Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
02:10:53 (18568): wrapper (7.7.26015): starting
02:10:53 (18568): wrapper: running run_atlas (--nthreads 8)
[2026-03-04 02:10:53] Arguments: --nthreads 8
[2026-03-04 02:10:53] Threads: 8
[2026-03-04 02:10:53] Checking for CVMFS
[2026-03-04 02:10:53] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-04 02:10:54] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-04 02:10:54] Running cvmfs_config stat atlas.cern.ch
[2026-03-04 02:10:54] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-04 02:10:54] 2.11.0.0 7130 206104 82456 156863 3 1 3802713 4096001 0 130560 2 11254182 99.636 10269364 410 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2026-03-04 02:10:54] CVMFS is ok
[2026-03-04 02:10:54] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-04 02:10:54] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-04 02:10:54] Further information can be found at the LHC@home message board.
[2026-03-04 02:10:54] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-04 02:10:54] Checking for apptainer binary...
[2026-03-04 02:10:54] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2026-03-04 02:10:54] apptainer is not installed, using version from CVMFS
[2026-03-04 02:10:54] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-04 02:10:54] WARNING: Environment variable TMPDIR already has value [/tmp/job_11246933/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node427
[2026-03-04 02:10:54] apptainer works
[2026-03-04 02:10:54] Set ATHENA_PROC_NUMBER=8
[2026-03-04 02:10:54] Set ATHENA_CORE_NUMBER=8
[2026-03-04 02:10:54] Starting ATLAS job with PandaID=7036524201
[2026-03-04 02:10:54] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_11246933/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-04 03:16:15]  *** The last 200 lines of the pilot log: ***
[2026-03-04 03:16:15]  filetype=log
[2026-03-04 03:16:15]  guid=1c4bdb68-e72a-4b4a-badf-c546f04190e7
[2026-03-04 03:16:15]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-03-04 03:16:15]  is_altstaged=None
[2026-03-04 03:16:15]  is_tar=False
[2026-03-04 03:16:15]  lfn=log.48852273._000006.job.log.tgz.1
[2026-03-04 03:16:15]  mtime=0
[2026-03-04 03:16:15]  protocol_id=None
[2026-03-04 03:16:15]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-03-04 03:16:15]  replicas=None
[2026-03-04 03:16:15]  scope=mc23_13p6TeV
[2026-03-04 03:16:15]  status=None
[2026-03-04 03:16:15]  status_code=0
[2026-03-04 03:16:15]  storage_token=
[2026-03-04 03:16:15]  surl=/tmp/job_11246933/atlas/pilot/slots/0/PanDA_Pilot-7036524201/log.48852273._000006.job.log.tgz.1
[2026-03-04 03:16:15]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/d2/cf/log.48852273._000006.job.log.tgz.1
[2026-03-04 03:16:15]  workdir=None
[2026-03-04 03:16:15] ]
[2026-03-04 03:16:15] 2026-03-04 02:15:06,518 | INFO     | transferring file log.48852273._000006.job.log.tgz.1 from /tmp/job_11246933/atlas/pilot/slots/0/PanDA_Pilot-7036524201/log.48852273._000006.job.log.tgz.1 to /tmp/j
[2026-03-04 03:16:15] 2026-03-04 02:15:06,519 | INFO     | executing command: /usr/bin/env mv /tmp/job_11246933/atlas/pilot/slots/0/PanDA_Pilot-7036524201/log.48852273._000006.job.log.tgz.1 /tmp/job_11246933/atlas/pilot/sl
[2026-03-04 03:16:15] 2026-03-04 02:15:06,526 | INFO     | adding to output.list: log.48852273._000006.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/d2/cf/log.48852273._000006.job.log.tg
[2026-03-04 03:16:15] 2026-03-04 02:15:06,527 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-04 03:16:15] 2026-03-04 02:15:06,527 | INFO     | summary of transferred files:
