Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
17:47:57 (807818): wrapper (7.7.26015): starting
17:47:57 (807818): wrapper: running run_atlas (--nthreads 3)
[2026-03-04 17:47:57] Arguments: --nthreads 3
[2026-03-04 17:47:57] Threads: 3
[2026-03-04 17:47:57] Checking for CVMFS
[2026-03-04 17:47:57] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-04 17:47:58] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-04 17:47:58] Running cvmfs_config stat atlas.cern.ch
[2026-03-04 17:47:58] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-04 17:47:58] 2.9.2.0 3705770 10191 85624 156880 2 189 35576228 36864000 0 130560 0 3556412 99.974 451632 4745 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-04 17:47:58] CVMFS is ok
[2026-03-04 17:47:58] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-04 17:47:58] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-04 17:47:58] Further information can be found at the LHC@home message board.
[2026-03-04 17:47:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-04 17:47:58] Checking for apptainer binary...
[2026-03-04 17:47:58] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-04 17:47:58] Running /usr/bin/apptainer --version
[2026-03-04 17:47:58] apptainer version 1.4.1-1.1
[2026-03-04 17:47:58] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-04 17:47:58] atlasA223
[2026-03-04 17:47:58] apptainer works
[2026-03-04 17:47:58] Set ATHENA_PROC_NUMBER=3
[2026-03-04 17:47:58] Set ATHENA_CORE_NUMBER=3
[2026-03-04 17:47:58] Starting ATLAS job with PandaID=7036754905
[2026-03-04 17:47:58] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-04 19:27:27]  *** The last 200 lines of the pilot log: ***
[2026-03-04 19:27:27] 2026-03-04 18:26:55,106 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-04 19:27:27] 2026-03-04 18:26:55,106 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-04 19:27:27] 2026-03-04 18:26:55,106 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-04 19:27:27] 2026-03-04 18:26:55,106 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-04 19:27:27] 2026-03-04 18:26:55,106 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-04 19:27:27] 2026-03-04 18:26:55,106 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-04 19:27:27] 2026-03-04 18:26:55,106 | INFO     | job 7036754905 has completed (purged errors)
[2026-03-04 19:27:27] 2026-03-04 18:26:55,106 | INFO     | overall cleanup function is called
[2026-03-04 19:27:27] 2026-03-04 18:26:56,113 | INFO     | --- collectZombieJob: --- 10, [816278]
[2026-03-04 19:27:27] 2026-03-04 18:26:56,113 | INFO     | zombie collector waiting for pid 816278
[2026-03-04 19:27:27] 2026-03-04 18:26:56,113 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-04 19:27:27] 2026-03-04 18:26:56,113 | INFO     | collected zombie processes
[2026-03-04 19:27:27] 2026-03-04 18:26:56,113 | INFO     | will attempt to kill all subprocesses of pid=816278
[2026-03-04 19:27:27] 2026-03-04 18:26:56,166 | INFO     | process IDs to be killed: [816278] (in reverse order)
[2026-03-04 19:27:27] 2026-03-04 18:26:56,193 | WARNING  | found no corresponding commands to process id(s)
[2026-03-04 19:27:27] 2026-03-04 18:26:56,193 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-04 19:27:27] 2026-03-04 18:26:56,198 | INFO     | did not find any defunct processes belonging to 816278
[2026-03-04 19:27:27] 2026-03-04 18:26:56,202 | INFO     | did not find any defunct processes belonging to 816278
[2026-03-04 19:27:27] 2026-03-04 18:26:56,202 | INFO     | ready for new job
[2026-03-04 19:27:27] 2026-03-04 18:26:56,202 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-04 19:27:27] 2026-03-04 18:26:56,203 | INFO     | **************************************
