--x 2 boinc boinc      4096 Mar  4 22:45 shared
[2026-03-05 00:25:08] -rw-r--r-- 1 boinc boinc         0 Mar  4 22:45 boinc_setup_complete
[2026-03-05 00:25:08] -rw-r--r-- 1 boinc boinc      6447 Mar  4 22:45 init_data.xml
[2026-03-05 00:25:08] -rw-r--r-- 1 boinc boinc         0 Mar  4 22:45 boinc_lockfile
[2026-03-05 00:25:08] -rw-r--r-- 1 boinc boinc      2566 Mar  4 22:45 pandaJob.out
[2026-03-05 00:25:08] -rw------- 1 boinc boinc    997757 Mar  4 22:45 agis_schedconf.cvmfs.json
[2026-03-05 00:25:08] -rw------- 1 boinc boinc   1521291 Mar  4 22:45 agis_ddmendpoints.agis.ALL.json
[2026-03-05 00:25:08] -rw------- 1 boinc boinc       425 Mar  4 22:45 workernode_map.json
[2026-03-05 00:25:08] drwx------ 5 boinc boinc      4096 Mar  4 22:45 pilot3
[2026-03-05 00:25:08] -rw------- 1 boinc boinc 225565060 Mar  5 00:24 HITS.48838577._008508.pool.root.1
[2026-03-05 00:25:08] -rw-r--r-- 1 boinc boinc       529 Mar  5 00:24 boinc_task_state.xml
[2026-03-05 00:25:08] -rw------- 1 boinc boinc        95 Mar  5 00:24 pilot_heartbeat.json
[2026-03-05 00:25:08] -rw------- 1 boinc boinc      1018 Mar  5 00:24 memory_monitor_summary.json
[2026-03-05 00:25:08] -rw------- 1 boinc boinc    255392 Mar  5 00:24 log.48838577._008508.job.log.tgz.1
[2026-03-05 00:25:08] -rw------- 1 boinc boinc      6310 Mar  5 00:24 heartbeat.json
[2026-03-05 00:25:08] -rw-r--r-- 1 boinc boinc        27 Mar  5 00:24 wrapper_checkpoint.txt
[2026-03-05 00:25:08] -rw-r--r-- 1 boinc boinc      8192 Mar  5 00:24 boinc_mmap_file
[2026-03-05 00:25:08] -rw------- 1 boinc boinc       746 Mar  5 00:25 pilotlog.txt
[2026-03-05 00:25:08] -rw------- 1 boinc boinc    858535 Mar  5 00:25 log.48838577._008508.job.log.1
[2026-03-05 00:25:08] -rw------- 1 boinc boinc       357 Mar  5 00:25 output.list
[2026-03-05 00:25:08] -rw-r--r-- 1 boinc boinc       620 Mar  5 00:25 runtime_log
[2026-03-05 00:25:08] -rw------- 1 boinc boinc   1126400 Mar  5 00:25 result.tar.gz
[2026-03-05 00:25:08] -rw-r--r-- 1 boinc boinc      8911 Mar  5 00:25 runtime_log.err
[2026-03-05 00:25:08] -rw------- 1 boinc boinc       660 Mar  5 00:25 ruKMDmMwpH9n9Rq4apOajLDm4fhM0noT9bVooX4SDmRqGLDm3bPJYn.diag
[2026-03-05 00:25:08] -rw-r--r-- 1 boinc boinc     12729 Mar  5 00:25 stderr.txt
[2026-03-05 00:25:08] HITS file was successfully produced:
[2026-03-05 00:25:08] -rw------- 1 boinc boinc 225565060 Mar  5 00:24 shared/HITS.pool.root.1
[2026-03-05 00:25:08]  *** Contents of shared directory: ***
[2026-03-05 00:25:08] total 509376
[2026-03-05 00:25:08] -rw-r--r-- 2 boinc boinc 294284475 Mar  4 22:45 ATLAS.root_0
[2026-03-05 00:25:08] -rw-r--r-- 2 boinc boinc    597973 Mar  4 22:45 input.tar.gz
[2026-03-05 00:25:08] -rw-r--r-- 2 boinc boinc     15845 Mar  4 22:45 start_atlas.sh
[2026-03-05 00:25:08] -rw------- 1 boinc boinc 225565060 Mar  5 00:24 HITS.pool.root.1
[2026-03-05 00:25:08] -rw------- 1 boinc boinc   1126400 Mar  5 00:25 result.tar.gz
00:25:31 (851175): run_atlas exited; CPU time 17088.917653
00:25:31 (851175): called boinc_finish(0)

</stderr_txt>
]]>

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