[2026-03-04 03:16:15] 2026-03-04 02:15:06,527 | INFO     |  -- lfn=log.48852273._000006.job.log.tgz.1, status_code=0, status=transferred
[2026-03-04 03:16:15] 2026-03-04 02:15:06,527 | INFO     | stage-out finished correctly
[2026-03-04 03:16:15] 2026-03-04 02:15:06,580 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-04 03:16:15] 2026-03-04 02:15:06,630 | INFO     | job 7036524201 has state=finished
[2026-03-04 03:16:15] 2026-03-04 02:15:06,630 | INFO     | preparing for final server update for job 7036524201 in state='finished'
[2026-03-04 03:16:15] 2026-03-04 02:15:06,630 | INFO     | reading metadata from: /tmp/job_11246933/atlas/pilot/slots/0/PanDA_Pilot-7036524201/jobReport.json
[2026-03-04 03:16:15] 2026-03-04 02:15:06,632 | INFO     | added worker_node to metadata from /tmp/job_11246933/atlas/pilot/slots/0/workernode_map.json
[2026-03-04 03:16:15] 2026-03-04 02:15:06,632 | INFO     | this job has now completed (state=finished)
[2026-03-04 03:16:15] 2026-03-04 02:15:06,632 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-04 03:16:15] 2026-03-04 02:15:06,632 | INFO     | log transfer has been attempted: DONE
[2026-03-04 03:16:15] 2026-03-04 02:15:06,632 | INFO     | job 7036524201 has finished - writing final server update
[2026-03-04 03:16:15] 2026-03-04 02:15:06,632 | INFO     | total number of processed events: 400 (read)
[2026-03-04 03:16:15] 2026-03-04 02:15:06,650 | INFO     | using path: /tmp/job_11246933/atlas/pilot/slots/0/PanDA_Pilot-7036524201/memory_monitor_summary.json (trf name=prmon)
[2026-03-04 03:16:15] 2026-03-04 02:15:06,650 | INFO     | extracted standard info from prmon json
[2026-03-04 03:16:15] 2026-03-04 02:15:06,650 | INFO     | extracted standard memory fields from prmon json
[2026-03-04 03:16:15] 2026-03-04 02:15:06,651 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-04 03:16:15] 2026-03-04 02:15:06,651 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-04 03:16:15] 2026-03-04 02:15:06,651 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-04 03:16:15] 2026-03-04 02:15:06,651 | INFO     | fitting pss+swap vs Time
[2026-03-04 03:16:15] 2026-03-04 02:15:06,652 | INFO     | sum of square deviations: 54438230.0
[2026-03-04 03:16:15] 2026-03-04 02:15:06,652 | INFO     | sum of deviations: -158147471.50000006
[2026-03-04 03:16:15] 2026-03-04 02:15:06,652 | INFO     | mean x: 1772588661.5
[2026-03-04 03:16:15] 2026-03-04 02:15:06,652 | INFO     | mean y: 2545581.839285714
[2026-03-04 03:16:15] 2026-03-04 02:15:06,652 | INFO     | intersect: 5152059348.649752
[2026-03-04 03:16:15] 2026-03-04 02:15:06,652 | INFO     | chi2: 0.01032028436418396
[2026-03-04 03:16:15] 2026-03-04 02:15:06,652 | INFO     | current memory leak: -2.91 B/s (using 56 data points, chi2=0.01)
[2026-03-04 03:16:15] 2026-03-04 02:15:06,652 | INFO     | could have reported an average CPU frequency of 2379 MHz (6 samples)
[2026-03-04 03:16:15] 2026-03-04 02:15:06,652 | INFO     | ..............................
[2026-03-04 03:16:15] 2026-03-04 02:15:06,652 | INFO     | . Timing measurements:
[2026-03-04 03:16:15] 2026-03-04 02:15:06,652 | INFO     | . get job = 0 s
[2026-03-04 03:16:15] 2026-03-04 02:15:06,652 | INFO     | . initial setup = 3 s
[2026-03-04 03:16:15] 2026-03-04 02:15:06,652 | INFO     | . payload setup = 3 s
[2026-03-04 03:16:15] 2026-03-04 02:15:06,652 | INFO     | . stage-in = 0 s
[2026-03-04 03:16:15] 2026-03-04 02:15:06,652 | INFO     | . payload execution = 3825 s
[2026-03-04 03:16:15] 2026-03-04 02:15:06,652 | INFO     | . stage-out = 0 s
[2026-03-04 03:16:15] 2026-03-04 02:15:06,652 | INFO     | . log creation = 0 s
[2026-03-04 03:16:15] 2026-03-04 02:15:06,653 | INFO     | ..............................
