Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
10:01:01 (1602932): wrapper (7.7.26015): starting
10:01:01 (1602932): wrapper: running run_atlas (--nthreads 4)
[2026-03-04 10:01:01] Arguments: --nthreads 4
[2026-03-04 10:01:01] Threads: 4
[2026-03-04 10:01:01] Checking for CVMFS
[2026-03-04 10:01:01] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-04 10:01:01] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-04 10:01:01] Running cvmfs_config stat atlas.cern.ch
[2026-03-04 10:01:02] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-04 10:01:02] 2.9.2.0 56696 9705 101572 156875 0 50 25739126 36864000 0 130560 0 4287410 99.983 367091 15144 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-04 10:01:02] CVMFS is ok
[2026-03-04 10:01:02] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-04 10:01:02] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-04 10:01:02] Further information can be found at the LHC@home message board.
[2026-03-04 10:01:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-04 10:01:02] Checking for apptainer binary...
[2026-03-04 10:01:02] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-04 10:01:02] Running /usr/bin/apptainer --version
[2026-03-04 10:01:02] apptainer version 1.4.1-1.1
[2026-03-04 10:01:02] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-04 10:01:02] thA381
[2026-03-04 10:01:02] apptainer works
[2026-03-04 10:01:02] Set ATHENA_PROC_NUMBER=4
[2026-03-04 10:01:02] Set ATHENA_CORE_NUMBER=4
[2026-03-04 10:01:02] Starting ATLAS job with PandaID=7036586941
[2026-03-04 10:01:02] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-04 11:07:27]  *** The last 200 lines of the pilot log: ***
[2026-03-04 11:07:27] 2026-03-04 10:06:55,883 | INFO     | collected zombie processes
[2026-03-04 11:07:27] 2026-03-04 10:06:55,883 | INFO     | will attempt to kill all subprocesses of pid=1611566
[2026-03-04 11:07:27] 2026-03-04 10:06:55,926 | INFO     | process IDs to be killed: [1611566] (in reverse order)
[2026-03-04 11:07:27] 2026-03-04 10:06:55,960 | WARNING  | found no corresponding commands to process id(s)
[2026-03-04 11:07:27] 2026-03-04 10:06:55,960 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-04 11:07:27] 2026-03-04 10:06:55,961 | INFO     | did not find any defunct processes belonging to 1611566
[2026-03-04 11:07:27] 2026-03-04 10:06:55,962 | INFO     | did not find any defunct processes belonging to 1611566
[2026-03-04 11:07:27] 2026-03-04 10:06:55,963 | INFO     | ready for new job
[2026-03-04 11:07:27] 2026-03-04 10:06:55,963 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-04 11:07:27] 2026-03-04 10:06:55,963 | INFO     | **************************************
[2026-03-04 11:07:27] 2026-03-04 10:06:55,963 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-04 11:07:27] 2026-03-04 10:06:55,963 | INFO     | **************************************
[2026-03-04 11:07:27] 2026-03-04 10:06:55,963 | INFO     | 
[2026-03-04 11:07:27] 2026-03-04 10:06:55,964 | INFO     | architecture information:
[2026-03-04 11:07:27] 2026-03-04 10:06:55,964 | INFO     | executing command: cat /etc/os-release
[2026-03-04 11:07:27] 2026-03-04 10:06:55,979 | INFO     | cat /etc/os-release:
[2026-03-04 11:07:27] NAME="CentOS Linux"
[2026-03-04 11:07:27] VERSION="7 (Core)"
[2026-03-04 11:07:27] ID="centos"
[2026-03-04 11:07:27] ID_LIKE="rhel fedora"
