Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
19:09:09 (417393): wrapper (7.7.26015): starting
19:09:09 (417393): wrapper: running run_atlas (--nthreads 3)
[2026-03-04 19:09:09] Arguments: --nthreads 3
[2026-03-04 19:09:09] Threads: 3
[2026-03-04 19:09:09] Checking for CVMFS
[2026-03-04 19:09:09] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-04 19:09:10] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-04 19:09:10] Running cvmfs_config stat atlas.cern.ch
[2026-03-04 19:09:10] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-04 19:09:10] 2.9.2.0 12764 3348 75972 156884 3 9 27910350 36864001 0 130560 0 1129220 99.979 115006 9757 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-04 19:09:10] CVMFS is ok
[2026-03-04 19:09:10] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-04 19:09:10] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-04 19:09:10] Further information can be found at the LHC@home message board.
[2026-03-04 19:09:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-04 19:09:10] Checking for apptainer binary...
[2026-03-04 19:09:10] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-04 19:09:10] Running /usr/bin/apptainer --version
[2026-03-04 19:09:10] apptainer version 1.4.1-1.1
[2026-03-04 19:09:10] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-04 19:09:10] thA327
[2026-03-04 19:09:10] apptainer works
[2026-03-04 19:09:10] Set ATHENA_PROC_NUMBER=3
[2026-03-04 19:09:10] Set ATHENA_CORE_NUMBER=3
[2026-03-04 19:09:10] Starting ATLAS job with PandaID=7032464535
[2026-03-04 19:09:10] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-04 21:47:36]  *** The last 200 lines of the pilot log: ***
[2026-03-04 21:47:36] 2026-03-04 20:46:32,114 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-04 21:47:36] 2026-03-04 20:46:32,114 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-04 21:47:36] 2026-03-04 20:46:32,114 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-04 21:47:36] 2026-03-04 20:46:32,114 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-04 21:47:36] 2026-03-04 20:46:32,114 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-04 21:47:36] 2026-03-04 20:46:32,114 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-04 21:47:36] 2026-03-04 20:46:32,114 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-04 21:47:36] 2026-03-04 20:46:32,114 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-04 21:47:36] 2026-03-04 20:46:32,114 | INFO     | job 7032464535 has completed (purged errors)
[2026-03-04 21:47:36] 2026-03-04 20:46:32,114 | INFO     | overall cleanup function is called
[2026-03-04 21:47:36] 2026-03-04 20:46:33,120 | INFO     | --- collectZombieJob: --- 10, [425857]
[2026-03-04 21:47:36] 2026-03-04 20:46:33,121 | INFO     | zombie collector waiting for pid 425857
[2026-03-04 21:47:36] 2026-03-04 20:46:33,121 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-04 21:47:36] 2026-03-04 20:46:33,121 | INFO     | collected zombie processes
[2026-03-04 21:47:36] 2026-03-04 20:46:33,121 | INFO     | will attempt to kill all subprocesses of pid=425857
[2026-03-04 21:47:36] 2026-03-04 20:46:33,161 | INFO     | process IDs to be killed: [425857] (in reverse order)
[2026-03-04 21:47:36] 2026-03-04 20:46:33,187 | WARNING  | found no corresponding commands to process id(s)
[2026-03-04 21:47:36] 2026-03-04 20:46:33,187 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-04 21:47:36] 2026-03-04 20:46:33,188 | INFO     | did not find any defunct processes belonging to 425857
[2026-03-04 21:47:36] 2026-03-04 20:46:33,189 | INFO     | did not find any defunct processes belonging to 425857
[2026-03-04 21:47:36] 2026-03-04 20:46:33,190 | INFO     | ready for new job