[2026-03-04 19:27:27] 2026-03-04 18:26:56,203 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-04 19:27:27] 2026-03-04 18:26:56,203 | INFO     | **************************************
[2026-03-04 19:27:27] 2026-03-04 18:26:56,203 | INFO     | 
[2026-03-04 19:27:27] 2026-03-04 18:26:56,204 | INFO     | architecture information:
[2026-03-04 19:27:27] 2026-03-04 18:26:56,204 | INFO     | executing command: cat /etc/os-release
[2026-03-04 19:27:27] 2026-03-04 18:26:56,213 | INFO     | cat /etc/os-release:
[2026-03-04 19:27:27] NAME="CentOS Linux"
[2026-03-04 19:27:27] VERSION="7 (Core)"
[2026-03-04 19:27:27] ID="centos"
[2026-03-04 19:27:27] ID_LIKE="rhel fedora"
[2026-03-04 19:27:27] VERSION_ID="7"
[2026-03-04 19:27:27] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-04 19:27:27] ANSI_COLOR="0;31"
[2026-03-04 19:27:27] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-04 19:27:27] HOME_URL="https://www.centos.org/"
[2026-03-04 19:27:27] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-04 19:27:27] 
[2026-03-04 19:27:27] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-04 19:27:27] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-04 19:27:27] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-04 19:27:27] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-04 19:27:27] 
[2026-03-04 19:27:27] 2026-03-04 18:26:56,213 | INFO     | **************************************
[2026-03-04 19:27:27] 2026-03-04 18:26:56,242 | WARNING  | process 816278 can no longer be monitored (due to stat problems) - aborting
[2026-03-04 19:27:27] 2026-03-04 18:26:56,279 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-04 19:27:27] 2026-03-04 18:26:56,326 | INFO     | number of running child processes to parent process 816278: 1
[2026-03-04 19:27:27] 2026-03-04 18:26:56,326 | INFO     | maximum number of monitored processes: 6
[2026-03-04 19:27:27] 2026-03-04 18:26:56,326 | INFO     | aborting job monitoring since job object (job id=7036754905) has expired
[2026-03-04 19:27:27] 2026-03-04 18:26:56,716 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-04 19:27:27] 2026-03-04 18:26:56,728 | INFO     | sufficient remaining disk space (368210608128 B)
[2026-03-04 19:27:27] 2026-03-04 18:26:56,728 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-04 19:27:27] 2026-03-04 18:26:56,728 | INFO     | current server update state: UPDATING_FINAL
[2026-03-04 19:27:27] 2026-03-04 18:26:56,728 | INFO     | update_server=False
[2026-03-04 19:27:27] 2026-03-04 18:26:56,728 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-04 19:27:27] 2026-03-04 18:26:56,728 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-04 19:27:27] 2026-03-04 18:26:56,729 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-04 19:27:27] 2026-03-04 18:26:56,729 | INFO     | will abort loop
[2026-03-04 19:27:27] 2026-03-04 18:26:57,474 | INFO     | all job control threads have been joined
[2026-03-04 19:27:27] 2026-03-04 18:26:57,508 | INFO     | all payload control threads have been joined
[2026-03-04 19:27:27] 2026-03-04 18:26:57,589 | INFO     | all data control threads have been joined
[2026-03-04 19:27:27] 2026-03-04 18:26:57,734 | INFO     | [job] retrieve thread has finished
[2026-03-04 19:27:27] 2026-03-04 18:26:57,734 | INFO     | [job] queue monitor thread has finished
[2026-03-04 19:27:27] 2026-03-04 18:26:57,734 | INFO     | [job] job monitor thread has finished
[2026-03-04 19:27:27] 2026-03-04 18:26:57,852 | INFO     | [payload] validate_pre thread has finished
[2026-03-04 19:27:27] 2026-03-04 18:26:57,862 | INFO     | [data] copytool_in thread has finished
[2026-03-04 19:27:27] 2026-03-04 18:26:57,865 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-04 19:27:27] 2026-03-04 18:26:58,019 | INFO     | [payload] execute_payloads thread has finished