[2026-03-04 11:07:27] VERSION_ID="7"
[2026-03-04 11:07:27] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-04 11:07:27] ANSI_COLOR="0;31"
[2026-03-04 11:07:27] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-04 11:07:27] HOME_URL="https://www.centos.org/"
[2026-03-04 11:07:27] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-04 11:07:27] 
[2026-03-04 11:07:27] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-04 11:07:27] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-04 11:07:27] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-04 11:07:27] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-04 11:07:27] 
[2026-03-04 11:07:27] 2026-03-04 10:06:55,979 | INFO     | **************************************
[2026-03-04 11:07:27] 2026-03-04 10:06:56,482 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-04 11:07:27] 2026-03-04 10:06:56,501 | INFO     | sufficient remaining disk space (233018753024 B)
[2026-03-04 11:07:27] 2026-03-04 10:06:56,501 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-04 11:07:27] 2026-03-04 10:06:56,501 | INFO     | current server update state: UPDATING_FINAL
[2026-03-04 11:07:27] 2026-03-04 10:06:56,501 | INFO     | update_server=False
[2026-03-04 11:07:27] 2026-03-04 10:06:56,501 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-04 11:07:27] 2026-03-04 10:06:56,505 | INFO     | all job control threads have been joined
[2026-03-04 11:07:27] 2026-03-04 10:06:56,562 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-04 11:07:27] 2026-03-04 10:06:56,815 | INFO     | all data control threads have been joined
[2026-03-04 11:07:27] 2026-03-04 10:06:57,194 | INFO     | all payload control threads have been joined
[2026-03-04 11:07:27] 2026-03-04 10:06:57,459 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-04 11:07:27] 2026-03-04 10:06:57,460 | INFO     | aborting loop
[2026-03-04 11:07:27] 2026-03-04 10:06:57,506 | INFO     | [job] retrieve thread has finished
[2026-03-04 11:07:27] 2026-03-04 10:06:57,507 | INFO     | [job] control thread has finished
[2026-03-04 11:07:27] 2026-03-04 10:06:57,530 | INFO     | [job] create_data_payload thread has finished
[2026-03-04 11:07:27] 2026-03-04 10:06:57,577 | INFO     | [payload] failed_post thread has finished
[2026-03-04 11:07:27] 2026-03-04 10:06:57,623 | INFO     | [payload] validate_pre thread has finished
[2026-03-04 11:07:27] 2026-03-04 10:06:57,732 | INFO     | [data] copytool_in thread has finished
[2026-03-04 11:07:27] 2026-03-04 10:06:57,818 | INFO     | [data] control thread has finished
[2026-03-04 11:07:27] 2026-03-04 10:06:58,095 | INFO     | [payload] validate_post thread has finished
[2026-03-04 11:07:27] 2026-03-04 10:06:58,200 | INFO     | [payload] control thread has finished
[2026-03-04 11:07:27] 2026-03-04 10:06:58,465 | INFO     | [job] job monitor thread has finished
[2026-03-04 11:07:27] 2026-03-04 10:06:58,488 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-04 11:07:27] 2026-03-04 10:06:58,568 | INFO     | [data] copytool_out thread has finished
[2026-03-04 11:07:27] 2026-03-04 10:06:58,715 | INFO     | [payload] execute_payloads thread has finished
[2026-03-04 11:07:27] 2026-03-04 10:06:58,912 | INFO     | [job] validate thread has finished
