Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
18:39:58 (1719971): wrapper (7.7.26015): starting
18:39:58 (1719971): wrapper: running run_atlas (--nthreads 9)
[2026-03-03 18:39:58] Arguments: --nthreads 9
[2026-03-03 18:39:58] Threads: 9
[2026-03-03 18:39:58] Checking for CVMFS
[2026-03-03 18:39:58] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-03 18:39:59] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-03 18:39:59] Running cvmfs_config stat atlas.cern.ch
[2026-03-03 18:39:59] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-03 18:39:59] 2.13.3.0 5924 98501 201452 156862 0 181 29627313 39288832 8875 16776704 0 65380233 99.515 96222563 35350 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-03-03 18:39:59] CVMFS is ok
[2026-03-03 18:39:59] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-03 18:39:59] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-03 18:39:59] Further information can be found at the LHC@home message board.
[2026-03-03 18:39:59] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-03 18:39:59] Checking for apptainer binary...
[2026-03-03 18:39:59] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-03 18:39:59] Running /usr/bin/apptainer --version
[2026-03-03 18:39:59] apptainer version 1.4.5-2.el9
[2026-03-03 18:39:59] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-03 18:39:59] c-210-3.aglt2.org
[2026-03-03 18:39:59] apptainer works
[2026-03-03 18:39:59] Set ATHENA_PROC_NUMBER=9
[2026-03-03 18:39:59] Set ATHENA_CORE_NUMBER=9
[2026-03-03 18:39:59] Starting ATLAS job with PandaID=7036700853
[2026-03-03 18:39:59] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-03 21:22:01]  *** The last 200 lines of the pilot log: ***
[2026-03-03 21:22:01] 2026-03-04 02:20:56,336 | INFO     | reading metadata from: /tmp/boinchome/slots/3/PanDA_Pilot-7036700853/jobReport.json
[2026-03-03 21:22:01] 2026-03-04 02:20:56,338 | INFO     | added worker_node to metadata from /tmp/boinchome/slots/3/workernode_map.json
[2026-03-03 21:22:01] 2026-03-04 02:20:56,339 | INFO     | this job has now completed (state=finished)
[2026-03-03 21:22:01] 2026-03-04 02:20:56,339 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-03 21:22:01] 2026-03-04 02:20:56,339 | INFO     | log transfer has been attempted: DONE
[2026-03-03 21:22:01] 2026-03-04 02:20:56,339 | INFO     | job 7036700853 has finished - writing final server update
[2026-03-03 21:22:01] 2026-03-04 02:20:56,340 | INFO     | total number of processed events: 400 (read)
[2026-03-03 21:22:01] 2026-03-04 02:20:56,346 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-7036700853/memory_monitor_summary.json (trf name=prmon)
[2026-03-03 21:22:01] 2026-03-04 02:20:56,347 | INFO     | extracted standard info from prmon json
[2026-03-03 21:22:01] 2026-03-04 02:20:56,347 | INFO     | extracted standard memory fields from prmon json
[2026-03-03 21:22:01] 2026-03-04 02:20:56,347 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-03 21:22:01] 2026-03-04 02:20:56,347 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-03 21:22:01] 2026-03-04 02:20:56,348 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-03 21:22:01] 2026-03-04 02:20:56,351 | INFO     | fitting pss+swap vs Time
[2026-03-03 21:22:01] 2026-03-04 02:20:56,351 | INFO     | sum of square deviations: 1199940638.0
[2026-03-03 21:22:01] 2026-03-04 02:20:56,352 | INFO     | sum of deviations: 15501224779.000002
