Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
18:30:43 (1425314): wrapper (7.7.26015): starting
18:30:43 (1425314): wrapper: running run_atlas (--nthreads 3)
[2026-03-04 18:30:43] Arguments: --nthreads 3
[2026-03-04 18:30:43] Threads: 3
[2026-03-04 18:30:43] Checking for CVMFS
[2026-03-04 18:30:43] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-04 18:30:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-04 18:30:44] Running cvmfs_config stat atlas.cern.ch
[2026-03-04 18:30:44] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-04 18:30:44] 2.9.2.0 36558 10224 84576 156880 0 188 27821807 36864000 0 130560 0 3908732 99.981 375228 15912 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-04 18:30:44] CVMFS is ok
[2026-03-04 18:30:44] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-04 18:30:44] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-04 18:30:44] Further information can be found at the LHC@home message board.
[2026-03-04 18:30:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-04 18:30:44] Checking for apptainer binary...
[2026-03-04 18:30:44] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-04 18:30:44] Running /usr/bin/apptainer --version
[2026-03-04 18:30:44] apptainer version 1.4.1-1.1
[2026-03-04 18:30:44] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-04 18:30:44] magicA252
[2026-03-04 18:30:44] apptainer works
[2026-03-04 18:30:44] Set ATHENA_PROC_NUMBER=3
[2026-03-04 18:30:44] Set ATHENA_CORE_NUMBER=3
[2026-03-04 18:30:44] Starting ATLAS job with PandaID=7037097973
[2026-03-04 18:30:44] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-04 20:54:28]  *** The last 200 lines of the pilot log: ***
[2026-03-04 20:54:28] 2026-03-04 19:53:57,262 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-04 20:54:28] 2026-03-04 19:53:57,262 | INFO     | collected zombie processes
[2026-03-04 20:54:28] 2026-03-04 19:53:57,262 | INFO     | will attempt to kill all subprocesses of pid=1433789
[2026-03-04 20:54:28] 2026-03-04 19:53:57,302 | INFO     | process IDs to be killed: [1433789] (in reverse order)
[2026-03-04 20:54:28] 2026-03-04 19:53:57,327 | WARNING  | found no corresponding commands to process id(s)
[2026-03-04 20:54:28] 2026-03-04 19:53:57,328 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-04 20:54:28] 2026-03-04 19:53:57,329 | INFO     | did not find any defunct processes belonging to 1433789
[2026-03-04 20:54:28] 2026-03-04 19:53:57,330 | INFO     | did not find any defunct processes belonging to 1433789
[2026-03-04 20:54:28] 2026-03-04 19:53:57,330 | INFO     | ready for new job
[2026-03-04 20:54:28] 2026-03-04 19:53:57,330 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-04 20:54:28] 2026-03-04 19:53:57,331 | INFO     | **************************************
[2026-03-04 20:54:28] 2026-03-04 19:53:57,331 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-04 20:54:28] 2026-03-04 19:53:57,331 | INFO     | **************************************
[2026-03-04 20:54:28] 2026-03-04 19:53:57,331 | INFO     | 
[2026-03-04 20:54:28] 2026-03-04 19:53:57,331 | INFO     | architecture information:
[2026-03-04 20:54:28] 2026-03-04 19:53:57,332 | INFO     | executing command: cat /etc/os-release
[2026-03-04 20:54:28] 2026-03-04 19:53:57,341 | INFO     | cat /etc/os-release:
[2026-03-04 20:54:28] NAME="CentOS Linux"
[2026-03-04 20:54:28] VERSION="7 (Core)"
