Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
2026-03-04 09:28:53 (21580): vboxwrapper version 26210
2026-03-04 09:28:53 (21580): BOINC client version: 8.2.4
2026-03-04 09:28:54 (21580): Detected: VirtualBox VboxManage Interface (Version: 7.1.12)
2026-03-04 09:28:54 (21580): Successfully copied 'init_data.xml' to the shared directory.
2026-03-04 09:28:55 (21580): Create VM. (boinc_f1e87aece22b7a8e, slot#3)
2026-03-04 09:28:56 (21580): Setting Memory Size for VM. (4300MB)
2026-03-04 09:28:56 (21580): Setting CPU Count for VM. (3)
2026-03-04 09:28:56 (21580): Setting Chipset Options for VM.
2026-03-04 09:28:57 (21580): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2026-03-04 09:28:57 (21580): Setting Boot Options for VM.
2026-03-04 09:28:58 (21580): Setting Network Configuration for NAT. (Driver: virtio)
2026-03-04 09:28:58 (21580): Enabling VM Network Access.
2026-03-04 09:28:58 (21580): Disabling USB Support for VM.
2026-03-04 09:28:58 (21580): Disabling COM Port Support for VM.
2026-03-04 09:28:59 (21580): Disabling LPT Port Support for VM.
2026-03-04 09:28:59 (21580): Disabling Audio Support for VM.
2026-03-04 09:28:59 (21580): Disabling Clipboard Support for VM.
2026-03-04 09:29:00 (21580): Disabling Drag and Drop Support for VM.
2026-03-04 09:29:00 (21580): Adding storage controller(s) to VM.
2026-03-04 09:29:00 (21580): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2026-03-04 09:29:02 (21580): Adding VirtualBox Guest Additions to VM.
2026-03-04 09:29:03 (21580): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2026-03-04 09:29:03 (21580): forwarding host port 63766 to guest port 80
2026-03-04 09:29:03 (21580): Enabling remote desktop for VM.
2026-03-04 09:29:04 (21580): Required extension pack not installed, remote desktop not enabled.
2026-03-04 09:29:04 (21580): Enabling shared directory for VM.
2026-03-04 09:29:04 (21580): Starting VM using VBoxManage interface. (boinc_f1e87aece22b7a8e, slot#3)
2026-03-04 09:29:09 (21580): Successfully started VM. (PID = '9608')
2026-03-04 09:29:09 (21580): Reporting VM Process ID to BOINC.
2026-03-04 09:29:09 (21580): Guest Log: BIOS: VirtualBox 7.1.12
2026-03-04 09:29:09 (21580): Guest Log: CPUID EDX: 0x178bfbff
2026-03-04 09:29:09 (21580): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2026-03-04 09:29:09 (21580): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2026-03-04 09:29:09 (21580): VM state change detected. (old = 'poweredoff', new = 'running')
2026-03-04 09:29:09 (21580): Detected: Web Application Enabled (http://localhost:63766)
2026-03-04 09:29:09 (21580): Preference change detected
2026-03-04 09:29:09 (21580): Setting CPU throttle for VM. (100%)
2026-03-04 09:29:09 (21580): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 180 seconds) or (Vbox_job.xml: 900 seconds))
2026-03-04 09:29:11 (21580): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2026-03-04 09:29:11 (21580): Guest Log: BIOS: Booting from Hard Disk...
