Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
12:29:21 (1631626): wrapper (7.7.26015): starting
12:29:21 (1631626): wrapper: running run_atlas (--nthreads 4)
[2026-03-04 12:29:21] Arguments: --nthreads 4
[2026-03-04 12:29:21] Threads: 4
[2026-03-04 12:29:21] Checking for CVMFS
[2026-03-04 12:29:21] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-04 12:29:21] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-04 12:29:21] Running cvmfs_config stat atlas.cern.ch
[2026-03-04 12:29:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-04 12:29:22] 2.9.2.0 56696 9853 102116 156880 0 50 25762666 36864000 0 130560 0 4367014 99.983 373676 15248 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-04 12:29:22] CVMFS is ok
[2026-03-04 12:29:22] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-04 12:29:22] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-04 12:29:22] Further information can be found at the LHC@home message board.
[2026-03-04 12:29:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-04 12:29:22] Checking for apptainer binary...
[2026-03-04 12:29:22] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-04 12:29:22] Running /usr/bin/apptainer --version
[2026-03-04 12:29:22] apptainer version 1.4.1-1.1
[2026-03-04 12:29:22] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-04 12:29:22] thA381
[2026-03-04 12:29:22] apptainer works
[2026-03-04 12:29:22] Set ATHENA_PROC_NUMBER=4
[2026-03-04 12:29:22] Set ATHENA_CORE_NUMBER=4
[2026-03-04 12:29:22] Starting ATLAS job with PandaID=7036778646
[2026-03-04 12:29:22] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-04 13:54:46]  *** The last 200 lines of the pilot log: ***
[2026-03-04 13:54:46] 2026-03-04 12:54:28,053 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-04 13:54:46] 2026-03-04 12:54:28,053 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-04 13:54:46] 2026-03-04 12:54:28,053 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-04 13:54:46] 2026-03-04 12:54:28,053 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-04 13:54:46] 2026-03-04 12:54:28,054 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-04 13:54:46] 2026-03-04 12:54:28,054 | INFO     | job 7036778646 has completed (purged errors)
[2026-03-04 13:54:46] 2026-03-04 12:54:28,054 | INFO     | overall cleanup function is called
[2026-03-04 13:54:46] 2026-03-04 12:54:29,061 | INFO     | --- collectZombieJob: --- 10, [1640252]
[2026-03-04 13:54:46] 2026-03-04 12:54:29,061 | INFO     | zombie collector waiting for pid 1640252
[2026-03-04 13:54:46] 2026-03-04 12:54:29,061 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-04 13:54:46] 2026-03-04 12:54:29,061 | INFO     | collected zombie processes
[2026-03-04 13:54:46] 2026-03-04 12:54:29,061 | INFO     | will attempt to kill all subprocesses of pid=1640252
[2026-03-04 13:54:46] 2026-03-04 12:54:29,103 | INFO     | process IDs to be killed: [1640252] (in reverse order)
[2026-03-04 13:54:46] 2026-03-04 12:54:29,136 | WARNING  | found no corresponding commands to process id(s)
[2026-03-04 13:54:46] 2026-03-04 12:54:29,137 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-04 13:54:46] 2026-03-04 12:54:29,138 | INFO     | did not find any defunct processes belonging to 1640252
[2026-03-04 13:54:46] 2026-03-04 12:54:29,140 | INFO     | did not find any defunct processes belonging to 1640252
[2026-03-04 13:54:46] 2026-03-04 12:54:29,140 | INFO     | ready for new job
[2026-03-04 13:54:46] 2026-03-04 12:54:29,140 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-04 13:54:46] 2026-03-04 12:54:29,140 | INFO     | **************************************