[2026-03-04 03:16:15] 2026-03-04 02:15:07,141 | INFO     | 
[2026-03-04 03:16:15] 2026-03-04 02:15:07,141 | INFO     | job summary report
[2026-03-04 03:16:15] 2026-03-04 02:15:07,141 | INFO     | --------------------------------------------------
[2026-03-04 03:16:15] 2026-03-04 02:15:07,141 | INFO     | PanDA job id: 7036524201
[2026-03-04 03:16:15] 2026-03-04 02:15:07,141 | INFO     | task id: 48852273
[2026-03-04 03:16:15] 2026-03-04 02:15:07,141 | INFO     | errors: (none)
[2026-03-04 03:16:15] 2026-03-04 02:15:07,141 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-04 03:16:15] 2026-03-04 02:15:07,141 | INFO     | pilot state: finished 
[2026-03-04 03:16:15] 2026-03-04 02:15:07,141 | INFO     | transexitcode: 0
[2026-03-04 03:16:15] 2026-03-04 02:15:07,141 | INFO     | exeerrorcode: 0
[2026-03-04 03:16:15] 2026-03-04 02:15:07,141 | INFO     | exeerrordiag: 
[2026-03-04 03:16:15] 2026-03-04 02:15:07,141 | INFO     | exitcode: 0
[2026-03-04 03:16:15] 2026-03-04 02:15:07,142 | INFO     | exitmsg: OK
[2026-03-04 03:16:15] 2026-03-04 02:15:07,142 | INFO     | cpuconsumptiontime: 25426 s
[2026-03-04 03:16:15] 2026-03-04 02:15:07,142 | INFO     | nevents: 400
[2026-03-04 03:16:15] 2026-03-04 02:15:07,142 | INFO     | neventsw: 0
[2026-03-04 03:16:15] 2026-03-04 02:15:07,142 | INFO     | pid: 29059
[2026-03-04 03:16:15] 2026-03-04 02:15:07,142 | INFO     | pgrp: 29059
[2026-03-04 03:16:15] 2026-03-04 02:15:07,142 | INFO     | corecount: 8
[2026-03-04 03:16:15] 2026-03-04 02:15:07,142 | INFO     | event service: False
[2026-03-04 03:16:15] 2026-03-04 02:15:07,142 | INFO     | sizes: {0: 2287294, 11: 2287294, 3832: 2313312, 3833: 2322533}
[2026-03-04 03:16:15] 2026-03-04 02:15:07,142 | INFO     | --------------------------------------------------
[2026-03-04 03:16:15] 2026-03-04 02:15:07,142 | INFO     | 
[2026-03-04 03:16:15] 2026-03-04 02:15:07,142 | INFO     | executing command: ls -lF /tmp/job_11246933/atlas/pilot/slots/0
[2026-03-04 03:16:15] 2026-03-04 02:15:07,151 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-04 03:16:15] 2026-03-04 02:15:07,151 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-04 03:16:15] 2026-03-04 02:15:07,151 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-04 03:16:15] 2026-03-04 02:15:07,151 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-04 03:16:15] 2026-03-04 02:15:07,151 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-04 03:16:15] 2026-03-04 02:15:07,151 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-04 03:16:15] 2026-03-04 02:15:07,151 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-04 03:16:15] 2026-03-04 02:15:07,152 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-04 03:16:15] 2026-03-04 02:15:07,152 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-04 03:16:15] 2026-03-04 02:15:07,152 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-04 03:16:15] 2026-03-04 02:15:07,152 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-04 03:16:15] 2026-03-04 02:15:07,152 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-04 03:16:15] 2026-03-04 02:15:07,152 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-04 03:16:15] 2026-03-04 02:15:07,152 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-04 03:16:15] 2026-03-04 02:15:07,152 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-04 