[2026-03-03 21:22:01] 2026-03-04 02:20:56,352 | INFO     | mean x: 1772586033.0
[2026-03-03 21:22:01] 2026-03-04 02:20:56,353 | INFO     | mean y: 2594211.2356687896
[2026-03-03 21:22:01] 2026-03-04 02:20:56,353 | INFO     | intersect: -22896250671.163353
[2026-03-03 21:22:01] 2026-03-04 02:20:56,353 | INFO     | chi2: 1.8012667562218436
[2026-03-03 21:22:01] 2026-03-04 02:20:56,353 | INFO     | sum of square deviations: 1088905998.0
[2026-03-03 21:22:01] 2026-03-04 02:20:56,354 | INFO     | sum of deviations: 14940373912.500004
[2026-03-03 21:22:01] 2026-03-04 02:20:56,354 | INFO     | mean x: 1772585880.5
[2026-03-03 21:22:01] 2026-03-04 02:20:56,355 | INFO     | mean y: 2593440.4013157897
[2026-03-03 21:22:01] 2026-03-04 02:20:56,355 | INFO     | intersect: -24318234891.272587
[2026-03-03 21:22:01] 2026-03-04 02:20:56,355 | INFO     | chi2: 1.8033398641652272
[2026-03-03 21:22:01] 2026-03-04 02:20:56,355 | INFO     | current chi2=1.8033398641652272 (change=-0.11509166736257874 %)
[2026-03-03 21:22:01] 2026-03-04 02:20:56,355 | INFO     | right removable region: 151
[2026-03-03 21:22:01] 2026-03-04 02:20:56,356 | INFO     | sum of square deviations: 1088905998.0
[2026-03-03 21:22:01] 2026-03-04 02:20:56,356 | INFO     | sum of deviations: -12978343530.000002
[2026-03-03 21:22:01] 2026-03-04 02:20:56,357 | INFO     | mean x: 1772586185.5
[2026-03-03 21:22:01] 2026-03-04 02:20:56,357 | INFO     | mean y: 2632830.710526316
[2026-03-03 21:22:01] 2026-03-04 02:20:56,357 | INFO     | intersect: 21129555167.629555
[2026-03-03 21:22:01] 2026-03-04 02:20:56,357 | INFO     | chi2: 0.08098400470039062
[2026-03-03 21:22:01] 2026-03-04 02:20:56,357 | INFO     | current chi2=0.08098400470039062 (change=95.50405266623281 %)
[2026-03-03 21:22:01] 2026-03-04 02:20:56,358 | INFO     | sum of square deviations: 984941258.0
[2026-03-03 21:22:01] 2026-03-04 02:20:56,358 | INFO     | sum of deviations: -13951710770.0
[2026-03-03 21:22:01] 2026-03-04 02:20:56,359 | INFO     | mean x: 1772586338.0
[2026-03-03 21:22:01] 2026-03-04 02:20:56,359 | INFO     | mean y: 2634219.5578231295
[2026-03-03 21:22:01] 2026-03-04 02:20:56,359 | INFO     | intersect: 25111351822.521164
[2026-03-03 21:22:01] 2026-03-04 02:20:56,359 | INFO     | chi2: 0.06482616336524893
[2026-03-03 21:22:01] 2026-03-04 02:20:56,359 | INFO     | current chi2=0.06482616336524893 (change=19.95189222232146 %)
[2026-03-03 21:22:01] 2026-03-04 02:20:56,359 | INFO     | left removable region: 20
[2026-03-03 21:22:01] 2026-03-04 02:20:56,360 | INFO     | sum of square deviations: 697054930.0
[2026-03-03 21:22:01] 2026-03-04 02:20:56,360 | INFO     | sum of deviations: -8227424044.000001
[2026-03-03 21:22:01] 2026-03-04 02:20:56,361 | INFO     | mean x: 1772586460.0
[2026-03-03 21:22:01] 2026-03-04 02:20:56,361 | INFO     | mean y: 2625463.5572519084
[2026-03-03 21:22:01] 2026-03-04 02:20:56,361 | INFO     | intersect: 20924678853.34225
[2026-03-03 21:22:01] 2026-03-04 02:20:56,361 | INFO     | chi2: 0.0554375321035005
[2026-03-03 21:22:01] 2026-03-04 02:20:56,361 | INFO     | current memory leak: -11.80 B/s (using 131 data points, chi2=0.06)
[2026-03-03 21:22:01] 2026-03-04 02:20:56,362 | INFO     | could have reported an average CPU frequency of 2599 MHz (9 samples)
[2026-03-03 21:22:01] 2026-03-04 02:20:56,362 | INFO     | ..............................