[2026-03-04 13:54:46] 2026-03-04 12:54:29,140 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-04 13:54:46] 2026-03-04 12:54:29,140 | INFO     | **************************************
[2026-03-04 13:54:46] 2026-03-04 12:54:29,141 | INFO     | 
[2026-03-04 13:54:46] 2026-03-04 12:54:29,141 | INFO     | architecture information:
[2026-03-04 13:54:46] 2026-03-04 12:54:29,141 | INFO     | executing command: cat /etc/os-release
[2026-03-04 13:54:46] 2026-03-04 12:54:29,156 | INFO     | cat /etc/os-release:
[2026-03-04 13:54:46] NAME="CentOS Linux"
[2026-03-04 13:54:46] VERSION="7 (Core)"
[2026-03-04 13:54:46] ID="centos"
[2026-03-04 13:54:46] ID_LIKE="rhel fedora"
[2026-03-04 13:54:46] VERSION_ID="7"
[2026-03-04 13:54:46] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-04 13:54:46] ANSI_COLOR="0;31"
[2026-03-04 13:54:46] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-04 13:54:46] HOME_URL="https://www.centos.org/"
[2026-03-04 13:54:46] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-04 13:54:46] 
[2026-03-04 13:54:46] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-04 13:54:46] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-04 13:54:46] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-04 13:54:46] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-04 13:54:46] 
[2026-03-04 13:54:46] 2026-03-04 12:54:29,156 | INFO     | **************************************
[2026-03-04 13:54:46] 2026-03-04 12:54:29,659 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-04 13:54:46] 2026-03-04 12:54:29,678 | INFO     | sufficient remaining disk space (232888729600 B)
[2026-03-04 13:54:46] 2026-03-04 12:54:29,678 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-04 13:54:46] 2026-03-04 12:54:29,678 | INFO     | current server update state: UPDATING_FINAL
[2026-03-04 13:54:46] 2026-03-04 12:54:29,678 | INFO     | update_server=False
[2026-03-04 13:54:46] 2026-03-04 12:54:29,678 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-04 13:54:46] 2026-03-04 12:54:29,678 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-04 13:54:46] 2026-03-04 12:54:29,678 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-03-04 13:54:46] 2026-03-04 12:54:29,678 | INFO     | found 0 job(s) in 20 queues
[2026-03-04 13:54:46] 2026-03-04 12:54:29,679 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-04 13:54:46] 2026-03-04 12:54:29,679 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-04 13:54:46] 2026-03-04 12:54:29,880 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-04 13:54:46] 2026-03-04 12:54:30,136 | INFO     | all data control threads have been joined
[2026-03-04 13:54:46] 2026-03-04 12:54:30,542 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-04 13:54:46] 2026-03-04 12:54:30,542 | INFO     | aborting loop
[2026-03-04 13:54:46] 2026-03-04 12:54:30,591 | INFO     | all job control threads have been joined
[2026-03-04 13:54:46] 2026-03-04 12:54:30,684 | INFO     | [job] retrieve thread has finished
[2026-03-04 13:54:46] 2026-03-04 12:54:30,684 | INFO     | [job] queue monitor thread has finished
[2026-03-04 13:54:46] 2026-03-04 12:54:30,890 | INFO     | [payload] validate_post thread has finished
[2026-03-04 13:54:46] 2026-03-04 12:54:30,982 | INFO     | all payload control threads have been joined
[2026-03-04 13:54:46] 2026-03-04 12:54:31,142 | INFO     | [data] control thread has finished
[2026-03-04 13:54:46] 2026-03-04 12:54:31,280 | INFO     | [payload] execute_payloads thread has finished