03:16:15] 2026-03-04 02:15:07,152 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-04 03:16:15] 2026-03-04 02:15:07,152 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-04 03:16:15] 2026-03-04 02:15:07,152 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-04 03:16:15] 2026-03-04 02:15:07,152 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-04 03:16:15] 2026-03-04 02:15:07,152 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-04 03:16:15] 2026-03-04 02:15:07,152 | INFO     | job 7036524201 has completed (purged errors)
[2026-03-04 03:16:15] 2026-03-04 02:15:07,152 | INFO     | overall cleanup function is called
[2026-03-04 03:16:15] 2026-03-04 02:15:08,157 | INFO     | --- collectZombieJob: --- 10, [29059]
[2026-03-04 03:16:15] 2026-03-04 02:15:08,157 | INFO     | zombie collector waiting for pid 29059
[2026-03-04 03:16:15] 2026-03-04 02:15:08,157 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-04 03:16:15] 2026-03-04 02:15:08,157 | INFO     | collected zombie processes
[2026-03-04 03:16:15] 2026-03-04 02:15:08,157 | INFO     | will attempt to kill all subprocesses of pid=29059
[2026-03-04 03:16:15] 2026-03-04 02:15:08,263 | INFO     | process IDs to be killed: [29059] (in reverse order)
[2026-03-04 03:16:15] 2026-03-04 02:15:08,299 | WARNING  | found no corresponding commands to process id(s)
[2026-03-04 03:16:15] 2026-03-04 02:15:08,299 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-04 03:16:15] 2026-03-04 02:15:08,303 | INFO     | did not find any defunct processes belonging to 29059
[2026-03-04 03:16:15] 2026-03-04 02:15:08,306 | INFO     | did not find any defunct processes belonging to 29059
[2026-03-04 03:16:15] 2026-03-04 02:15:08,306 | INFO     | ready for new job
[2026-03-04 03:16:15] 2026-03-04 02:15:08,306 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-04 03:16:15] 2026-03-04 02:15:08,307 | INFO     | **************************************
[2026-03-04 03:16:15] 2026-03-04 02:15:08,307 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-04 03:16:15] 2026-03-04 02:15:08,307 | INFO     | **************************************
[2026-03-04 03:16:15] 2026-03-04 02:15:08,307 | INFO     | 
[2026-03-04 03:16:15] 2026-03-04 02:15:08,321 | INFO     | architecture information:
[2026-03-04 03:16:15] 2026-03-04 02:15:08,321 | INFO     | executing command: cat /etc/os-release
[2026-03-04 03:16:15] 2026-03-04 02:15:08,326 | INFO     | cat /etc/os-release:
[2026-03-04 03:16:15] NAME="CentOS Linux"
[2026-03-04 03:16:15] VERSION="7 (Core)"
[2026-03-04 03:16:15] ID="centos"
[2026-03-04 03:16:15] ID_LIKE="rhel fedora"
[2026-03-04 03:16:15] VERSION_ID="7"
[2026-03-04 03:16:15] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-04 03:16:15] ANSI_COLOR="0;31"
[2026-03-04 03:16:15] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-04 03:16:15] HOME_URL="https://www.centos.org/"
[2026-03-04 03:16:15] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-04 03:16:15] 
[2026-03-04 03:16:15] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-04 03:16:15] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-04 03:16:15] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-04 03:16:15] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-04 03:16:15] 
[2026-03-04 03:16:15] 2026-03-04 02:15:08,327 | INFO     | **************************************