[2026-03-04 19:27:27] 2026-03-04 18:26:58,353 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-04 19:27:27] 2026-03-04 18:26:58,476 | INFO     | [job] control thread has finished
[2026-03-04 19:27:27] 2026-03-04 18:26:58,514 | INFO     | [payload] control thread has finished
[2026-03-04 19:27:27] 2026-03-04 18:26:58,549 | INFO     | [payload] validate_post thread has finished
[2026-03-04 19:27:27] 2026-03-04 18:26:58,595 | INFO     | [data] control thread has finished
[2026-03-04 19:27:27] 2026-03-04 18:26:59,215 | INFO     | [job] validate thread has finished
[2026-03-04 19:27:27] 2026-03-04 18:26:59,223 | INFO     | [job] create_data_payload thread has finished
[2026-03-04 19:27:27] 2026-03-04 18:26:59,266 | INFO     | [payload] failed_post thread has finished
[2026-03-04 19:27:27] 2026-03-04 18:26:59,871 | INFO     | [data] copytool_out thread has finished
[2026-03-04 19:27:27] 2026-03-04 18:27:02,360 | INFO     | [data] queue_monitor thread has finished
[2026-03-04 19:27:27] 2026-03-04 18:27:07,071 | INFO     | job.realtimelogging is not enabled
[2026-03-04 19:27:27] 2026-03-04 18:27:08,077 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-04 19:27:27] 2026-03-04 18:27:15,996 | INFO     | [monitor] cgroup control has ended
[2026-03-04 19:27:27] 2026-03-04 18:27:16,464 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140188912645952)>', '<ExcThread(monitor, started 140188562990848)>']
[2026-03-04 19:27:27] 2026-03-04 18:27:21,478 | INFO     | all workflow threads have been joined
[2026-03-04 19:27:27] 2026-03-04 18:27:21,479 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-04 19:27:27] 2026-03-04 18:27:21,479 | INFO     | traces error code: 0
[2026-03-04 19:27:27] 2026-03-04 18:27:21,479 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-04 19:27:27] 2026-03-04 18:27:27,408 | INFO     | PID=811861 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-04 19:27:27] 2026-03-04 18:27:27,408 | INFO     | found 0 job(s) in 20 queues
[2026-03-04 19:27:27] 2026-03-04 18:27:27,408 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-04 19:27:27] 2026-03-04 18:27:27,408 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-04 19:27:27] 2026-03-04 18:27:27,408 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-04 19:27:27] 2026-03-04 18:27:27,408 | INFO     | [monitor] control thread has ended
[2026-03-04 19:27:27] 2026-03-04 18:27:27,455 [wrapper] ==== pilot stdout END ====
[2026-03-04 19:27:27] 2026-03-04 18:27:27,458 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-04 19:27:27] 2026-03-04 18:27:27,460 [wrapper] pilotpid: 811861
[2026-03-04 19:27:27] 2026-03-04 18:27:27,462 [wrapper] Pilot exit status: 0
[2026-03-04 19:27:27] 2026-03-04 18:27:27,469 [wrapper] pandaids: 7036754905
[2026-03-04 19:27:27] 2026-03-04 18:27:27,487 [wrapper] cleanup supervisor_pilot  821720 811862
[2026-03-04 19:27:27] 2026-03-04 18:27:27,489 [wrapper] Test setup, not cleaning
[2026-03-04 19:27:27] 2026-03-04 18:27:27,492 [wrapper] apfmon messages muted
[2026-03-04 19:27:27] 2026-03-04 18:27:27,494 [wrapper] ==== wrapper stdout END ====
[2026-03-04 19:27:27] 2026-03-04 18:27:27,496 [wrapper] ==== wrapper stderr END ====
[2026-03-04 19:27:27]  *** Error codes and diagnostics ***
[2026-03-04 19:27:27]     "exeErrorCode": 0,
[2026-03-04 19:27:27]     "exeErrorDiag": "",
[2026-03-04 19:27:27]     "pilotErrorCode": 0,
[2026-03-04 19:27:27]     "pilotErrorDiag": "",
[2026-03-04 19:27:27]  *** Listing of results directory ***
[2026-03-04 19:27:27] total 505408
[2026-03-04 19:27:27] -rw-r--r-- 1 boinc boinc    584627 Mar  3 23:22 pilot3.tar.gz
[2026-03-04 19:27:27] -rwx------ 1 boinc boinc     36322 Mar  3 23:22 runpilot2-wrapper.sh