[2026-03-04 20:54:28] ID="centos"
[2026-03-04 20:54:28] ID_LIKE="rhel fedora"
[2026-03-04 20:54:28] VERSION_ID="7"
[2026-03-04 20:54:28] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-04 20:54:28] ANSI_COLOR="0;31"
[2026-03-04 20:54:28] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-04 20:54:28] HOME_URL="https://www.centos.org/"
[2026-03-04 20:54:28] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-04 20:54:28] 
[2026-03-04 20:54:28] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-04 20:54:28] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-04 20:54:28] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-04 20:54:28] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-04 20:54:28] 
[2026-03-04 20:54:28] 2026-03-04 19:53:57,341 | INFO     | **************************************
[2026-03-04 20:54:28] 2026-03-04 19:53:57,845 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-04 20:54:28] 2026-03-04 19:53:57,857 | INFO     | sufficient remaining disk space (376531058688 B)
[2026-03-04 20:54:28] 2026-03-04 19:53:57,857 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-04 20:54:28] 2026-03-04 19:53:57,857 | INFO     | current server update state: UPDATING_FINAL
[2026-03-04 20:54:28] 2026-03-04 19:53:57,857 | INFO     | update_server=False
[2026-03-04 20:54:28] 2026-03-04 19:53:57,857 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-04 20:54:28] 2026-03-04 19:53:57,858 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-04 20:54:28] 2026-03-04 19:53:57,858 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-04 20:54:28] 2026-03-04 19:53:57,858 | INFO     | aborting loop
[2026-03-04 20:54:28] 2026-03-04 19:53:57,961 | INFO     | all data control threads have been joined
[2026-03-04 20:54:28] 2026-03-04 19:53:58,102 | INFO     | all job control threads have been joined
[2026-03-04 20:54:28] 2026-03-04 19:53:58,671 | INFO     | all payload control threads have been joined
[2026-03-04 20:54:28] 2026-03-04 19:53:58,863 | INFO     | [job] queue monitor thread has finished
[2026-03-04 20:54:28] 2026-03-04 19:53:58,863 | INFO     | [job] retrieve thread has finished
[2026-03-04 20:54:28] 2026-03-04 19:53:58,864 | INFO     | [job] job monitor thread has finished
[2026-03-04 20:54:28] 2026-03-04 19:53:58,949 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-04 20:54:28] 2026-03-04 19:53:58,954 | INFO     | [payload] validate_post thread has finished
[2026-03-04 20:54:28] 2026-03-04 19:53:58,967 | INFO     | [data] control thread has finished
[2026-03-04 20:54:28] 2026-03-04 19:53:59,033 | INFO     | [data] copytool_in thread has finished
[2026-03-04 20:54:28] 2026-03-04 19:53:59,108 | INFO     | [job] control thread has finished
[2026-03-04 20:54:28] 2026-03-04 19:53:59,677 | INFO     | [payload] control thread has finished
[2026-03-04 20:54:28] 2026-03-04 19:53:59,955 | INFO     | [payload] execute_payloads thread has finished
[2026-03-04 20:54:28] 2026-03-04 19:54:00,014 | INFO     | [payload] failed_post thread has finished
[2026-03-04 20:54:28] 2026-03-04 19:54:00,255 | INFO     | [job] validate thread has finished
[2026-03-04 20:54:28] 2026-03-04 19:54:00,335 | INFO     | [job] create_data_payload thread has finished
[2026-03-04 20:54:28] 2026-03-04 19:54:00,351 | INFO     | [payload] validate_pre thread has finished