[2026-03-04 03:16:15] 2026-03-04 02:15:08,528 | WARNING  | process 29059 can no longer be monitored (due to stat problems) - aborting
[2026-03-04 03:16:15] 2026-03-04 02:15:08,610 | INFO     | using path: /tmp/job_11246933/atlas/pilot/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-04 03:16:15] 2026-03-04 02:15:08,713 | INFO     | number of running child processes to parent process 29059: 1
[2026-03-04 03:16:15] 2026-03-04 02:15:08,713 | INFO     | maximum number of monitored processes: 6
[2026-03-04 03:16:15] 2026-03-04 02:15:08,713 | INFO     | aborting job monitoring since job object (job id=7036524201) has expired
[2026-03-04 03:16:15] 2026-03-04 02:15:08,829 | INFO     | executing command: df -mP /tmp/job_11246933/atlas/pilot/slots/0
[2026-03-04 03:16:15] 2026-03-04 02:15:08,835 | INFO     | sufficient remaining disk space (223680135168 B)
[2026-03-04 03:16:15] 2026-03-04 02:15:08,835 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-04 03:16:15] 2026-03-04 02:15:08,835 | INFO     | current server update state: UPDATING_FINAL
[2026-03-04 03:16:15] 2026-03-04 02:15:08,835 | INFO     | update_server=False
[2026-03-04 03:16:15] 2026-03-04 02:15:08,835 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-04 03:16:15] 2026-03-04 02:15:08,836 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-04 03:16:15] 2026-03-04 02:15:08,836 | INFO     | will abort loop
[2026-03-04 03:16:15] 2026-03-04 02:15:08,836 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-04 03:16:15] 2026-03-04 02:15:09,005 | INFO     | all data control threads have been joined
[2026-03-04 03:16:15] 2026-03-04 02:15:09,341 | INFO     | all job control threads have been joined
[2026-03-04 03:16:15] 2026-03-04 02:15:09,535 | INFO     | all payload control threads have been joined
[2026-03-04 03:16:15] 2026-03-04 02:15:09,585 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-04 03:16:15] 2026-03-04 02:15:09,841 | INFO     | [job] job monitor thread has finished
[2026-03-04 03:16:15] 2026-03-04 02:15:09,841 | INFO     | [job] retrieve thread has finished
[2026-03-04 03:16:15] 2026-03-04 02:15:09,871 | INFO     | [payload] failed_post thread has finished
[2026-03-04 03:16:15] 2026-03-04 02:15:09,886 | INFO     | [data] copytool_in thread has finished
[2026-03-04 03:16:15] 2026-03-04 02:15:10,010 | INFO     | [data] control thread has finished
[2026-03-04 03:16:15] 2026-03-04 02:15:10,347 | INFO     | [job] control thread has finished
[2026-03-04 03:16:15] 2026-03-04 02:15:10,351 | INFO     | [payload] validate_post thread has finished
[2026-03-04 03:16:15] 2026-03-04 02:15:10,449 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-04 03:16:15] 2026-03-04 02:15:10,540 | INFO     | [payload] control thread has finished
[2026-03-04 03:16:15] 2026-03-04 02:15:10,761 | INFO     | [job] validate thread has finished
[2026-03-04 03:16:15] 2026-03-04 02:15:10,781 | INFO     | [job] create_data_payload thread has finished
[2026-03-04 03:16:15] 2026-03-04 02:15:10,897 | INFO     | [payload] validate_pre thread has finished
[2026-03-04 03:16:15] 2026-03-04 02:15:11,110 | INFO     | [payload] execute_payloads thread has finished
[2026-03-04 03:16:15] 2026-03-04 02:15:11,590 | INFO     | [data] copytool_out thread has finished