[2026-03-04 19:27:27] -rw-r--r-- 1 boinc boinc      5111 Mar  3 23:22 queuedata.json
[2026-03-04 19:27:27] -rw-r--r-- 1 boinc boinc       100 Mar  4 17:47 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-04 19:27:27] -rwxr-xr-x 1 boinc boinc      7986 Mar  4 17:47 run_atlas
[2026-03-04 19:27:27] -rw-r--r-- 1 boinc boinc       105 Mar  4 17:47 job.xml
[2026-03-04 19:27:27] -rw-r--r-- 2 boinc boinc 289367303 Mar  4 17:47 EVNT.48220197._000242.pool.root.1
[2026-03-04 19:27:27] -rw-r--r-- 2 boinc boinc    597969 Mar  4 17:47 input.tar.gz
[2026-03-04 19:27:27] -rw-r--r-- 2 boinc boinc     15845 Mar  4 17:47 start_atlas.sh
[2026-03-04 19:27:27] drwxrwx--x 2 boinc boinc      4096 Mar  4 17:47 shared
[2026-03-04 19:27:27] -rw-r--r-- 1 boinc boinc         0 Mar  4 17:47 boinc_setup_complete
[2026-03-04 19:27:27] -rw-r--r-- 1 boinc boinc      6447 Mar  4 17:47 init_data.xml
[2026-03-04 19:27:27] -rw-r--r-- 1 boinc boinc         0 Mar  4 17:47 boinc_lockfile
[2026-03-04 19:27:27] -rw-r--r-- 1 boinc boinc      2567 Mar  4 17:47 pandaJob.out
[2026-03-04 19:27:27] -rw------- 1 boinc boinc    997352 Mar  4 17:48 agis_schedconf.cvmfs.json
[2026-03-04 19:27:27] -rw------- 1 boinc boinc   1516092 Mar  4 17:48 agis_ddmendpoints.agis.ALL.json
[2026-03-04 19:27:27] -rw------- 1 boinc boinc       426 Mar  4 17:48 workernode_map.json
[2026-03-04 19:27:27] drwx------ 5 boinc boinc      4096 Mar  4 17:48 pilot3
[2026-03-04 19:27:27] -rw-r--r-- 1 boinc boinc       529 Mar  4 19:26 boinc_task_state.xml
[2026-03-04 19:27:27] -rw------- 1 boinc boinc 222018951 Mar  4 19:26 HITS.48838577._006100.pool.root.1
[2026-03-04 19:27:27] -rw------- 1 boinc boinc        95 Mar  4 19:26 pilot_heartbeat.json
[2026-03-04 19:27:27] -rw------- 1 boinc boinc      1015 Mar  4 19:26 memory_monitor_summary.json
[2026-03-04 19:27:27] -rw------- 1 boinc boinc    258030 Mar  4 19:26 log.48838577._006100.job.log.tgz.1
[2026-03-04 19:27:27] -rw------- 1 boinc boinc      6305 Mar  4 19:26 heartbeat.json
[2026-03-04 19:27:27] -rw-r--r-- 1 boinc boinc        27 Mar  4 19:26 wrapper_checkpoint.txt
[2026-03-04 19:27:27] -rw-r--r-- 1 boinc boinc      8192 Mar  4 19:26 boinc_mmap_file
[2026-03-04 19:27:27] -rw------- 1 boinc boinc       746 Mar  4 19:27 pilotlog.txt
[2026-03-04 19:27:27] -rw------- 1 boinc boinc    859174 Mar  4 19:27 log.48838577._006100.job.log.1
[2026-03-04 19:27:27] -rw------- 1 boinc boinc       357 Mar  4 19:27 output.list
[2026-03-04 19:27:27] -rw-r--r-- 1 boinc boinc       620 Mar  4 19:27 runtime_log
[2026-03-04 19:27:27] -rw------- 1 boinc boinc   1136640 Mar  4 19:27 result.tar.gz
[2026-03-04 19:27:27] -rw-r--r-- 1 boinc boinc      8911 Mar  4 19:27 runtime_log.err
[2026-03-04 19:27:27] -rw------- 1 boinc boinc       660 Mar  4 19:27 c3dNDmQJnH9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmA5HLDmXas4Dn.diag
[2026-03-04 19:27:27] -rw-r--r-- 1 boinc boinc     12135 Mar  4 19:27 stderr.txt
[2026-03-04 19:27:27] HITS file was successfully produced:
[2026-03-04 19:27:27] -rw------- 1 boinc boinc 222018951 Mar  4 19:26 shared/HITS.pool.root.1
[2026-03-04 19:27:27]  *** Contents of shared directory: ***
[2026-03-04 19:27:27] total 501124
[2026-03-04 19:27:27] -rw-r--r-- 2 boinc boinc 289367303 Mar  4 17:47 ATLAS.root_0
[2026-03-04 19:27:27] -rw-r--r-- 2 boinc boinc    597969 Mar  4 17:47 input.tar.gz
[2026-03-04 19:27:27] -rw-r--r-- 2 boinc boinc     15845 Mar  4 17:47 start_atlas.sh
[2026-03-04 19:27:27] -rw------- 1 boinc boinc 222018951 Mar  4 19:26 HITS.pool.root.1
[2026-03-04 19:27:27] -rw------- 1 boinc boinc   1136640 Mar  4 19:27 result.tar.gz
19:27:29 (807818): run_atlas exited; CPU time 16992.718196
19:27:29 (807818): called boinc_finish(0)

</stderr_txt>
]]>

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