Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
12:31:04 (1553710): wrapper (7.7.26015): starting
12:31:04 (1553710): wrapper: running run_atlas (--nthreads 4)
[2026-03-04 12:31:04] Arguments: --nthreads 4
[2026-03-04 12:31:04] Threads: 4
[2026-03-04 12:31:04] Checking for CVMFS
[2026-03-04 12:31:04] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-04 12:31:05] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-04 12:31:05] Running cvmfs_config stat atlas.cern.ch
[2026-03-04 12:31:05] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-04 12:31:05] 2.9.2.0 37475 9780 102028 156880 1 50 28327572 36864000 0 130560 0 4209888 99.983 377314 14262 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-04 12:31:05] CVMFS is ok
[2026-03-04 12:31:05] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-04 12:31:05] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-04 12:31:05] Further information can be found at the LHC@home message board.
[2026-03-04 12:31:05] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-04 12:31:05] Checking for apptainer binary...
[2026-03-04 12:31:05] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-04 12:31:05] Running /usr/bin/apptainer --version
[2026-03-04 12:31:05] apptainer version 1.4.1-1.1
[2026-03-04 12:31:05] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-04 12:31:05] cosA131
[2026-03-04 12:31:05] apptainer works
[2026-03-04 12:31:05] Set ATHENA_PROC_NUMBER=4
[2026-03-04 12:31:05] Set ATHENA_CORE_NUMBER=4
[2026-03-04 12:31:05] Starting ATLAS job with PandaID=7036205000
[2026-03-04 12:31:05] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-04 13:56:34]  *** The last 200 lines of the pilot log: ***
[2026-03-04 13:56:34] 2026-03-04 12:56:15,195 | INFO     | overall cleanup function is called
[2026-03-04 13:56:34] 2026-03-04 12:56:16,202 | INFO     | --- collectZombieJob: --- 10, [1562344]
[2026-03-04 13:56:34] 2026-03-04 12:56:16,202 | INFO     | zombie collector waiting for pid 1562344
[2026-03-04 13:56:34] 2026-03-04 12:56:16,203 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-04 13:56:34] 2026-03-04 12:56:16,203 | INFO     | collected zombie processes
[2026-03-04 13:56:34] 2026-03-04 12:56:16,203 | INFO     | will attempt to kill all subprocesses of pid=1562344
[2026-03-04 13:56:34] 2026-03-04 12:56:16,244 | INFO     | process IDs to be killed: [1562344] (in reverse order)
[2026-03-04 13:56:34] 2026-03-04 12:56:16,278 | WARNING  | found no corresponding commands to process id(s)
[2026-03-04 13:56:34] 2026-03-04 12:56:16,278 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-04 13:56:34] 2026-03-04 12:56:16,279 | INFO     | did not find any defunct processes belonging to 1562344
[2026-03-04 13:56:34] 2026-03-04 12:56:16,281 | INFO     | did not find any defunct processes belonging to 1562344
[2026-03-04 13:56:34] 2026-03-04 12:56:16,281 | INFO     | ready for new job
[2026-03-04 13:56:34] 2026-03-04 12:56:16,281 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-04 13:56:34] 2026-03-04 12:56:16,281 | INFO     | **************************************
[2026-03-04 13:56:34] 2026-03-04 12:56:16,282 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-04 13:56:34] 2026-03-04 12:56:16,282 | INFO     | **************************************
[2026-03-04 13:56:34] 2026-03-04 12:56:16,282 | INFO     | 
[2026-03-04 13:56:34] 2026-03-04 12:56:16,282 | INFO     | architecture information:
[2026-03-04 13:56:34] 2026-03-04 12:56:16,282 | INFO     | executing command: cat /etc/os-release
[2026-03-04 13:56:34] 2026-03-04 12:56:16,297 | INFO     | cat /etc/os-release:
[2026-03-04 13:56:34] NAME="CentOS Linux"
[2026-03-04 13:56:34] VERSION="7 (Core)"
[2026-03-04 13:56:34] ID="centos"
[2026-03-04 13:56:34] ID_LIKE="rhel fedora"
[2026-03-04 13:56:34] VERSION_ID="7"
[2026-03-04 13:56:34] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-04 13:56:34] ANSI_COLOR="0;31"
[2026-03-04 13:56:34] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-04 13:56:34] HOME_URL="https://www.centos.org/"
[2026-03-04 13:56:34] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-04 13:56:34] 
[2026-03-04 13:56:34] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-04 13:56:34] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-04 13:56:34] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-04 13:56:34] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-04 13:56:34] 
[2026-03-04 13:56:34] 2026-03-04 12:56:16,297 | INFO     | **************************************
[2026-03-04 13:56:34] 2026-03-04 12:56:16,801 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-04 13:56:34] 2026-03-04 12:56:16,819 | INFO     | sufficient remaining disk space (330742890496 B)
[2026-03-04 13:56:34] 2026-03-04 12:56:16,819 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-04 13:56:34] 2026-03-04 12:56:16,819 | INFO     | current server update state: UPDATING_FINAL
[2026-03-04 13:56:34] 2026-03-04 12:56:16,819 | INFO     | update_server=False
[2026-03-04 13:56:34] 2026-03-04 12:56:16,819 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-04 13:56:34] 2026-03-04 12:56:16,819 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-04 13:56:34] 2026-03-04 12:56:16,819 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-03-04 13:56:34] 2026-03-04 12:56:16,820 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-04 13:56:34] 2026-03-04 12:56:16,820 | INFO     | found 0 job(s) in 20 queues
[2026-03-04 13:56:34] 2026-03-04 12:56:16,820 | INFO     | aborting loop
[2026-03-04 13:56:34] 2026-03-04 12:56:16,820 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-04 13:56:34] 2026-03-04 12:56:16,820 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-04 13:56:34] 2026-03-04 12:56:17,409 | INFO     | all payload control threads have been joined
[2026-03-04 13:56:34] 2026-03-04 12:56:17,510 | INFO     | all job control threads have been joined
[2026-03-04 13:56:34] 2026-03-04 12:56:17,825 | INFO     | [job] retrieve thread has finished
[2026-03-04 13:56:34] 2026-03-04 12:56:17,825 | INFO     | [job] queue monitor thread has finished
[2026-03-04 13:56:34] 2026-03-04 12:56:17,826 | INFO     | [job] job monitor thread has finished
[2026-03-04 13:56:34] 2026-03-04 12:56:17,866 | INFO     | [payload] validate_pre thread has finished
[2026-03-04 13:56:34] 2026-03-04 12:56:17,868 | INFO     | all data control threads have been joined
[2026-03-04 13:56:34] 2026-03-04 12:56:18,015 | INFO     | [payload] execute_payloads thread has finished
[2026-03-04 13:56:34] 2026-03-04 12:56:18,019 | INFO     | [data] copytool_in thread has finished
[2026-03-04 13:56:34] 2026-03-04 12:56:18,067 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-04 13:56:34] 2026-03-04 12:56:18,321 | INFO     | [payload] failed_post thread has finished
[2026-03-04 13:56:34] 2026-03-04 12:56:18,415 | INFO     | [payload] control thread has finished