[2026-03-04 21:47:36] 2026-03-04 20:46:33,190 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-04 21:47:36] 2026-03-04 20:46:33,190 | INFO     | **************************************
[2026-03-04 21:47:36] 2026-03-04 20:46:33,190 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-04 21:47:36] 2026-03-04 20:46:33,190 | INFO     | **************************************
[2026-03-04 21:47:36] 2026-03-04 20:46:33,190 | INFO     | 
[2026-03-04 21:47:36] 2026-03-04 20:46:33,191 | INFO     | architecture information:
[2026-03-04 21:47:36] 2026-03-04 20:46:33,191 | INFO     | executing command: cat /etc/os-release
[2026-03-04 21:47:36] 2026-03-04 20:46:33,200 | INFO     | cat /etc/os-release:
[2026-03-04 21:47:36] NAME="CentOS Linux"
[2026-03-04 21:47:36] VERSION="7 (Core)"
[2026-03-04 21:47:36] ID="centos"
[2026-03-04 21:47:36] ID_LIKE="rhel fedora"
[2026-03-04 21:47:36] VERSION_ID="7"
[2026-03-04 21:47:36] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-04 21:47:36] ANSI_COLOR="0;31"
[2026-03-04 21:47:36] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-04 21:47:36] HOME_URL="https://www.centos.org/"
[2026-03-04 21:47:36] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-04 21:47:36] 
[2026-03-04 21:47:36] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-04 21:47:36] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-04 21:47:36] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-04 21:47:36] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-04 21:47:36] 
[2026-03-04 21:47:36] 2026-03-04 20:46:33,200 | INFO     | **************************************
[2026-03-04 21:47:36] 2026-03-04 20:46:33,703 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-04 21:47:36] 2026-03-04 20:46:33,717 | INFO     | sufficient remaining disk space (376006770688 B)
[2026-03-04 21:47:36] 2026-03-04 20:46:33,717 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-04 21:47:36] 2026-03-04 20:46:33,717 | INFO     | current server update state: UPDATING_FINAL
[2026-03-04 21:47:36] 2026-03-04 20:46:33,717 | INFO     | update_server=False
[2026-03-04 21:47:36] 2026-03-04 20:46:33,717 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-04 21:47:36] 2026-03-04 20:46:33,717 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-04 21:47:36] 2026-03-04 20:46:33,717 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-04 21:47:36] 2026-03-04 20:46:33,718 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-04 21:47:36] 2026-03-04 20:46:34,101 | INFO     | all payload control threads have been joined
[2026-03-04 21:47:36] 2026-03-04 20:46:34,404 | INFO     | all job control threads have been joined
[2026-03-04 21:47:36] 2026-03-04 20:46:34,636 | INFO     | all data control threads have been joined
[2026-03-04 21:47:36] 2026-03-04 20:46:34,723 | INFO     | [job] retrieve thread has finished
[2026-03-04 21:47:36] 2026-03-04 20:46:34,723 | INFO     | [job] queue monitor thread has finished
[2026-03-04 21:47:36] 2026-03-04 20:46:34,776 | INFO     | [payload] validate_post thread has finished
[2026-03-04 21:47:36] 2026-03-04 20:46:34,850 | WARNING  | process 425857 can no longer be monitored (due to stat problems) - aborting
[2026-03-04 21:47:36] 2026-03-04 20:46:34,878 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-04 21:47:36] 2026-03-04 20:46:34,913 | INFO     | number of running child processes to parent process 425857: 1
[2026-03-04 21:47:36] 2026-03-04 20:46:34,913 | INFO     | maximum number of monitored processes: 6
[2026-03-04 21:47:36] 2026-03-04 20:46:34,913 | INFO     | aborting job monitoring since job object (job id=7032464535) has expired
[2026-03-04 21:47:36] 2026-03-04 20:46:34,913 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-04 21:47:36] 2026-03-04 20:46:34,913 | INFO     | will abort loop