[2026-03-03 21:22:01] 2026-03-04 02:20:56,362 | INFO     | . Timing measurements:
[2026-03-03 21:22:01] 2026-03-04 02:20:56,362 | INFO     | . get job = 0 s
[2026-03-03 21:22:01] 2026-03-04 02:20:56,362 | INFO     | . initial setup = 16 s
[2026-03-03 21:22:01] 2026-03-04 02:20:56,362 | INFO     | . payload setup = 20 s
[2026-03-03 21:22:01] 2026-03-04 02:20:56,363 | INFO     | . stage-in = 0 s
[2026-03-03 21:22:01] 2026-03-04 02:20:56,363 | INFO     | . payload execution = 9589 s
[2026-03-03 21:22:01] 2026-03-04 02:20:56,363 | INFO     | . stage-out = 0 s
[2026-03-03 21:22:01] 2026-03-04 02:20:56,363 | INFO     | . log creation = 0 s
[2026-03-03 21:22:01] 2026-03-04 02:20:56,363 | INFO     | ..............................
[2026-03-03 21:22:01] 2026-03-04 02:20:56,509 | INFO     | time since job start (9617s) is within the limit (349056.0s)
[2026-03-03 21:22:01] 2026-03-04 02:20:56,609 | INFO     | 
[2026-03-03 21:22:01] 2026-03-04 02:20:56,610 | INFO     | job summary report
[2026-03-03 21:22:01] 2026-03-04 02:20:56,610 | INFO     | --------------------------------------------------
[2026-03-03 21:22:01] 2026-03-04 02:20:56,610 | INFO     | PanDA job id: 7036700853
[2026-03-03 21:22:01] 2026-03-04 02:20:56,610 | INFO     | task id: 48838577
[2026-03-03 21:22:01] 2026-03-04 02:20:56,610 | INFO     | errors: (none)
[2026-03-03 21:22:01] 2026-03-04 02:20:56,610 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-03 21:22:01] 2026-03-04 02:20:56,610 | INFO     | pilot state: finished 
[2026-03-03 21:22:01] 2026-03-04 02:20:56,610 | INFO     | transexitcode: 0
[2026-03-03 21:22:01] 2026-03-04 02:20:56,610 | INFO     | exeerrorcode: 0
[2026-03-03 21:22:01] 2026-03-04 02:20:56,611 | INFO     | exeerrordiag: 
[2026-03-03 21:22:01] 2026-03-04 02:20:56,611 | INFO     | exitcode: 0
[2026-03-03 21:22:01] 2026-03-04 02:20:56,611 | INFO     | exitmsg: OK
[2026-03-03 21:22:01] 2026-03-04 02:20:56,611 | INFO     | cpuconsumptiontime: 53888 s
[2026-03-03 21:22:01] 2026-03-04 02:20:56,611 | INFO     | nevents: 400
[2026-03-03 21:22:01] 2026-03-04 02:20:56,611 | INFO     | neventsw: 0
[2026-03-03 21:22:01] 2026-03-04 02:20:56,611 | INFO     | pid: 1729828
[2026-03-03 21:22:01] 2026-03-04 02:20:56,611 | INFO     | pgrp: 1729828
[2026-03-03 21:22:01] 2026-03-04 02:20:56,611 | INFO     | corecount: 9
[2026-03-03 21:22:01] 2026-03-04 02:20:56,612 | INFO     | event service: False
[2026-03-03 21:22:01] 2026-03-04 02:20:56,612 | INFO     | sizes: {0: 2286645, 1: 2287106, 9614: 2315452, 9615: 2324450, 9616: 2324764}
[2026-03-03 21:22:01] 2026-03-04 02:20:56,612 | INFO     | --------------------------------------------------
[2026-03-03 21:22:01] 2026-03-04 02:20:56,612 | INFO     | 
[2026-03-03 21:22:01] 2026-03-04 02:20:56,612 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2026-03-03 21:22:01] 2026-03-04 02:20:56,629 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-03 21:22:01] 2026-03-04 02:20:56,629 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-03 21:22:01] 2026-03-04 02:20:56,629 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-03 21:22:01] 2026-03-04 02:20:56,629 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-03 21:22:01] 2026-03-04 02:20:56,630 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-03 21:22:01] 2026-03-04 02:20:56,630 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-03 21:22:01] 2026-03-04 02:20:56,630 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-03 