[2026-03-04 20:54:28] 2026-03-04 19:54:00,896 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-04 20:54:28] 2026-03-04 19:54:00,953 | INFO     | [data] copytool_out thread has finished
[2026-03-04 20:54:28] 2026-03-04 19:54:03,383 | INFO     | [monitor] cgroup control has ended
[2026-03-04 20:54:28] 2026-03-04 19:54:04,899 | INFO     | [data] queue_monitor thread has finished
[2026-03-04 20:54:28] 2026-03-04 19:54:08,077 | INFO     | job.realtimelogging is not enabled
[2026-03-04 20:54:28] 2026-03-04 19:54:09,078 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-04 20:54:28] 2026-03-04 19:54:09,424 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140178664171328)>', '<ExcThread(monitor, started 140178152724224)>']
[2026-03-04 20:54:28] 2026-03-04 19:54:14,431 | INFO     | all workflow threads have been joined
[2026-03-04 20:54:28] 2026-03-04 19:54:14,431 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-04 20:54:28] 2026-03-04 19:54:14,431 | INFO     | traces error code: 0
[2026-03-04 20:54:28] 2026-03-04 19:54:14,431 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-04 20:54:28] 2026-03-04 19:54:28,075 | INFO     | PID=1429362 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-04 20:54:28] 2026-03-04 19:54:28,075 | INFO     | found 0 job(s) in 20 queues
[2026-03-04 20:54:28] 2026-03-04 19:54:28,076 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-04 20:54:28] 2026-03-04 19:54:28,076 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-04 20:54:28] 2026-03-04 19:54:28,076 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-04 20:54:28] 2026-03-04 19:54:28,076 | INFO     | [monitor] control thread has ended
[2026-03-04 20:54:28] 2026-03-04 19:54:28,122 [wrapper] ==== pilot stdout END ====
[2026-03-04 20:54:28] 2026-03-04 19:54:28,124 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-04 20:54:28] 2026-03-04 19:54:28,127 [wrapper] pilotpid: 1429362
[2026-03-04 20:54:28] 2026-03-04 19:54:28,129 [wrapper] Pilot exit status: 0
[2026-03-04 20:54:28] 2026-03-04 19:54:28,137 [wrapper] pandaids: 7037097973
[2026-03-04 20:54:28] 2026-03-04 19:54:28,154 [wrapper] cleanup supervisor_pilot 1439825 1429363
[2026-03-04 20:54:28] 2026-03-04 19:54:28,156 [wrapper] Test setup, not cleaning
[2026-03-04 20:54:28] 2026-03-04 19:54:28,159 [wrapper] apfmon messages muted
[2026-03-04 20:54:28] 2026-03-04 19:54:28,161 [wrapper] ==== wrapper stdout END ====
[2026-03-04 20:54:28] 2026-03-04 19:54:28,164 [wrapper] ==== wrapper stderr END ====
[2026-03-04 20:54:28]  *** Error codes and diagnostics ***
[2026-03-04 20:54:28]     "exeErrorCode": 0,
[2026-03-04 20:54:28]     "exeErrorDiag": "",
[2026-03-04 20:54:28]     "pilotErrorCode": 0,
[2026-03-04 20:54:28]     "pilotErrorDiag": "",
[2026-03-04 20:54:28]  *** Listing of results directory ***
[2026-03-04 20:54:28] total 415316
[2026-03-04 20:54:28] -rw-r--r-- 1 boinc boinc      5111 Mar  4 03:44 queuedata.json
[2026-03-04 20:54:28] -rwx------ 1 boinc boinc     36322 Mar  4 03:44 runpilot2-wrapper.sh
[2026-03-04 20:54:28] -rw-r--r-- 1 boinc boinc    584627 Mar  4 03:44 pilot3.tar.gz
[2026-03-04 20:54:28] -rw-r--r-- 1 boinc boinc       100 Mar  4 18:30 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-04 20:54:28] -rwxr-xr-x 1 boinc boinc      7986 Mar  4 18:30 run_atlas
[2026-03-04 20:54:28] -rw-r--r-- 1 boinc boinc       105 Mar  4 18:30 job.xml