2026-03-04 09:29:14 (21580): Guest Log: BIOS: KBD: unsupported int 16h function 03
2026-03-04 09:29:14 (21580): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2026-03-04 09:29:14 (21580): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2026-03-04 09:29:14 (21580): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2026-03-04 09:29:14 (21580): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2026-03-04 09:29:14 (21580): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2026-03-04 09:29:14 (21580): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2026-03-04 09:29:14 (21580): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2026-03-04 09:29:14 (21580): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2026-03-04 09:29:14 (21580): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2026-03-04 09:29:14 (21580): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2026-03-04 09:29:14 (21580): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2026-03-04 09:29:14 (21580): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2026-03-04 09:29:14 (21580): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2026-03-04 09:29:14 (21580): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2026-03-04 09:29:14 (21580): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2026-03-04 09:29:14 (21580): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2026-03-04 09:29:14 (21580): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2026-03-04 09:29:14 (21580): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2026-03-04 09:29:14 (21580): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2026-03-04 09:29:14 (21580): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2026-03-04 09:29:14 (21580): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2026-03-04 09:29:14 (21580): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2026-03-04 09:29:14 (21580): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2026-03-04 09:29:14 (21580): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2026-03-04 09:29:14 (21580): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2026-03-04 09:29:14 (21580): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2026-03-04 09:29:14 (21580): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2026-03-04 09:29:14 (21580): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2026-03-04 09:29:14 (21580): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2026-03-04 09:29:14 (21580): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2026-03-04 09:29:14 (21580): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2026-03-04 09:29:20 (21580): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2026-03-04 09:29:20 (21580): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2026-03-04 09:29:27 (21580): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2026-03-04 09:29:27 (21580): Guest Log: 00:00:00.000069 main     Log opened 2026-03-04T09:29:25.371725000Z
2026-03-04 09:29:27 (21580): Guest Log: 00:00:00.000197 main     OS Product: Linux
2026-03-04 09:29:27 (21580): Guest Log: 00:00:00.000235 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2026-03-04 09:29:27 (21580): Guest Log: 00:00:00.000265 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2026-03-04 09:29:27 (21580): Guest Log: 00:00:00.000293 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2026-03-04 09:29:27 (21580): Guest Log: 00:00:00.000293 main     Process ID: 1298
2026-03-04 09:29:27 (21580): Guest Log: 00:00:00.000294 main     Package type: LINUX_64BITS_GENERIC
2026-03-04 09:29:27 (21580): Guest Log: 00:00:00.000761 main     5.2.32 r132073 started. Verbose level = 0
2026-03-04 09:29:27 (21580): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2026-03-04 09:29:27 (21580): Guest Log: [INFO] Mounting shared directory
2026-03-04 09:29:27 (21580): Guest Log: [INFO] Checking for init_data.xml
2026-03-04 09:29:31 (21580): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2026-03-04 09:29:31 (21580): Guest Log: [INFO] Detected branch: prod
2026-03-04 09:29:31 (21580): Guest Log: This is the prod version of the ATLAS job wrapper
2026-03-04 09:29:31 (21580): Guest Log: Copying input files
2026-03-04 09:29:32 (21580): Guest Log: Copied input files into RunAtlas.
2026-03-04 09:29:32 (21580): Guest Log: This VM did not configure a local http proxy via BOINC.