21:22:01] 2026-03-04 02:20:56,630 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-03 21:22:01] 2026-03-04 02:20:56,630 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-03 21:22:01] 2026-03-04 02:20:56,630 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-03 21:22:01] 2026-03-04 02:20:56,630 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-03 21:22:01] 2026-03-04 02:20:56,631 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-03 21:22:01] 2026-03-04 02:20:56,631 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-03 21:22:01] 2026-03-04 02:20:56,631 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-03 21:22:01] 2026-03-04 02:20:56,631 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-03 21:22:01] 2026-03-04 02:20:56,631 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-03 21:22:01] 2026-03-04 02:20:56,631 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-03 21:22:01] 2026-03-04 02:20:56,631 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-03 21:22:01] 2026-03-04 02:20:56,631 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-03 21:22:01] 2026-03-04 02:20:56,632 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-03 21:22:01] 2026-03-04 02:20:56,632 | INFO     | job 7036700853 has completed (purged errors)
[2026-03-03 21:22:01] 2026-03-04 02:20:56,632 | INFO     | overall cleanup function is called
[2026-03-03 21:22:01] 2026-03-04 02:20:57,640 | INFO     | --- collectZombieJob: --- 10, [1729828]
[2026-03-03 21:22:01] 2026-03-04 02:20:57,640 | INFO     | zombie collector waiting for pid 1729828
[2026-03-03 21:22:01] 2026-03-04 02:20:57,640 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-03 21:22:01] 2026-03-04 02:20:57,640 | INFO     | collected zombie processes
[2026-03-03 21:22:01] 2026-03-04 02:20:57,640 | INFO     | will attempt to kill all subprocesses of pid=1729828
[2026-03-03 21:22:01] 2026-03-04 02:20:58,134 | INFO     | PID=1725382 has CPU usage=14.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-03-03 21:22:01] 2026-03-04 02:20:58,135 | INFO     | .. there are 12 such processes running
[2026-03-03 21:22:01] 2026-03-04 02:20:58,199 | INFO     | process IDs to be killed: [1729828] (in reverse order)
[2026-03-03 21:22:01] 2026-03-04 02:20:58,286 | WARNING  | found no corresponding commands to process id(s)
[2026-03-03 21:22:01] 2026-03-04 02:20:58,286 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-03 21:22:01] 2026-03-04 02:20:58,296 | INFO     | did not find any defunct processes belonging to 1729828
[2026-03-03 21:22:01] 2026-03-04 02:20:58,304 | INFO     | did not find any defunct processes belonging to 1729828
[2026-03-03 21:22:01] 2026-03-04 02:20:58,305 | INFO     | ready for new job
[2026-03-03 21:22:01] 2026-03-04 02:20:58,305 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-03 21:22:01] 2026-03-04 02:20:58,307 | INFO     | **************************************
[2026-03-03 21:22:01] 2026-03-04 02:20:58,307 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-03 21:22:01] 2026-03-04 02:20:58,307 | INFO     | **************************************
[2026-03-03 21:22:01] 2026-03-04 02:20:58,307 | INFO     | 
[2026-03-03 21:22:01] 2026-03-04 02:20:58,309 | INFO     | architecture information:
[2026-03-03 21:22:01] 2026-03-04 02:20:58,309 | INFO     | executing command: cat /etc/os-release
[2026-03-03 21:22:01] 2026-03-04 02:20:58,324 | INFO     | cat /etc/os-release:
[2026-03-03 21:22:01] NAME="CentOS Linux"
