Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
13:31:36 (1412671): wrapper (7.7.26015): starting
13:31:36 (1412671): wrapper: running run_atlas (--nthreads 12)
[2026-03-03 13:31:36] Arguments: --nthreads 12
[2026-03-03 13:31:36] Threads: 12
[2026-03-03 13:31:36] Checking for CVMFS
[2026-03-03 13:31:36] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-03 13:31:37] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-03 13:31:37] Running cvmfs_config stat atlas.cern.ch
[2026-03-03 13:31:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-03 13:31:38] 2.11.5.0 2445133 168477 358860 156857 3 297 38920596 45568001 16578 130560 0 1492423259 99.809 851239218 24631 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.163:3129 1
[2026-03-03 13:31:38] CVMFS is ok
[2026-03-03 13:31:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-03 13:31:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-03 13:31:38] Further information can be found at the LHC@home message board.
[2026-03-03 13:31:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-03 13:31:38] Checking for apptainer binary...
[2026-03-03 13:31:38] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-03 13:31:38] Running /usr/bin/apptainer --version
[2026-03-03 13:31:38] apptainer version 1.4.1-1.el9
[2026-03-03 13:31:38] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-03 13:31:39] wns0048.triumf.lcg
[2026-03-03 13:31:39] apptainer works
[2026-03-03 13:31:39] Set ATHENA_PROC_NUMBER=12
[2026-03-03 13:31:39] Set ATHENA_CORE_NUMBER=12
[2026-03-03 13:31:39] Starting ATLAS job with PandaID=7036557494
[2026-03-03 13:31:39] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-03 13:37:01]  *** The last 200 lines of the pilot log: ***
[2026-03-03 13:37:01] 2026-03-03 21:36:25,563 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-03 13:37:01] 2026-03-03 21:36:25,563 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-03 13:37:01] 2026-03-03 21:36:25,564 | WARNING  | wrong length of table data, x=[1772573633.0], y=[1620.0] (must be same and length>=4)
[2026-03-03 13:37:01] 2026-03-03 21:36:25,564 | INFO     | could have reported an average CPU frequency of 2550 MHz (4 samples)
[2026-03-03 13:37:01] 2026-03-03 21:36:25,564 | INFO     | ..............................
[2026-03-03 13:37:01] 2026-03-03 21:36:25,564 | INFO     | . Timing measurements:
[2026-03-03 13:37:01] 2026-03-03 21:36:25,564 | INFO     | . get job = 0 s
[2026-03-03 13:37:01] 2026-03-03 21:36:25,564 | INFO     | . initial setup = 25 s
[2026-03-03 13:37:01] 2026-03-03 21:36:25,565 | INFO     | . payload setup = 40 s
[2026-03-03 13:37:01] 2026-03-03 21:36:25,565 | INFO     | . stage-in = 0 s
[2026-03-03 13:37:01] 2026-03-03 21:36:25,565 | INFO     | . payload execution = 62 s
[2026-03-03 13:37:01] 2026-03-03 21:36:25,565 | INFO     | . stage-out = 1 s
[2026-03-03 13:37:01] 2026-03-03 21:36:25,565 | INFO     | . log creation = 0 s
[2026-03-03 13:37:01] 2026-03-03 21:36:25,565 | INFO     | ..............................
[2026-03-03 13:37:01] 2026-03-03 21:36:25,565 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2026-03-03 13:37:01] 2026-03-03 21:36:25,565 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-7036557494/pilotlog.txt
[2026-03-03 13:37:01] 2026-03-03 21:36:25,601 | INFO     | time since job start (227s) is within the limit (349056.0s)
[2026-03-03 13:37:01] 2026-03-03 21:36:25,653 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2026-03-03 13:37:01] - Log from pilotlog.txt -
[2026-03-03 13:37:01] 2026-03-03 21:36:25,563 | INFO     | extracted standard info from prmon json
[2026-03-03 13:37:01] 2026-03-03 21:36:25,563 | INFO     | extracted standard memory fields from prmon json
[2026-03-03 13:37:01] 2026-03-03 21:36:25,563 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-03 13:37:01] 2026-03-03 21:36:25,563 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-03 13:37:01] 2026-03-03 21:36:25,563 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-03 13:37:01] 2026-03-03 21:36:25,564 | WARNING  | wrong length of table data, x=[1772573633.0], y=[1620.0] (must be same and length>=4)
[2026-03-03 13:37:01] 2026-03-03 21:36:25,564 | INFO     | could have reported an average CPU frequency of 2550 MHz (4 samples)
[2026-03-03 13:37:01] 2026-03-03 21:36:25,564 | INFO     | ..............................