[2026-03-04 13:54:46] 2026-03-04 12:54:31,308 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-04 13:54:46] 2026-03-04 12:54:31,517 | INFO     | [job] validate thread has finished
[2026-03-04 13:54:46] 2026-03-04 12:54:31,548 | INFO     | [job] job monitor thread has finished
[2026-03-04 13:54:46] 2026-03-04 12:54:31,593 | INFO     | [job] control thread has finished
[2026-03-04 13:54:46] 2026-03-04 12:54:31,615 | INFO     | [job] create_data_payload thread has finished
[2026-03-04 13:54:46] 2026-03-04 12:54:31,689 | INFO     | [payload] validate_pre thread has finished
[2026-03-04 13:54:46] 2026-03-04 12:54:31,810 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-04 13:54:46] 2026-03-04 12:54:31,843 | INFO     | [data] copytool_in thread has finished
[2026-03-04 13:54:46] 2026-03-04 12:54:31,886 | INFO     | [data] copytool_out thread has finished
[2026-03-04 13:54:46] 2026-03-04 12:54:31,917 | INFO     | [payload] failed_post thread has finished
[2026-03-04 13:54:46] 2026-03-04 12:54:31,988 | INFO     | [payload] control thread has finished
[2026-03-04 13:54:46] 2026-03-04 12:54:35,315 | INFO     | [data] queue_monitor thread has finished
[2026-03-04 13:54:46] 2026-03-04 12:54:40,682 | INFO     | [monitor] cgroup control has ended
[2026-03-04 13:54:46] 2026-03-04 12:54:41,392 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139649623598912)>', '<ExcThread(monitor, started 139648235988736)>']
[2026-03-04 13:54:46] 2026-03-04 12:54:41,743 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-04 13:54:46] 2026-03-04 12:54:41,743 | INFO     | [monitor] control thread has ended
[2026-03-04 13:54:46] 2026-03-04 12:54:46,418 | INFO     | all workflow threads have been joined
[2026-03-04 13:54:46] 2026-03-04 12:54:46,418 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-04 13:54:46] 2026-03-04 12:54:46,419 | INFO     | traces error code: 0
[2026-03-04 13:54:46] 2026-03-04 12:54:46,419 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-04 13:54:46] 2026-03-04 12:54:46,495 [wrapper] ==== pilot stdout END ====
[2026-03-04 13:54:46] 2026-03-04 12:54:46,500 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-04 13:54:46] 2026-03-04 12:54:46,504 [wrapper] pilotpid: 1635733
[2026-03-04 13:54:46] 2026-03-04 12:54:46,509 [wrapper] Pilot exit status: 0
[2026-03-04 13:54:46] 2026-03-04 12:54:46,521 [wrapper] pandaids: 7036778646
[2026-03-04 13:54:46] 2026-03-04 12:54:46,544 [wrapper] cleanup supervisor_pilot 1645782 1635734
[2026-03-04 13:54:46] 2026-03-04 12:54:46,548 [wrapper] Test setup, not cleaning
[2026-03-04 13:54:46] 2026-03-04 12:54:46,552 [wrapper] apfmon messages muted
[2026-03-04 13:54:46] 2026-03-04 12:54:46,556 [wrapper] ==== wrapper stdout END ====
[2026-03-04 13:54:46] 2026-03-04 12:54:46,560 [wrapper] ==== wrapper stderr END ====
[2026-03-04 13:54:46]  *** Error codes and diagnostics ***
[2026-03-04 13:54:46]     "exeErrorCode": 0,
[2026-03-04 13:54:46]     "exeErrorDiag": "",
[2026-03-04 13:54:46]     "pilotErrorCode": 0,
[2026-03-04 13:54:46]     "pilotErrorDiag": "",
[2026-03-04 13:54:46]  *** Listing of results directory ***
[2026-03-04 13:54:46] total 515848
[2026-03-04 13:54:46] -rw-r--r-- 1 boinc boinc    584627 Mar  4 00:05 pilot3.tar.gz
[2026-03-04 13:54:46] -rw-r--r-- 1 boinc boinc      5111 Mar  4 00:06 queuedata.json
[2026-03-04 13:54:46] -rwx------ 1 boinc boinc     36322 Mar  4 00:06 runpilot2-wrapper.sh
[2026-03-04 13:54:46] -rw-r--r-- 1 boinc boinc       100 Mar  4 12:29 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-04 13:54:46] -rwxr-xr-x 1 boinc boinc      7986 Mar  4 12:29 run_atlas