[2026-03-03 21:22:01] VERSION="7 (Core)"
[2026-03-03 21:22:01] ID="centos"
[2026-03-03 21:22:01] ID_LIKE="rhel fedora"
[2026-03-03 21:22:01] VERSION_ID="7"
[2026-03-03 21:22:01] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-03 21:22:01] ANSI_COLOR="0;31"
[2026-03-03 21:22:01] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-03 21:22:01] HOME_URL="https://www.centos.org/"
[2026-03-03 21:22:01] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-03 21:22:01] 
[2026-03-03 21:22:01] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-03 21:22:01] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-03 21:22:01] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-03 21:22:01] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-03 21:22:01] 
[2026-03-03 21:22:01] 2026-03-04 02:20:58,325 | INFO     | **************************************
[2026-03-03 21:22:01] 2026-03-04 02:20:58,828 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2026-03-03 21:22:01] 2026-03-04 02:20:58,842 | INFO     | sufficient remaining disk space (50911510528 B)
[2026-03-03 21:22:01] 2026-03-04 02:20:58,842 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-03 21:22:01] 2026-03-04 02:20:58,843 | INFO     | current server update state: UPDATING_FINAL
[2026-03-03 21:22:01] 2026-03-04 02:20:58,843 | INFO     | update_server=False
[2026-03-03 21:22:01] 2026-03-04 02:20:58,843 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-03 21:22:01] 2026-03-04 02:20:58,843 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-03-03 21:22:01] 2026-03-04 02:20:58,843 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-03 21:22:01] 2026-03-04 02:20:58,844 | INFO     | found 0 job(s) in 20 queues
[2026-03-03 21:22:01] 2026-03-04 02:20:58,844 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-03 21:22:01] 2026-03-04 02:20:58,844 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-03 21:22:01] 2026-03-04 02:20:58,965 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-03-03 21:22:01] 2026-03-04 02:20:58,966 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-03-03 21:22:01] 2026-03-04 02:20:58,966 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-03 21:22:01] 2026-03-04 02:20:58,966 | INFO     | will abort loop
[2026-03-03 21:22:01] 2026-03-04 02:20:59,490 | INFO     | all job control threads have been joined
[2026-03-03 21:22:01] 2026-03-04 02:20:59,696 | INFO     | all data control threads have been joined
[2026-03-03 21:22:01] 2026-03-04 02:20:59,846 | INFO     | [job] retrieve thread has finished
[2026-03-03 21:22:01] 2026-03-04 02:20:59,949 | INFO     | [payload] execute_payloads thread has finished
[2026-03-03 21:22:01] 2026-03-04 02:20:59,971 | INFO     | [job] job monitor thread has finished
[2026-03-03 21:22:01] 2026-03-04 02:20:59,998 | INFO     | [data] copytool_in thread has finished
[2026-03-03 21:22:01] 2026-03-04 02:21:00,047 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-03 21:22:01] 2026-03-04 02:21:00,064 | INFO     | all payload control threads have been joined
[2026-03-03 21:22:01] 2026-03-04 02:21:00,315 | INFO     | [payload] validate_post thread has finished
[2026-03-03 21:22:01] 2026-03-04 02:21:00,323 | INFO     | [payload] failed_post thread has finished
[2026-03-03 21:22:01] 2026-03-04 02:21:00,495 | INFO     | [job] control thread has finished
[2026-03-03 21:22:01] 2026-03-04 02:21:00,700 | INFO     | [data] control thread has finished