[2026-03-03 13:37:01] 2026-03-03 21:36:25,564 | INFO     | . Timing measurements:
[2026-03-03 13:37:01] 2026-03-03 21:36:25,564 | INFO     | . get job = 0 s
[2026-03-03 13:37:01] 2026-03-03 21:36:25,564 | INFO     | . initial setup = 25 s
[2026-03-03 13:37:01] 2026-03-03 21:36:25,565 | INFO     | . payload setup = 40 s
[2026-03-03 13:37:01] 2026-03-03 21:36:25,565 | INFO     | . stage-in = 0 s
[2026-03-03 13:37:01] 2026-03-03 21:36:25,565 | INFO     | . payload execution = 62 s
[2026-03-03 13:37:01] 2026-03-03 21:36:25,565 | INFO     | . stage-out = 1 s
[2026-03-03 13:37:01] 2026-03-03 21:36:25,565 | INFO     | . log creation = 0 s
[2026-03-03 13:37:01] 2026-03-03 21:36:25,565 | INFO     | ..............................
[2026-03-03 13:37:01] 2026-03-03 21:36:25,565 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2026-03-03 13:37:01] 2026-03-03 21:36:25,565 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-7036557494/pilotlog.txt
[2026-03-03 13:37:01] 2026-03-03 21:36:25,601 | INFO     | time since job start (227s) is within the limit (349056.0s)
[2026-03-03 13:37:01] 2026-03-03 21:36:25,653 | WARNING  | 
[2026-03-03 13:37:01] [begin log extracts]
[2026-03-03 13:37:01] - Log from pilotlog.txt -
[2026-03-03 13:37:01] 2026-03-03 21:36:25,563 | INFO     | extracted standard info from prmon json
[2026-03-03 13:37:01] 2026-03-03 21:36:25,563 | INFO     | extracted standard memory fields from prmon json
[2026-03-03 13:37:01] 2026-03-03 21:36:25,563 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-03 13:37:01] 2026-03-03 21:36:25,563 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-03 13:37:01] 2026-03-03 21:36:25,563 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-03 13:37:01] 2026-03-03 21:36:25,564 | WARNING  | wrong length of table data, x=[1772573633.0], y=[1620.0] (must be same and length>=4)
[2026-03-03 13:37:01] 2026-03-03 21:36:25,564 | INFO     | could have reported an average CPU frequency of 2550 MHz (4 samples)
[2026-03-03 13:37:01] 2026-03-03 21:36:25,564 | INFO     | ..............................
[2026-03-03 13:37:01] 2026-03-03 21:36:25,564 | INFO     | . Timing measurements:
[2026-03-03 13:37:01] 2026-03-03 21:36:25,564 | INFO     | . get job = 0 s
[2026-03-03 13:37:01] 2026-03-03 21:36:25,564 | INFO     | . initial setup = 25 s
[2026-03-03 13:37:01] 2026-03-03 21:36:25,565 | INFO     | . payload setup = 40 s
[2026-03-03 13:37:01] 2026-03-03 21:36:25,565 | INFO     | . stage-in = 0 s
[2026-03-03 13:37:01] 2026-03-03 21:36:25,565 | INFO     | . payload execution = 62 s
[2026-03-03 13:37:01] 2026-03-03 21:36:25,565 | INFO     | . stage-out = 1 s
[2026-03-03 13:37:01] 2026-03-03 21:36:25,565 | INFO     | . log creation = 0 s
[2026-03-03 13:37:01] 2026-03-03 21:36:25,565 | INFO     | ..............................