[2026-03-04 11:07:27] 2026-03-04 10:06:59,447 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-04 11:07:27] 2026-03-04 10:07:00,452 | INFO     | [job] queue monitor thread has finished
[2026-03-04 11:07:27] 2026-03-04 10:07:02,495 | INFO     | [data] queue_monitor thread has finished
[2026-03-04 11:07:27] 2026-03-04 10:07:06,706 | INFO     | job.realtimelogging is not enabled
[2026-03-04 11:07:27] 2026-03-04 10:07:07,712 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-04 11:07:27] 2026-03-04 10:07:19,808 | INFO     | [monitor] cgroup control has ended
[2026-03-04 11:07:27] 2026-03-04 10:07:19,897 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140125893752640)>', '<ExcThread(monitor, started 140125153507072)>']
[2026-03-04 11:07:27] 2026-03-04 10:07:24,922 | INFO     | all workflow threads have been joined
[2026-03-04 11:07:27] 2026-03-04 10:07:24,923 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-04 11:07:27] 2026-03-04 10:07:24,924 | INFO     | traces error code: 0
[2026-03-04 11:07:27] 2026-03-04 10:07:24,924 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-04 11:07:27] 2026-03-04 10:07:27,231 | INFO     | PID=1607053 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-04 11:07:27] 2026-03-04 10:07:27,231 | INFO     | found 0 job(s) in 20 queues
[2026-03-04 11:07:27] 2026-03-04 10:07:27,231 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-04 11:07:27] 2026-03-04 10:07:27,231 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-04 11:07:27] 2026-03-04 10:07:27,231 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-04 11:07:27] 2026-03-04 10:07:27,231 | INFO     | [monitor] control thread has ended
[2026-03-04 11:07:27] 2026-03-04 10:07:27,306 [wrapper] ==== pilot stdout END ====
[2026-03-04 11:07:27] 2026-03-04 10:07:27,310 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-04 11:07:27] 2026-03-04 10:07:27,315 [wrapper] pilotpid: 1607053
[2026-03-04 11:07:27] 2026-03-04 10:07:27,319 [wrapper] Pilot exit status: 0
[2026-03-04 11:07:27] 2026-03-04 10:07:27,332 [wrapper] pandaids: 7036586941
[2026-03-04 11:07:27] 2026-03-04 10:07:27,354 [wrapper] cleanup supervisor_pilot 1616712 1607054
[2026-03-04 11:07:27] 2026-03-04 10:07:27,358 [wrapper] Test setup, not cleaning
[2026-03-04 11:07:27] 2026-03-04 10:07:27,362 [wrapper] apfmon messages muted
[2026-03-04 11:07:27] 2026-03-04 10:07:27,366 [wrapper] ==== wrapper stdout END ====
[2026-03-04 11:07:27] 2026-03-04 10:07:27,370 [wrapper] ==== wrapper stderr END ====
[2026-03-04 11:07:27]  *** Error codes and diagnostics ***
[2026-03-04 11:07:27]     "exeErrorCode": 0,
[2026-03-04 11:07:27]     "exeErrorDiag": "",
[2026-03-04 11:07:27]     "pilotErrorCode": 0,
[2026-03-04 11:07:27]     "pilotErrorDiag": "",
[2026-03-04 11:07:27]  *** Listing of results directory ***
[2026-03-04 11:07:27] total 421992
[2026-03-04 11:07:27] -rw-r--r-- 1 boinc boinc    584627 Mar  3 20:48 pilot3.tar.gz
[2026-03-04 11:07:27] -rw-r--r-- 1 boinc boinc      5111 Mar  3 21:48 queuedata.json
[2026-03-04 11:07:27] -rwx------ 1 boinc boinc     36322 Mar  3 21:49 runpilot2-wrapper.sh
[2026-03-04 11:07:27] -rw-r--r-- 1 boinc boinc       100 Mar  4 10:01 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-04 11:07:27] -rwxr-xr-x 1 boinc boinc      7986 Mar  4 10:01 run_atlas
[2026-03-04 11:07:27] -rw-r--r-- 1 boinc boinc       105 Mar  4 10:01 job.xml
[2026-03-04 11:07:27] -rw-r--r-- 2 boinc boinc 257068986 Mar  4 10:01 EVNT.48450486._000002.pool.root.1