[2026-03-04 13:56:34] 2026-03-04 12:56:18,516 | INFO     | [job] control thread has finished
[2026-03-04 13:56:34] 2026-03-04 12:56:18,859 | INFO     | [payload] validate_post thread has finished
[2026-03-04 13:56:34] 2026-03-04 12:56:18,873 | INFO     | [data] control thread has finished
[2026-03-04 13:56:34] 2026-03-04 12:56:18,959 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-04 13:56:34] 2026-03-04 12:56:19,171 | INFO     | [job] validate thread has finished
[2026-03-04 13:56:34] 2026-03-04 12:56:19,295 | INFO     | [job] create_data_payload thread has finished
[2026-03-04 13:56:34] 2026-03-04 12:56:20,073 | INFO     | [data] copytool_out thread has finished
[2026-03-04 13:56:34] 2026-03-04 12:56:22,967 | INFO     | [data] queue_monitor thread has finished
[2026-03-04 13:56:34] 2026-03-04 12:56:23,466 | INFO     | [monitor] cgroup control has ended
[2026-03-04 13:56:34] 2026-03-04 12:56:27,638 | INFO     | job.realtimelogging is not enabled
[2026-03-04 13:56:34] 2026-03-04 12:56:28,643 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-04 13:56:34] 2026-03-04 12:56:29,217 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140032834336576)>', '<ExcThread(monitor, started 140032333555456)>']
[2026-03-04 13:56:34] 2026-03-04 12:56:29,890 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-04 13:56:34] 2026-03-04 12:56:29,890 | INFO     | [monitor] control thread has ended
[2026-03-04 13:56:34] 2026-03-04 12:56:34,219 | INFO     | all workflow threads have been joined
[2026-03-04 13:56:34] 2026-03-04 12:56:34,219 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-04 13:56:34] 2026-03-04 12:56:34,219 | INFO     | traces error code: 0
[2026-03-04 13:56:34] 2026-03-04 12:56:34,219 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-04 13:56:34] 2026-03-04 12:56:34,296 [wrapper] ==== pilot stdout END ====
[2026-03-04 13:56:34] 2026-03-04 12:56:34,300 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-04 13:56:34] 2026-03-04 12:56:34,304 [wrapper] pilotpid: 1557830
[2026-03-04 13:56:34] 2026-03-04 12:56:34,308 [wrapper] Pilot exit status: 0
[2026-03-04 13:56:34] 2026-03-04 12:56:34,320 [wrapper] pandaids: 7036205000
[2026-03-04 13:56:34] 2026-03-04 12:56:34,342 [wrapper] cleanup supervisor_pilot 1567555 1557831
[2026-03-04 13:56:34] 2026-03-04 12:56:34,346 [wrapper] Test setup, not cleaning
[2026-03-04 13:56:34] 2026-03-04 12:56:34,351 [wrapper] apfmon messages muted
[2026-03-04 13:56:34] 2026-03-04 12:56:34,355 [wrapper] ==== wrapper stdout END ====
[2026-03-04 13:56:34] 2026-03-04 12:56:34,359 [wrapper] ==== wrapper stderr END ====
[2026-03-04 13:56:34]  *** Error codes and diagnostics ***
[2026-03-04 13:56:34]     "exeErrorCode": 0,
[2026-03-04 13:56:34]     "exeErrorDiag": "",
[2026-03-04 13:56:34]     "pilotErrorCode": 0,
[2026-03-04 13:56:34]     "pilotErrorDiag": "",
[2026-03-04 13:56:34]  *** Listing of results directory ***
[2026-03-04 13:56:34] total 449352
[2026-03-04 13:56:34] -rw-r--r-- 1 boinc boinc    584627 Mar  3 05:44 pilot3.tar.gz
[2026-03-04 13:56:34] -rwx------ 1 boinc boinc     36322 Mar  3 06:01 runpilot2-wrapper.sh
[2026-03-04 13:56:34] -rw-r--r-- 1 boinc boinc      5111 Mar  3 06:03 queuedata.json
[2026-03-04 13:56:34] -rw-r--r-- 1 boinc boinc       100 Mar  4 12:31 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-04 13:56:34] -rwxr-xr-x 1 boinc boinc      7986 Mar  4 12:31 run_atlas
[2026-03-04 13:56:34] -rw-r--r-- 1 boinc boinc       105 Mar  4 12:31 job.xml