2026-03-04 09:29:32 (21580): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2026-03-04 09:29:32 (21580): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2026-03-04 09:29:32 (21580): Guest Log: Further information can be found at the LHC@home message board.
2026-03-04 09:29:40 (21580): Guest Log: Running cvmfs_config stat atlas.cern.ch
2026-03-04 09:29:40 (21580): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2026-03-04 09:29:40 (21580): Guest Log: 2.6.3.0 1573 0 30112 156876 4 1 3117743 4096001 0 65024 0 0 n/a 0 0 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2026-03-04 09:29:42 (21580): Guest Log: copied the webapp to /var/www
2026-03-04 09:29:42 (21580): Guest Log: ATHENA_PROC_NUMBER=3
2026-03-04 09:29:42 (21580): Guest Log: ATHENA_CORE_NUMBER=3
2026-03-04 09:29:42 (21580): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2026-03-04 09:29:42 (21580): Guest Log:  *** Starting ATLAS job. (PandaID=7036370109 taskID=48838577) ***
2026-03-04 10:29:45 (21580): VM state change detected. (old = 'running', new = 'paused')
2026-03-04 11:28:18 (21580): VM state change detected. (old = 'paused', new = 'running')
2026-03-04 11:28:23 (21580): Guest Log: 01:00:22.621513 timesync vgsvcTimeSyncWorker: Radical host time change: 3 514 971 000 000ns (HostNow=1 772 623 646 655 000 000 ns HostLast=1 772 620 131 684 000 000 ns)
2026-03-04 11:28:33 (21580): Guest Log: 01:00:32.624733 timesync vgsvcTimeSyncWorker: Radical guest time change: 3 468 836 654 000ns (GuestNow=1 772 623 656 744 013 000 ns GuestLast=1 772 620 187 907 359 000 ns fSetTimeLastLoop=true )
2026-03-04 12:07:45 (21580): Status Report: Elapsed Time: '6000.000000'
2026-03-04 12:07:45 (21580): Status Report: CPU Time: '16693.796875'
2026-03-04 13:27:01 (21580): Guest Log:  *** Job finished ***
2026-03-04 13:27:01 (21580): Guest Log:  *** The last 20 lines of the pilot log: ***
2026-03-04 13:27:01 (21580): Guest Log: 2026-03-04 13:26:01,143 | INFO     | end of generic workflow (traces error code: 0)
2026-03-04 13:27:01 (21580): Guest Log: 2026-03-04 13:26:01,143 | INFO     | traces error code: 0
2026-03-04 13:27:01 (21580): Guest Log: 2026-03-04 13:26:01,143 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2026-03-04 13:27:01 (21580): Guest Log: 2026-03-04 13:26:05,884 | INFO     | PID=5959 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE -z -t
2026-03-04 13:27:01 (21580): Guest Log: 2026-03-04 13:26:05,884 | INFO     | found 0 job(s) in 20 queues
2026-03-04 13:27:01 (21580): Guest Log: 2026-03-04 13:26:05,884 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2026-03-04 13:27:01 (21580): Guest Log: 2026-03-04 13:26:05,884 | WARNING  | will wait for a maximum of 300 s for threads to finish
2026-03-04 13:27:01 (21580): Guest Log: 2026-03-04 13:26:05,884 | WARNING  | job_aborted has been set - aborting pilot monitoring
2026-03-04 13:27:01 (21580): Guest Log: 2026-03-04 13:26:05,884 | CRITICAL | thread 'MainThread' is not alive
2026-03-04 13:27:01 (21580): Guest Log: 2026-03-04 13:26:05,884 | INFO     | [monitor] control thread has ended
2026-03-04 13:27:01 (21580): Guest Log: 2026-03-04 13:26:06,615 [wrapper] ==== pilot stdout END ====
2026-03-04 13:27:01 (21580): Guest Log: 2026-03-04 13:26:06,618 [wrapper] ==== wrapper stdout RESUME ====
2026-03-04 13:27:01 (21580): Guest Log: 2026-03-04 13:26:06,620 [wrapper] pilotpid: 5959
2026-03-04 13:27:01 (21580): Guest Log: 2026-03-04 13:26:06,622 [wrapper] Pilot exit status: 0
2026-03-04 13:27:01 (21580): Guest Log: 2026-03-04 13:26:06,721 [wrapper] pandaids: 7036370109
2026-03-04 13:27:01 (21580): Guest Log: 2026-03-04 13:26:06,737 [wrapper] cleanup supervisor_pilot 27041 5960
2026-03-04 13:27:01 (21580): Guest Log: 2026-03-04 13:26:06,740 [wrapper] Test setup, not cleaning
2026-03-04 13:27:01 (21580): Guest Log: 2026-03-04 13:26:06,743 [wrapper] apfmon messages muted
2026-03-04 13:27:01 (21580): Guest Log: 2026-03-04 13:26:06,746 [wrapper] ==== wrapper stdout END ====
2026-03-04 13:27:01 (21580): Guest Log: 2026-03-04 13:26:06,749 [wrapper] ==== wrapper stderr END ====
2026-03-04 13:27:01 (21580): Guest Log:  *** Error codes and diagnostics ***
2026-03-04 13:27:01 (21580): Guest Log:     "exeErrorCode": 0,
2026-03-04 13:27:01 (21580): Guest Log:     "exeErrorDiag": "",
2026-03-04 13:27:01 (21580): Guest Log:     "pilotErrorCode": 0,
2026-03-04 13:27:01 (21580): Guest Log:     "pilotErrorDiag": "",
2026-03-04 13:27:01 (21580): Guest Log:  *** Listing of results directory ***
2026-03-04 13:27:01 (21580): Guest Log: total 236440