[2026-03-04 03:16:15] 2026-03-04 02:15:11,712 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-04 03:16:15] 2026-03-04 02:15:12,717 | INFO     | [job] queue monitor thread has finished
[2026-03-04 03:16:15] 2026-03-04 02:15:12,841 | INFO     | [data] queue_monitor thread has finished
[2026-03-04 03:16:15] 2026-03-04 02:15:38,700 | INFO     | PID=23433 has CPU usage=3.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-03-04 03:16:15] 2026-03-04 02:15:38,700 | INFO     | .. there are 5 such processes running
[2026-03-04 03:16:15] 2026-03-04 02:15:38,700 | INFO     | found 0 job(s) in 20 queues
[2026-03-04 03:16:15] 2026-03-04 02:15:38,700 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-04 03:16:15] 2026-03-04 02:15:38,700 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-04 03:16:15] 2026-03-04 02:16:08,301 | INFO     | [monitor] cgroup control has ended
[2026-03-04 03:16:15] 2026-03-04 02:16:10,137 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456065283840)>']
[2026-03-04 03:16:15] 2026-03-04 02:16:10,861 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-04 03:16:15] 2026-03-04 02:16:10,861 | INFO     | [monitor] control thread has ended
[2026-03-04 03:16:15] 2026-03-04 02:16:15,162 | INFO     | all workflow threads have been joined
[2026-03-04 03:16:15] 2026-03-04 02:16:15,162 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-04 03:16:15] 2026-03-04 02:16:15,162 | INFO     | traces error code: 0
[2026-03-04 03:16:15] 2026-03-04 02:16:15,162 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-04 03:16:15] 2026-03-04 02:16:15,221 [wrapper] ==== pilot stdout END ====
[2026-03-04 03:16:15] 2026-03-04 02:16:15,222 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-04 03:16:15] 2026-03-04 02:16:15,223 [wrapper] pilotpid: 23433
[2026-03-04 03:16:15] 2026-03-04 02:16:15,224 [wrapper] Pilot exit status: 0
[2026-03-04 03:16:15] 2026-03-04 02:16:15,230 [wrapper] pandaids: 7036524201
[2026-03-04 03:16:15] 2026-03-04 02:16:15,253 [wrapper] cleanup supervisor_pilot 31961 23434
[2026-03-04 03:16:15] 2026-03-04 02:16:15,255 [wrapper] Test setup, not cleaning
[2026-03-04 03:16:15] 2026-03-04 02:16:15,256 [wrapper] apfmon messages muted
[2026-03-04 03:16:15] 2026-03-04 02:16:15,257 [wrapper] ==== wrapper stdout END ====
[2026-03-04 03:16:15] 2026-03-04 02:16:15,258 [wrapper] ==== wrapper stderr END ====
[2026-03-04 03:16:15]  *** Error codes and diagnostics ***
[2026-03-04 03:16:15]     "exeErrorCode": 0,
[2026-03-04 03:16:15]     "exeErrorDiag": "",
[2026-03-04 03:16:15]     "pilotErrorCode": 0,
[2026-03-04 03:16:15]     "pilotErrorDiag": "",
[2026-03-04 03:16:15]  *** Listing of results directory ***
[2026-03-04 03:16:15] total 434776
[2026-03-04 03:16:15] -rw------- 1 mf493845 unix-user    584627 Mar  3 20:08 pilot3.tar.gz
[2026-03-04 03:16:15] -rwx------ 1 mf493845 unix-user     36322 Mar  3 20:18 runpilot2-wrapper.sh
[2026-03-04 03:16:15] -rw------- 1 mf493845 unix-user      5111 Mar  3 20:18 queuedata.json
[2026-03-04 03:16:15] -rw------- 1 mf493845 unix-user       100 Mar  4 01:08 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-04 03:16:15] -rwxr-xr-x 1 mf493845 unix-user      7986 Mar  4 01:08 run_atlas
[2026-03-04 03:16:15] -rw------- 1 mf493845 unix-user       105 Mar  4 01:08 job.xml
[2026-03-04 03:16:15] -rw-r--r-- 2 mf493845 unix-user 244816902 Mar  4 02:10 EVNT.48462182._000001.pool.root.1