[2026-03-04 20:54:28] -rw-r--r-- 2 boinc boinc 222702752 Mar  4 18:30 EVNT.48454222._000002.pool.root.1
[2026-03-04 20:54:28] -rw-r--r-- 2 boinc boinc    597979 Mar  4 18:30 input.tar.gz
[2026-03-04 20:54:28] -rw-r--r-- 2 boinc boinc     15845 Mar  4 18:30 start_atlas.sh
[2026-03-04 20:54:28] drwxrwx--x 2 boinc boinc      4096 Mar  4 18:30 shared
[2026-03-04 20:54:28] -rw-r--r-- 1 boinc boinc         0 Mar  4 18:30 boinc_setup_complete
[2026-03-04 20:54:28] -rw-r--r-- 1 boinc boinc      6449 Mar  4 18:30 init_data.xml
[2026-03-04 20:54:28] -rw-r--r-- 1 boinc boinc         0 Mar  4 18:30 boinc_lockfile
[2026-03-04 20:54:28] -rw-r--r-- 1 boinc boinc      2631 Mar  4 18:30 pandaJob.out
[2026-03-04 20:54:28] -rw------- 1 boinc boinc    997352 Mar  4 18:30 agis_schedconf.cvmfs.json
[2026-03-04 20:54:28] -rw------- 1 boinc boinc   1521291 Mar  4 18:30 agis_ddmendpoints.agis.ALL.json
[2026-03-04 20:54:28] -rw------- 1 boinc boinc       426 Mar  4 18:30 workernode_map.json
[2026-03-04 20:54:28] drwx------ 5 boinc boinc      4096 Mar  4 18:30 pilot3
[2026-03-04 20:54:28] -rw------- 1 boinc boinc        95 Mar  4 20:53 pilot_heartbeat.json
[2026-03-04 20:54:28] -rw------- 1 boinc boinc 195586999 Mar  4 20:53 HITS.48844787._000079.pool.root.1
[2026-03-04 20:54:28] -rw-r--r-- 1 boinc boinc       529 Mar  4 20:53 boinc_task_state.xml
[2026-03-04 20:54:28] -rw------- 1 boinc boinc      1021 Mar  4 20:53 memory_monitor_summary.json
[2026-03-04 20:54:28] -rw------- 1 boinc boinc    308669 Mar  4 20:53 log.48844787._000079.job.log.tgz.1
[2026-03-04 20:54:28] -rw------- 1 boinc boinc      6295 Mar  4 20:53 heartbeat.json
[2026-03-04 20:54:28] -rw-r--r-- 1 boinc boinc      8192 Mar  4 20:54 boinc_mmap_file
[2026-03-04 20:54:28] -rw-r--r-- 1 boinc boinc        27 Mar  4 20:54 wrapper_checkpoint.txt
[2026-03-04 20:54:28] -rw------- 1 boinc boinc       747 Mar  4 20:54 pilotlog.txt
[2026-03-04 20:54:28] -rw------- 1 boinc boinc   1228828 Mar  4 20:54 log.48844787._000079.job.log.1
[2026-03-04 20:54:28] -rw------- 1 boinc boinc       357 Mar  4 20:54 output.list
[2026-03-04 20:54:28] -rw-r--r-- 1 boinc boinc       620 Mar  4 20:54 runtime_log
[2026-03-04 20:54:28] -rw------- 1 boinc boinc   1556480 Mar  4 20:54 result.tar.gz
[2026-03-04 20:54:28] -rw-r--r-- 1 boinc boinc      8911 Mar  4 20:54 runtime_log.err
[2026-03-04 20:54:28] -rw------- 1 boinc boinc       660 Mar  4 20:54 TWzNDmhOrH9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmj4ILDmA8kS6n.diag
[2026-03-04 20:54:28] -rw-r--r-- 1 boinc boinc     10509 Mar  4 20:54 stderr.txt
[2026-03-04 20:54:28] HITS file was successfully produced:
[2026-03-04 20:54:28] -rw------- 1 boinc boinc 195586999 Mar  4 20:53 shared/HITS.pool.root.1
[2026-03-04 20:54:28]  *** Contents of shared directory: ***
[2026-03-04 20:54:28] total 410612
[2026-03-04 20:54:28] -rw-r--r-- 2 boinc boinc 222702752 Mar  4 18:30 ATLAS.root_0
[2026-03-04 20:54:28] -rw-r--r-- 2 boinc boinc    597979 Mar  4 18:30 input.tar.gz
[2026-03-04 20:54:28] -rw-r--r-- 2 boinc boinc     15845 Mar  4 18:30 start_atlas.sh
[2026-03-04 20:54:28] -rw------- 1 boinc boinc 195586999 Mar  4 20:53 HITS.pool.root.1
[2026-03-04 20:54:28] -rw------- 1 boinc boinc   1556480 Mar  4 20:54 result.tar.gz
20:54:29 (1425314): run_atlas exited; CPU time 25005.248475
20:54:29 (1425314): called boinc_finish(0)

</stderr_txt>
]]>

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