[2026-03-04 13:54:46] -rw-r--r-- 1 boinc boinc       105 Mar  4 12:29 job.xml
[2026-03-04 13:54:46] -rw-r--r-- 2 boinc boinc 293112644 Mar  4 12:29 EVNT.48220197._000269.pool.root.1
[2026-03-04 13:54:46] drwxrwx--x 2 boinc boinc      4096 Mar  4 12:29 shared
[2026-03-04 13:54:46] -rw-r--r-- 2 boinc boinc    597963 Mar  4 12:29 input.tar.gz
[2026-03-04 13:54:46] -rw-r--r-- 2 boinc boinc     15845 Mar  4 12:29 start_atlas.sh
[2026-03-04 13:54:46] -rw-r--r-- 1 boinc boinc         0 Mar  4 12:29 boinc_setup_complete
[2026-03-04 13:54:46] -rw-r--r-- 1 boinc boinc      6377 Mar  4 12:29 init_data.xml
[2026-03-04 13:54:46] -rw-r--r-- 1 boinc boinc         0 Mar  4 12:29 boinc_lockfile
[2026-03-04 13:54:46] -rw-r--r-- 1 boinc boinc      2567 Mar  4 12:29 pandaJob.out
[2026-03-04 13:54:46] -rw------- 1 boinc boinc    997352 Mar  4 12:29 agis_schedconf.cvmfs.json
[2026-03-04 13:54:46] -rw------- 1 boinc boinc   1516092 Mar  4 12:29 agis_ddmendpoints.agis.ALL.json
[2026-03-04 13:54:46] -rw------- 1 boinc boinc       427 Mar  4 12:29 workernode_map.json
[2026-03-04 13:54:46] drwx------ 5 boinc boinc      4096 Mar  4 12:29 pilot3
[2026-03-04 13:54:46] -rw------- 1 boinc boinc        95 Mar  4 13:53 pilot_heartbeat.json
[2026-03-04 13:54:46] -rw------- 1 boinc boinc 229151340 Mar  4 13:53 HITS.48838577._006794.pool.root.1
[2026-03-04 13:54:46] -rw-r--r-- 1 boinc boinc       529 Mar  4 13:54 boinc_task_state.xml
[2026-03-04 13:54:46] -rw------- 1 boinc boinc      1018 Mar  4 13:54 memory_monitor_summary.json
[2026-03-04 13:54:46] -rw------- 1 boinc boinc    277826 Mar  4 13:54 log.48838577._006794.job.log.tgz.1
[2026-03-04 13:54:46] -rw------- 1 boinc boinc      6306 Mar  4 13:54 heartbeat.json
[2026-03-04 13:54:46] -rw-r--r-- 1 boinc boinc      8192 Mar  4 13:54 boinc_mmap_file
[2026-03-04 13:54:46] -rw-r--r-- 1 boinc boinc        27 Mar  4 13:54 wrapper_checkpoint.txt
[2026-03-04 13:54:46] -rw------- 1 boinc boinc      4552 Mar  4 13:54 pilotlog.txt
[2026-03-04 13:54:46] -rw------- 1 boinc boinc    744780 Mar  4 13:54 log.48838577._006794.job.log.1
[2026-03-04 13:54:46] -rw------- 1 boinc boinc       357 Mar  4 13:54 output.list
[2026-03-04 13:54:46] -rw-r--r-- 1 boinc boinc       620 Mar  4 13:54 runtime_log
[2026-03-04 13:54:46] -rw------- 1 boinc boinc   1044480 Mar  4 13:54 result.tar.gz
[2026-03-04 13:54:46] -rw-r--r-- 1 boinc boinc      8896 Mar  4 13:54 runtime_log.err
[2026-03-04 13:54:46] -rw------- 1 boinc boinc       657 Mar  4 13:54 Nj9NDmwznH9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmuCILDmts47mn.diag
[2026-03-04 13:54:46] -rw-r--r-- 1 boinc boinc     11234 Mar  4 13:54 stderr.txt
[2026-03-04 13:54:46] HITS file was successfully produced:
[2026-03-04 13:54:46] -rw------- 1 boinc boinc 229151340 Mar  4 13:53 shared/HITS.pool.root.1
[2026-03-04 13:54:46]  *** Contents of shared directory: ***
[2026-03-04 13:54:46] total 511652
[2026-03-04 13:54:46] -rw-r--r-- 2 boinc boinc 293112644 Mar  4 12:29 ATLAS.root_0
[2026-03-04 13:54:46] -rw-r--r-- 2 boinc boinc    597963 Mar  4 12:29 input.tar.gz
[2026-03-04 13:54:46] -rw-r--r-- 2 boinc boinc     15845 Mar  4 12:29 start_atlas.sh
[2026-03-04 13:54:46] -rw------- 1 boinc boinc 229151340 Mar  4 13:53 HITS.pool.root.1
[2026-03-04 13:54:46] -rw------- 1 boinc boinc   1044480 Mar  4 13:54 result.tar.gz
13:54:47 (1631626): run_atlas exited; CPU time 19179.901156
13:54:47 (1631626): called boinc_finish(0)

</stderr_txt>
]]>

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