[2026-03-04 21:47:36] 2026-03-04 20:46:35,107 | INFO     | [payload] control thread has finished
[2026-03-04 21:47:36] 2026-03-04 20:46:35,232 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-04 21:47:36] 2026-03-04 20:46:35,293 | INFO     | [job] validate thread has finished
[2026-03-04 21:47:36] 2026-03-04 20:46:35,408 | INFO     | [payload] execute_payloads thread has finished
[2026-03-04 21:47:36] 2026-03-04 20:46:35,410 | INFO     | [job] control thread has finished
[2026-03-04 21:47:36] 2026-03-04 20:46:35,418 | INFO     | [job] create_data_payload thread has finished
[2026-03-04 21:47:36] 2026-03-04 20:46:35,449 | INFO     | [payload] validate_pre thread has finished
[2026-03-04 21:47:36] 2026-03-04 20:46:35,642 | INFO     | [data] control thread has finished
[2026-03-04 21:47:36] 2026-03-04 20:46:35,645 | INFO     | [data] copytool_in thread has finished
[2026-03-04 21:47:36] 2026-03-04 20:46:35,723 | INFO     | [data] copytool_out thread has finished
[2026-03-04 21:47:36] 2026-03-04 20:46:35,880 | INFO     | [payload] failed_post thread has finished
[2026-03-04 21:47:36] 2026-03-04 20:46:35,919 | INFO     | [job] job monitor thread has finished
[2026-03-04 21:47:36] 2026-03-04 20:46:37,724 | INFO     | [data] queue_monitor thread has finished
[2026-03-04 21:47:36] 2026-03-04 20:47:03,643 | INFO     | PID=421434 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-04 21:47:36] 2026-03-04 20:47:03,643 | INFO     | found 0 job(s) in 20 queues
[2026-03-04 21:47:36] 2026-03-04 20:47:03,643 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-04 21:47:36] 2026-03-04 20:47:03,643 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-04 21:47:36] 2026-03-04 20:47:30,979 | INFO     | [monitor] cgroup control has ended
[2026-03-04 21:47:36] 2026-03-04 20:47:31,141 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139779988461376)>', '<ExcThread(monitor, started 139779358316288)>']
[2026-03-04 21:47:36] 2026-03-04 20:47:31,783 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-04 21:47:36] 2026-03-04 20:47:31,783 | INFO     | [monitor] control thread has ended
[2026-03-04 21:47:36] 2026-03-04 20:47:36,162 | INFO     | all workflow threads have been joined
[2026-03-04 21:47:36] 2026-03-04 20:47:36,162 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-04 21:47:36] 2026-03-04 20:47:36,162 | INFO     | traces error code: 0
[2026-03-04 21:47:36] 2026-03-04 20:47:36,162 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-04 21:47:36] 2026-03-04 20:47:36,213 [wrapper] ==== pilot stdout END ====
[2026-03-04 21:47:36] 2026-03-04 20:47:36,216 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-04 21:47:36] 2026-03-04 20:47:36,218 [wrapper] pilotpid: 421434
[2026-03-04 21:47:36] 2026-03-04 20:47:36,221 [wrapper] Pilot exit status: 0
[2026-03-04 21:47:36] 2026-03-04 20:47:36,229 [wrapper] pandaids: 7032464535
[2026-03-04 21:47:36] 2026-03-04 20:47:36,246 [wrapper] cleanup supervisor_pilot  432746 421435
[2026-03-04 21:47:36] 2026-03-04 20:47:36,249 [wrapper] Test setup, not cleaning
[2026-03-04 21:47:36] 2026-03-04 20:47:36,251 [wrapper] apfmon messages muted
[2026-03-04 21:47:36] 2026-03-04 20:47:36,254 [wrapper] ==== wrapper stdout END ====
[2026-03-04 21:47:36] 2026-03-04 20:47:36,256 [wrapper] ==== wrapper stderr END ====
[2026-03-04 21:47:36]  *** Error codes and diagnostics ***
[2026-03-04 21:47:36]     "exeErrorCode": 0,
[2026-03-04 21:47:36]     "exeErrorDiag": "",
[2026-03-04 21:47:36]     "pilotErrorCode": 0,
[2026-03-04 21:47:36]     "pilotErrorDiag": "",
[2026-03-04 21:47:36]  *** Listing of results directory ***
[2026-03-04 21:47:36] total 458752
[2026-03-04 21:47:36] -rw-r--r-- 1 boinc boinc    584627 Feb 28 01:57 pilot3.tar.gz
[2026-03-04 21:47:36] -rwx------ 1 boinc boinc     36322 Feb 28 01:58 runpilot2-wrapper.sh