[2026-03-03 21:22:01] 2026-03-04 02:21:00,762 | INFO     | [payload] validate_pre thread has finished
[2026-03-03 21:22:01] 2026-03-04 02:21:00,805 | INFO     | [job] validate thread has finished
[2026-03-03 21:22:01] 2026-03-04 02:21:00,849 | INFO     | [data] copytool_out thread has finished
[2026-03-03 21:22:01] 2026-03-04 02:21:00,899 | INFO     | [job] create_data_payload thread has finished
[2026-03-03 21:22:01] 2026-03-04 02:21:01,071 | INFO     | [payload] control thread has finished
[2026-03-03 21:22:01] 2026-03-04 02:21:01,474 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-03 21:22:01] 2026-03-04 02:21:02,341 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-03 21:22:01] 2026-03-04 02:21:02,479 | INFO     | [job] queue monitor thread has finished
[2026-03-03 21:22:01] 2026-03-04 02:21:06,351 | INFO     | [data] queue_monitor thread has finished
[2026-03-03 21:22:01] 2026-03-04 02:21:54,911 | INFO     | [monitor] cgroup control has ended
[2026-03-03 21:22:01] 2026-03-04 02:21:56,251 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139802689685312)>', '<ExcThread(monitor, started 139802292762368)>']
[2026-03-03 21:22:01] 2026-03-04 02:21:57,206 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-03 21:22:01] 2026-03-04 02:21:57,206 | INFO     | [monitor] control thread has ended
[2026-03-03 21:22:01] 2026-03-04 02:22:01,277 | INFO     | all workflow threads have been joined
[2026-03-03 21:22:01] 2026-03-04 02:22:01,277 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-03 21:22:01] 2026-03-04 02:22:01,277 | INFO     | traces error code: 0
[2026-03-03 21:22:01] 2026-03-04 02:22:01,277 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-03 21:22:01] 2026-03-04 02:22:01,441 [wrapper] ==== pilot stdout END ====
[2026-03-03 21:22:01] 2026-03-04 02:22:01,444 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-03 21:22:01] 2026-03-04 02:22:01,446 [wrapper] pilotpid: 1725382
[2026-03-03 21:22:01] 2026-03-04 02:22:01,448 [wrapper] Pilot exit status: 0
[2026-03-03 21:22:01] 2026-03-04 02:22:01,466 [wrapper] pandaids: 7036700853
[2026-03-03 21:22:01] 2026-03-04 02:22:01,599 [wrapper] cleanup supervisor_pilot 1979790 1725383
[2026-03-03 21:22:01] 2026-03-04 02:22:01,603 [wrapper] Test setup, not cleaning
[2026-03-03 21:22:01] 2026-03-04 02:22:01,605 [wrapper] apfmon messages muted
[2026-03-03 21:22:01] 2026-03-04 02:22:01,607 [wrapper] ==== wrapper stdout END ====
[2026-03-03 21:22:01] 2026-03-04 02:22:01,610 [wrapper] ==== wrapper stderr END ====
[2026-03-03 21:22:01]  *** Error codes and diagnostics ***
[2026-03-03 21:22:01]     "exeErrorCode": 0,
[2026-03-03 21:22:01]     "exeErrorDiag": "",
[2026-03-03 21:22:01]     "pilotErrorCode": 0,
[2026-03-03 21:22:01]     "pilotErrorDiag": "",
[2026-03-03 21:22:01]  *** Listing of results directory ***
[2026-03-03 21:22:01] total 513108
[2026-03-03 21:22:01] -rw-r--r--. 1 boincer umatlas    584627 Mar  3 15:50 pilot3.tar.gz
[2026-03-03 21:22:01] -rwx------. 1 boincer umatlas     36322 Mar  3 16:17 runpilot2-wrapper.sh
[2026-03-03 21:22:01] -rw-r--r--. 1 boincer umatlas      5111 Mar  3 16:18 queuedata.json
[2026-03-03 21:22:01] -rw-r--r--. 1 boincer umatlas       100 Mar  3 18:39 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-03 21:22:01] -rwxr-xr-x. 1 boincer umatlas      7986 Mar  3 18:39 run_atlas
[2026-03-03 21:22:01] -rw-r--r--. 1 boincer umatlas       105 Mar  3 18:39 job.xml
[2026-03-03 21:22:01] -rw-r--r--. 2 boincer umatlas 290609362 Mar  3 18:39 EVNT.48220197._000186.pool.root.1