[2026-03-04 13:56:34] -rw-r--r-- 2 boinc boinc 255489017 Mar  4 12:31 EVNT.48459837._000001.pool.root.1
[2026-03-04 13:56:34] -rw-r--r-- 2 boinc boinc    597961 Mar  4 12:31 input.tar.gz
[2026-03-04 13:56:34] -rw-r--r-- 2 boinc boinc     15845 Mar  4 12:31 start_atlas.sh
[2026-03-04 13:56:34] drwxrwx--x 2 boinc boinc      4096 Mar  4 12:31 shared
[2026-03-04 13:56:34] -rw-r--r-- 1 boinc boinc         0 Mar  4 12:31 boinc_setup_complete
[2026-03-04 13:56:34] -rw-r--r-- 1 boinc boinc      6378 Mar  4 12:31 init_data.xml
[2026-03-04 13:56:34] -rw-r--r-- 1 boinc boinc         0 Mar  4 12:31 boinc_lockfile
[2026-03-04 13:56:34] -rw-r--r-- 1 boinc boinc      2612 Mar  4 12:31 pandaJob.out
[2026-03-04 13:56:34] -rw------- 1 boinc boinc    997352 Mar  4 12:31 agis_schedconf.cvmfs.json
[2026-03-04 13:56:34] -rw------- 1 boinc boinc   1516092 Mar  4 12:31 agis_ddmendpoints.agis.ALL.json
[2026-03-04 13:56:34] -rw------- 1 boinc boinc       428 Mar  4 12:31 workernode_map.json
[2026-03-04 13:56:34] drwx------ 5 boinc boinc      4096 Mar  4 12:31 pilot3
[2026-03-04 13:56:34] -rw------- 1 boinc boinc        95 Mar  4 13:55 pilot_heartbeat.json
[2026-03-04 13:56:34] -rw------- 1 boinc boinc 198695368 Mar  4 13:55 HITS.48851223._000013.pool.root.1
[2026-03-04 13:56:34] -rw-r--r-- 1 boinc boinc       529 Mar  4 13:55 boinc_task_state.xml
[2026-03-04 13:56:34] -rw------- 1 boinc boinc      1022 Mar  4 13:56 memory_monitor_summary.json
[2026-03-04 13:56:34] -rw------- 1 boinc boinc    270363 Mar  4 13:56 log.48851223._000013.job.log.tgz.1
[2026-03-04 13:56:34] -rw------- 1 boinc boinc      6298 Mar  4 13:56 heartbeat.json
[2026-03-04 13:56:34] -rw-r--r-- 1 boinc boinc      8192 Mar  4 13:56 boinc_mmap_file
[2026-03-04 13:56:34] -rw-r--r-- 1 boinc boinc        27 Mar  4 13:56 wrapper_checkpoint.txt
[2026-03-04 13:56:34] -rw------- 1 boinc boinc      4624 Mar  4 13:56 pilotlog.txt
[2026-03-04 13:56:34] -rw------- 1 boinc boinc    745195 Mar  4 13:56 log.48851223._000013.job.log.1
[2026-03-04 13:56:34] -rw------- 1 boinc boinc       357 Mar  4 13:56 output.list
[2026-03-04 13:56:34] -rw-r--r-- 1 boinc boinc       620 Mar  4 13:56 runtime_log
[2026-03-04 13:56:34] -rw------- 1 boinc boinc   1034240 Mar  4 13:56 result.tar.gz
[2026-03-04 13:56:34] -rw-r--r-- 1 boinc boinc      8901 Mar  4 13:56 runtime_log.err
[2026-03-04 13:56:34] -rw------- 1 boinc boinc       658 Mar  4 13:56 Gn5MDmM4WH9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmJrFLDmhq6BEo.diag
[2026-03-04 13:56:34] -rw-r--r-- 1 boinc boinc     10721 Mar  4 13:56 stderr.txt
[2026-03-04 13:56:34] HITS file was successfully produced:
[2026-03-04 13:56:34] -rw------- 1 boinc boinc 198695368 Mar  4 13:55 shared/HITS.pool.root.1
[2026-03-04 13:56:34]  *** Contents of shared directory: ***
[2026-03-04 13:56:34] total 445160
[2026-03-04 13:56:34] -rw-r--r-- 2 boinc boinc 255489017 Mar  4 12:31 ATLAS.root_0
[2026-03-04 13:56:34] -rw-r--r-- 2 boinc boinc    597961 Mar  4 12:31 input.tar.gz
[2026-03-04 13:56:34] -rw-r--r-- 2 boinc boinc     15845 Mar  4 12:31 start_atlas.sh
[2026-03-04 13:56:34] -rw------- 1 boinc boinc 198695368 Mar  4 13:55 HITS.pool.root.1
[2026-03-04 13:56:34] -rw------- 1 boinc boinc   1034240 Mar  4 13:56 result.tar.gz
13:56:35 (1553710): run_atlas exited; CPU time 19315.910685
13:56:35 (1553710): called boinc_finish(0)

</stderr_txt>
]]>

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