[2026-03-04 21:47:36] -rw-r--r-- 1 boinc boinc      5111 Feb 28 01:59 queuedata.json
[2026-03-04 21:47:36] -rw-r--r-- 1 boinc boinc       100 Mar  4 19:09 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-04 21:47:36] -rwxr-xr-x 1 boinc boinc      7986 Mar  4 19:09 run_atlas
[2026-03-04 21:47:36] -rw-r--r-- 1 boinc boinc       105 Mar  4 19:09 job.xml
[2026-03-04 21:47:36] -rw-r--r-- 2 boinc boinc 246970509 Mar  4 19:09 EVNT.48450782._000002.pool.root.1
[2026-03-04 21:47:36] -rw-r--r-- 2 boinc boinc    597999 Mar  4 19:09 input.tar.gz
[2026-03-04 21:47:36] -rw-r--r-- 2 boinc boinc     15845 Mar  4 19:09 start_atlas.sh
[2026-03-04 21:47:36] drwxrwx--x 2 boinc boinc      4096 Mar  4 19:09 shared
[2026-03-04 21:47:36] -rw-r--r-- 1 boinc boinc         0 Mar  4 19:09 boinc_setup_complete
[2026-03-04 21:47:36] -rw-r--r-- 1 boinc boinc      6446 Mar  4 19:09 init_data.xml
[2026-03-04 21:47:36] -rw-r--r-- 1 boinc boinc         0 Mar  4 19:09 boinc_lockfile
[2026-03-04 21:47:36] -rw-r--r-- 1 boinc boinc      2676 Mar  4 19:09 pandaJob.out
[2026-03-04 21:47:36] -rw------- 1 boinc boinc    997757 Mar  4 19:09 agis_schedconf.cvmfs.json
[2026-03-04 21:47:36] -rw------- 1 boinc boinc   1521291 Mar  4 19:09 agis_ddmendpoints.agis.ALL.json
[2026-03-04 21:47:36] -rw------- 1 boinc boinc       422 Mar  4 19:09 workernode_map.json
[2026-03-04 21:47:36] drwx------ 5 boinc boinc      4096 Mar  4 19:09 pilot3
[2026-03-04 21:47:36] -rw-r--r-- 1 boinc boinc       529 Mar  4 21:46 boinc_task_state.xml
[2026-03-04 21:47:36] -rw------- 1 boinc boinc        95 Mar  4 21:46 pilot_heartbeat.json
[2026-03-04 21:47:36] -rw------- 1 boinc boinc 215567984 Mar  4 21:46 HITS.48843355._000034.pool.root.1
[2026-03-04 21:47:36] -rw------- 1 boinc boinc      1026 Mar  4 21:46 memory_monitor_summary.json
[2026-03-04 21:47:36] -rw------- 1 boinc boinc    313731 Mar  4 21:46 log.48843355._000034.job.log.tgz.1
[2026-03-04 21:47:36] -rw------- 1 boinc boinc      6280 Mar  4 21:46 heartbeat.json
[2026-03-04 21:47:36] -rw-r--r-- 1 boinc boinc        27 Mar  4 21:47 wrapper_checkpoint.txt
[2026-03-04 21:47:36] -rw-r--r-- 1 boinc boinc      8192 Mar  4 21:47 boinc_mmap_file
[2026-03-04 21:47:36] -rw------- 1 boinc boinc      5269 Mar  4 21:47 pilotlog.txt
[2026-03-04 21:47:36] -rw------- 1 boinc boinc   1342486 Mar  4 21:47 log.48843355._000034.job.log.1
[2026-03-04 21:47:36] -rw------- 1 boinc boinc       357 Mar  4 21:47 output.list
[2026-03-04 21:47:36] -rw-r--r-- 1 boinc boinc       620 Mar  4 21:47 runtime_log
[2026-03-04 21:47:36] -rw------- 1 boinc boinc   1669120 Mar  4 21:47 result.tar.gz
[2026-03-04 21:47:36] -rw-r--r-- 1 boinc boinc      8896 Mar  4 21:47 runtime_log.err
[2026-03-04 21:47:36] -rw------- 1 boinc boinc       657 Mar  4 21:47 SgOODmiqNG9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmCA6KDmSmXb7n.diag
[2026-03-04 21:47:36] -rw-r--r-- 1 boinc boinc     12235 Mar  4 21:47 stderr.txt
[2026-03-04 21:47:36] HITS file was successfully produced:
[2026-03-04 21:47:36] -rw------- 1 boinc boinc 215567984 Mar  4 21:46 shared/HITS.pool.root.1
[2026-03-04 21:47:36]  *** Contents of shared directory: ***
[2026-03-04 21:47:36] total 453932
[2026-03-04 21:47:36] -rw-r--r-- 2 boinc boinc 246970509 Mar  4 19:09 ATLAS.root_0
[2026-03-04 21:47:36] -rw-r--r-- 2 boinc boinc    597999 Mar  4 19:09 input.tar.gz
[2026-03-04 21:47:36] -rw-r--r-- 2 boinc boinc     15845 Mar  4 19:09 start_atlas.sh
[2026-03-04 21:47:36] -rw------- 1 boinc boinc 215567984 Mar  4 21:46 HITS.pool.root.1
[2026-03-04 21:47:36] -rw------- 1 boinc boinc   1669120 Mar  4 21:47 result.tar.gz
21:47:37 (417393): run_atlas exited; CPU time 27540.121508
21:47:37 (417393): called boinc_finish(0)

</stderr_txt>
]]>

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