2026-03-04 13:27:01 (21580): Guest Log: -rw-r--r--. 1 atlas atlas    584627 Mar  3 17:25 pilot3.tar.gz
2026-03-04 13:27:01 (21580): Guest Log: -rwx------. 1 atlas atlas     36322 Mar  3 17:25 runpilot2-wrapper.sh
2026-03-04 13:27:01 (21580): Guest Log: -rw-r--r--. 1 atlas atlas      5111 Mar  3 17:25 queuedata.json
2026-03-04 13:27:01 (21580): Guest Log: -rwxr-xr-x. 1 atlas atlas      8736 Mar  4 09:29 init_data.xml
2026-03-04 13:27:01 (21580): Guest Log: -rwxr-xr-x. 1 atlas atlas    597973 Mar  4 09:29 input.tar.gz
2026-03-04 13:27:01 (21580): Guest Log: -rwxr-xr-x. 1 atlas atlas     15845 Mar  4 09:29 start_atlas.sh
2026-03-04 13:27:01 (21580): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Mar  4 09:29 EVNT.48220197._000155.pool.root.1 -> /data/./ATLAS.root_0
2026-03-04 13:27:01 (21580): Guest Log: -rw-r--r--. 1 atlas atlas      2567 Mar  4 09:29 pandaJob.out
2026-03-04 13:27:01 (21580): Guest Log: -rw-------. 1 atlas atlas    997376 Mar  4 09:30 agis_schedconf.cvmfs.json
2026-03-04 13:27:01 (21580): Guest Log: -rw-------. 1 atlas atlas       401 Mar  4 09:30 workernode_map.json
2026-03-04 13:27:01 (21580): Guest Log: drwx------. 5 atlas atlas      4096 Mar  4 09:31 pilot3
2026-03-04 13:27:01 (21580): Guest Log: -rw-------. 1 atlas atlas 234582651 Mar  4 13:25 HITS.48838577._003980.pool.root.1
2026-03-04 13:27:01 (21580): Guest Log: -rw-------. 1 atlas atlas        97 Mar  4 13:25 pilot_heartbeat.json
2026-03-04 13:27:01 (21580): Guest Log: -rw-------. 1 atlas atlas      1025 Mar  4 13:25 memory_monitor_summary.json
2026-03-04 13:27:01 (21580): Guest Log: -rw-------. 1 atlas atlas   1516092 Mar  4 13:25 agis_ddmendpoints.agis.ALL.json
2026-03-04 13:27:01 (21580): Guest Log: -rw-------. 1 atlas atlas    339328 Mar  4 13:25 log.48838577._003980.job.log.tgz.1
2026-03-04 13:27:01 (21580): Guest Log: -rw-------. 1 atlas atlas      6283 Mar  4 13:25 heartbeat.json
2026-03-04 13:27:01 (21580): Guest Log: -rw-------. 1 atlas atlas       814 Mar  4 13:26 pilotlog.txt
2026-03-04 13:27:01 (21580): Guest Log: -rw-------. 1 atlas atlas   1495396 Mar  4 13:26 log.48838577._003980.job.log.1
2026-03-04 13:27:01 (21580): Guest Log: -rw-------. 1 atlas atlas       357 Mar  4 13:26 output.list
2026-03-04 13:27:01 (21580): Guest Log: -rw-r--r--. 1 atlas atlas       620 Mar  4 13:26 runtime_log
2026-03-04 13:27:01 (21580): Guest Log: -rw-------. 1 atlas atlas   1853440 Mar  4 13:26 result.tar.gz
2026-03-04 13:27:01 (21580): Guest Log: -rw-------. 1 atlas atlas       669 Mar  4 13:26 Rv4MDmHgiH9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmoCHLDmm8kyLn.diag
2026-03-04 13:27:01 (21580): Guest Log: -rw-r--r--. 1 atlas atlas      8781 Mar  4 13:26 runtime_log.err
2026-03-04 13:27:01 (21580): Guest Log: Looking for outputfile HITS.48838577._003980.pool.root.1
2026-03-04 13:27:01 (21580): Guest Log: HITS file was successfully produced
2026-03-04 13:27:01 (21580): Guest Log: -rw-------. 1 atlas atlas 234582651 Mar  4 13:25 /home/atlas/RunAtlas/HITS.48838577._003980.pool.root.1
2026-03-04 13:27:01 (21580): Guest Log: Successfully finished the ATLAS job!
2026-03-04 13:27:01 (21580): Guest Log: Copying the results back to the shared directory!
2026-03-04 13:27:02 (21580): Guest Log:  *** Contents of shared directory: ***
2026-03-04 13:27:02 (21580): Guest Log: total 516444
2026-03-04 13:27:02 (21580): Guest Log: -rwxrwxrwx. 1 root root 291769629 Mar  4 09:28 ATLAS.root_0
2026-03-04 13:27:02 (21580): Guest Log: -rwxrwxrwx. 1 root root 234582651 Mar  4  2026 HITS.pool.root.1
2026-03-04 13:27:02 (21580): Guest Log: -rwxrwxrwx. 1 root root      8736 Mar  4 09:28 init_data.xml
2026-03-04 13:27:02 (21580): Guest Log: -rwxrwxrwx. 1 root root    597973 Mar  3 20:34 input.tar.gz
2026-03-04 13:27:02 (21580): Guest Log: -rwxrwxrwx. 1 root root   1853440 Mar  4  2026 result.tar.gz
2026-03-04 13:27:02 (21580): Guest Log: -rwxrwxrwx. 1 root root     15845 Mar  3 20:34 start_atlas.sh
2026-03-04 13:27:02 (21580): Guest Log:  *** Success! Shutting down the machine. ***
2026-03-04 13:27:02 (21580): VM Completion File Detected.
2026-03-04 13:27:02 (21580): Powering off VM.
2026-03-04 13:27:03 (21580): Successfully stopped VM.
2026-03-04 13:27:03 (21580): Deregistering VM. (boinc_f1e87aece22b7a8e, slot#3)
2026-03-04 13:27:03 (21580): Removing network bandwidth throttle group from VM.
2026-03-04 13:27:03 (21580): Removing VM from VirtualBox.
2026-03-04 13:27:08 (21580): called boinc_finish(0)

</stderr_txt>
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