[2026-03-04 03:16:15] -rw-r--r-- 2 mf493845 unix-user     15845 Mar  4 02:10 start_atlas.sh
[2026-03-04 03:16:15] drwxrwx--x 2 mf493845 unix-user       100 Mar  4 02:10 shared
[2026-03-04 03:16:15] -rw-r--r-- 2 mf493845 unix-user    597981 Mar  4 02:10 input.tar.gz
[2026-03-04 03:16:15] -rw------- 1 mf493845 unix-user      6391 Mar  4 02:10 init_data.xml
[2026-03-04 03:16:15] -rw------- 1 mf493845 unix-user         0 Mar  4 02:10 boinc_setup_complete
[2026-03-04 03:16:15] -rw------- 1 mf493845 unix-user      8192 Mar  4 02:10 boinc_mmap_file
[2026-03-04 03:16:15] -rw------- 1 mf493845 unix-user         0 Mar  4 02:10 boinc_lockfile
[2026-03-04 03:16:15] -rw------- 1 mf493845 unix-user      2642 Mar  4 02:10 pandaJob.out
[2026-03-04 03:16:15] -rw------- 1 mf493845 unix-user    998484 Mar  4 02:10 agis_schedconf.cvmfs.json
[2026-03-04 03:16:15] -rw------- 1 mf493845 unix-user   1516092 Mar  4 02:10 agis_ddmendpoints.agis.ALL.json
[2026-03-04 03:16:15] -rw------- 1 mf493845 unix-user       414 Mar  4 02:11 workernode_map.json
[2026-03-04 03:16:15] drwx------ 5 mf493845 unix-user       440 Mar  4 02:11 pilot3
[2026-03-04 03:16:15] -rw------- 1 mf493845 unix-user 194685506 Mar  4 03:14 HITS.48852273._000006.pool.root.1
[2026-03-04 03:16:15] -rw------- 1 mf493845 unix-user      1015 Mar  4 03:15 memory_monitor_summary.json
[2026-03-04 03:16:15] -rw------- 1 mf493845 unix-user    305248 Mar  4 03:15 log.48852273._000006.job.log.tgz.1
[2026-03-04 03:16:15] -rw------- 1 mf493845 unix-user      6290 Mar  4 03:15 heartbeat.json
[2026-03-04 03:16:15] -rw------- 1 mf493845 unix-user        95 Mar  4 03:15 pilot_heartbeat.json
[2026-03-04 03:16:15] -rw------- 1 mf493845 unix-user      5363 Mar  4 03:16 pilotlog.txt
[2026-03-04 03:16:15] -rw------- 1 mf493845 unix-user    596517 Mar  4 03:16 log.48852273._000006.job.log.1
[2026-03-04 03:16:15] -rw------- 1 mf493845 unix-user       357 Mar  4 03:16 output.list
[2026-03-04 03:16:15] -rw------- 1 mf493845 unix-user       620 Mar  4 03:16 runtime_log
[2026-03-04 03:16:15] -rw------- 1 mf493845 unix-user    921600 Mar  4 03:16 result.tar.gz
[2026-03-04 03:16:15] -rw------- 1 mf493845 unix-user       644 Mar  4 03:16 x1LLDmARkH9n9Rq4apOajLDm4fhM0noT9bVooX4SDmoPFLDmNH68xm.diag
[2026-03-04 03:16:15] -rw------- 1 mf493845 unix-user      9219 Mar  4 03:16 runtime_log.err
[2026-03-04 03:16:15] -rw------- 1 mf493845 unix-user     21792 Mar  4 03:16 stderr.txt
[2026-03-04 03:16:15] HITS file was successfully produced:
[2026-03-04 03:16:15] -rw------- 1 mf493845 unix-user 194685506 Mar  4 03:14 shared/HITS.pool.root.1
[2026-03-04 03:16:15]  *** Contents of shared directory: ***
[2026-03-04 03:16:15] total 430704
[2026-03-04 03:16:15] -rw-r--r-- 2 mf493845 unix-user 244816902 Mar  4 02:10 ATLAS.root_0
[2026-03-04 03:16:15] -rw-r--r-- 2 mf493845 unix-user     15845 Mar  4 02:10 start_atlas.sh
[2026-03-04 03:16:15] -rw-r--r-- 2 mf493845 unix-user    597981 Mar  4 02:10 input.tar.gz
[2026-03-04 03:16:15] -rw------- 1 mf493845 unix-user 194685506 Mar  4 03:14 HITS.pool.root.1
[2026-03-04 03:16:15] -rw------- 1 mf493845 unix-user    921600 Mar  4 03:16 result.tar.gz
03:16:17 (18568): run_atlas exited; CPU time 25481.691575
03:16:17 (18568): called boinc_finish(0)

</stderr_txt>
]]>

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