[2026-03-04 11:07:27] drwxrwx--x 2 boinc boinc      4096 Mar  4 10:01 shared
[2026-03-04 11:07:27] -rw-r--r-- 2 boinc boinc    597987 Mar  4 10:01 input.tar.gz
[2026-03-04 11:07:27] -rw-r--r-- 2 boinc boinc     15845 Mar  4 10:01 start_atlas.sh
[2026-03-04 11:07:27] -rw-r--r-- 1 boinc boinc         0 Mar  4 10:01 boinc_setup_complete
[2026-03-04 11:07:27] -rw-r--r-- 1 boinc boinc      6377 Mar  4 10:01 init_data.xml
[2026-03-04 11:07:27] -rw-r--r-- 1 boinc boinc         0 Mar  4 10:01 boinc_lockfile
[2026-03-04 11:07:27] -rw-r--r-- 1 boinc boinc      2617 Mar  4 10:01 pandaJob.out
[2026-03-04 11:07:27] -rw------- 1 boinc boinc    997384 Mar  4 10:01 agis_schedconf.cvmfs.json
[2026-03-04 11:07:27] -rw------- 1 boinc boinc   1516092 Mar  4 10:01 agis_ddmendpoints.agis.ALL.json
[2026-03-04 11:07:27] -rw------- 1 boinc boinc       427 Mar  4 10:01 workernode_map.json
[2026-03-04 11:07:27] drwx------ 5 boinc boinc      4096 Mar  4 10:01 pilot3
[2026-03-04 11:07:27] -rw------- 1 boinc boinc        95 Mar  4 11:06 pilot_heartbeat.json
[2026-03-04 11:07:27] -rw------- 1 boinc boinc 169472882 Mar  4 11:06 HITS.48843226._000079.pool.root.1
[2026-03-04 11:07:27] -rw-r--r-- 1 boinc boinc       529 Mar  4 11:06 boinc_task_state.xml
[2026-03-04 11:07:27] -rw------- 1 boinc boinc      1033 Mar  4 11:06 memory_monitor_summary.json
[2026-03-04 11:07:27] -rw------- 1 boinc boinc    241729 Mar  4 11:06 log.48843226._000079.job.log.tgz.1
[2026-03-04 11:07:27] -rw------- 1 boinc boinc      6311 Mar  4 11:06 heartbeat.json
[2026-03-04 11:07:27] -rw-r--r-- 1 boinc boinc      8192 Mar  4 11:06 boinc_mmap_file
[2026-03-04 11:07:27] -rw-r--r-- 1 boinc boinc        27 Mar  4 11:06 wrapper_checkpoint.txt
[2026-03-04 11:07:27] -rw------- 1 boinc boinc       747 Mar  4 11:07 pilotlog.txt
[2026-03-04 11:07:27] -rw------- 1 boinc boinc    589928 Mar  4 11:07 log.48843226._000079.job.log.1
[2026-03-04 11:07:27] -rw------- 1 boinc boinc       357 Mar  4 11:07 output.list
[2026-03-04 11:07:27] -rw-r--r-- 1 boinc boinc       620 Mar  4 11:07 runtime_log
[2026-03-04 11:07:27] -rw------- 1 boinc boinc    849920 Mar  4 11:07 result.tar.gz
[2026-03-04 11:07:27] -rw-r--r-- 1 boinc boinc      8896 Mar  4 11:07 runtime_log.err
[2026-03-04 11:07:27] -rw------- 1 boinc boinc       657 Mar  4 11:07 NG7KDm9qlH9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDm2ZHLDm3I5uLm.diag
[2026-03-04 11:07:27] -rw-r--r-- 1 boinc boinc     10372 Mar  4 11:07 stderr.txt
[2026-03-04 11:07:27] HITS file was successfully produced:
[2026-03-04 11:07:27] -rw------- 1 boinc boinc 169472882 Mar  4 11:06 shared/HITS.pool.root.1
[2026-03-04 11:07:27]  *** Contents of shared directory: ***
[2026-03-04 11:07:27] total 417980
[2026-03-04 11:07:27] -rw-r--r-- 2 boinc boinc 257068986 Mar  4 10:01 ATLAS.root_0
[2026-03-04 11:07:27] -rw-r--r-- 2 boinc boinc    597987 Mar  4 10:01 input.tar.gz
[2026-03-04 11:07:27] -rw-r--r-- 2 boinc boinc     15845 Mar  4 10:01 start_atlas.sh
[2026-03-04 11:07:27] -rw------- 1 boinc boinc 169472882 Mar  4 11:06 HITS.pool.root.1
[2026-03-04 11:07:27] -rw------- 1 boinc boinc    849920 Mar  4 11:07 result.tar.gz
11:07:29 (1602932): run_atlas exited; CPU time 14787.285668
11:07:29 (1602932): called boinc_finish(0)

</stderr_txt>
]]>

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