[2026-03-03 21:22:01] -rw-r--r--. 2 boincer umatlas     15845 Mar  3 18:39 start_atlas.sh
[2026-03-03 21:22:01] drwxrwx--x. 2 boincer umatlas      4096 Mar  3 18:39 shared
[2026-03-03 21:22:01] -rw-r--r--. 2 boincer umatlas    597971 Mar  3 18:39 input.tar.gz
[2026-03-03 21:22:01] -rw-r--r--. 1 boincer umatlas         0 Mar  3 18:39 boinc_lockfile
[2026-03-03 21:22:01] -rw-r--r--. 1 boincer umatlas      2567 Mar  3 18:39 pandaJob.out
[2026-03-03 21:22:01] -rw-------. 1 boincer umatlas        57 Mar  3 18:39 setup.sh.local
[2026-03-03 21:22:01] -rw-------. 1 boincer umatlas    998484 Mar  3 18:40 agis_schedconf.cvmfs.json
[2026-03-03 21:22:01] -rw-------. 1 boincer umatlas   1516092 Mar  3 18:40 agis_ddmendpoints.agis.ALL.json
[2026-03-03 21:22:01] -rw-------. 1 boincer umatlas       441 Mar  3 18:40 workernode_map.json
[2026-03-03 21:22:01] drwx------. 5 boincer umatlas      4096 Mar  3 18:40 pilot3
[2026-03-03 21:22:01] -rw-------. 1 boincer umatlas 227374936 Mar  3 21:20 HITS.48838577._004745.pool.root.1
[2026-03-03 21:22:01] -rw-r--r--. 1 boincer umatlas      6660 Mar  3 21:20 init_data.xml
[2026-03-03 21:22:01] -rw-r--r--. 1 boincer umatlas       530 Mar  3 21:20 boinc_task_state.xml
[2026-03-03 21:22:01] -rw-------. 1 boincer umatlas        95 Mar  3 21:20 pilot_heartbeat.json
[2026-03-03 21:22:01] -rw-------. 1 boincer umatlas      1039 Mar  3 21:20 memory_monitor_summary.json
[2026-03-03 21:22:01] -rw-------. 1 boincer umatlas    401226 Mar  3 21:20 log.48838577._004745.job.log.tgz.1
[2026-03-03 21:22:01] -rw-------. 1 boincer umatlas      6381 Mar  3 21:20 heartbeat.json
[2026-03-03 21:22:01] -rw-r--r--. 1 boincer umatlas      8192 Mar  3 21:22 boinc_mmap_file
[2026-03-03 21:22:01] -rw-r--r--. 1 boincer umatlas        27 Mar  3 21:22 wrapper_checkpoint.txt
[2026-03-03 21:22:01] -rw-------. 1 boincer umatlas      4734 Mar  3 21:22 pilotlog.txt
[2026-03-03 21:22:01] -rw-------. 1 boincer umatlas   1348951 Mar  3 21:22 log.48838577._004745.job.log.1
[2026-03-03 21:22:01] -rw-------. 1 boincer umatlas       357 Mar  3 21:22 output.list
[2026-03-03 21:22:01] -rw-r--r--. 1 boincer umatlas       620 Mar  3 21:22 runtime_log
[2026-03-03 21:22:01] -rw-------. 1 boincer umatlas   1771520 Mar  3 21:22 result.tar.gz
[2026-03-03 21:22:01] -rw-------. 1 boincer umatlas       652 Mar  3 21:22 xCMODmaImH9n9Rq4apOajLDm4fhM0noT9bVooX4SDmodFLDmIiYXzn.diag
[2026-03-03 21:22:01] -rw-r--r--. 1 boincer umatlas      9336 Mar  3 21:22 runtime_log.err
[2026-03-03 21:22:01] -rw-r--r--. 1 boincer umatlas     21276 Mar  3 21:22 stderr.txt
[2026-03-03 21:22:01] HITS file was successfully produced:
[2026-03-03 21:22:01] -rw-------. 1 boincer umatlas 227374936 Mar  3 21:20 shared/HITS.pool.root.1
[2026-03-03 21:22:01]  *** Contents of shared directory: ***
[2026-03-03 21:22:01] total 508184
[2026-03-03 21:22:01] -rw-r--r--. 2 boincer umatlas 290609362 Mar  3 18:39 ATLAS.root_0
[2026-03-03 21:22:01] -rw-r--r--. 2 boincer umatlas     15845 Mar  3 18:39 start_atlas.sh
[2026-03-03 21:22:01] -rw-r--r--. 2 boincer umatlas    597971 Mar  3 18:39 input.tar.gz
[2026-03-03 21:22:01] -rw-------. 1 boincer umatlas 227374936 Mar  3 21:20 HITS.pool.root.1
[2026-03-03 21:22:01] -rw-------. 1 boincer umatlas   1771520 Mar  3 21:22 result.tar.gz
21:22:03 (1719971): run_atlas exited; CPU time 54225.993750
21:22:03 (1719971): called boinc_finish(0)

</stderr_txt>
]]>

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