[2026-03-03 13:37:01] 2026-03-03 21:36:25,565 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2026-03-03 13:37:01] 2026-03-03 21:36:25,565 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-7036557494/pilotlog.txt
[2026-03-03 13:37:01] 2026-03-03 21:36:25,601 | INFO     | time since job start (227s) is within the limit (349056.0s)
[2026-03-03 13:37:01] [end log extracts]
[2026-03-03 13:37:01] 2026-03-03 21:36:25,653 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2026-03-03 13:37:01] 2026-03-03 21:36:25,654 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2026-03-03 13:37:01] 2026-03-03 21:36:26,490 | INFO     | 
[2026-03-03 13:37:01] 2026-03-03 21:36:26,491 | INFO     | job summary report
[2026-03-03 13:37:01] 2026-03-03 21:36:26,491 | INFO     | --------------------------------------------------
[2026-03-03 13:37:01] 2026-03-03 21:36:26,491 | INFO     | PanDA job id: 7036557494
[2026-03-03 13:37:01] 2026-03-03 21:36:26,491 | INFO     | task id: 48851702
[2026-03-03 13:37:01] 2026-03-03 21:36:26,491 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2026-03-03 13:34:18,077 CRITICAL Transform executor raised TransformValidationExceptio
[2026-03-03 13:37:01] 2026-03-03 21:36:26,491 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-03 13:37:01] 2026-03-03 21:36:26,491 | INFO     | pilot state: failed 
[2026-03-03 13:37:01] 2026-03-03 21:36:26,491 | INFO     | transexitcode: 65
[2026-03-03 13:37:01] 2026-03-03 21:36:26,491 | INFO     | exeerrorcode: 65
[2026-03-03 13:37:01] 2026-03-03 21:36:26,491 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1)
[2026-03-03 13:37:01] 2026-03-03 21:36:26,491 | INFO     | exitcode: 65
[2026-03-03 13:37:01] 2026-03-03 21:36:26,491 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1)
[2026-03-03 13:37:01] 2026-03-03 21:36:26,491 | INFO     | cpuconsumptiontime: 15 s
[2026-03-03 13:37:01] 2026-03-03 21:36:26,491 | INFO     | nevents: 0
[2026-03-03 13:37:01] 2026-03-03 21:36:26,491 | INFO     | neventsw: 0
[2026-03-03 13:37:01] 2026-03-03 21:36:26,491 | INFO     | pid: 1421041
[2026-03-03 13:37:01] 2026-03-03 21:36:26,491 | INFO     | pgrp: 1421041
[2026-03-03 13:37:01] 2026-03-03 21:36:26,491 | INFO     | corecount: 12
[2026-03-03 13:37:01] 2026-03-03 21:36:26,491 | INFO     | event service: False
[2026-03-03 13:37:01] 2026-03-03 21:36:26,491 | INFO     | sizes: {0: 2286727, 1: 2287188, 2: 2287188, 106: 2310462, 107: 2310438, 108: 2314758, 109: 2314914, 226: 2315108}
[2026-03-03 13:37:01] 2026-03-03 21:36:26,492 | INFO     | --------------------------------------------------
[2026-03-03 13:37:01] 2026-03-03 21:36:26,492 | INFO     | 
[2026-03-03 13:37:01] 2026-03-03 21:36:26,492 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2026-03-03 13:37:01] 2026-03-03 21:36:26,524 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-03 13:37:01] 2026-03-03 21:36:26,524 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-03 13:37:01] 2026-03-03 21:36:26,524 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-03 13:37:01] 2026-03-03 21:36:26,524 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-03 13:37:01] 2026-03-03 21:36:26,524 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-03 13:37:01] 2026-03-03 21:36:26,524 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-03 13:37:01] 2026-03-03 21:36:26,524 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-03 13:37:01] 2026-03-03 21:36:26,524 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-03 13:37:01] 2026-03-03 21:36:26,524 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-03 13:37:01] 2026-03-03 21:36:26,524 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-03 13:37:01] 2026-03-03 21:36:26,524 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-03 13:37:01] 2026-03-03 21:36:26,524 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-03 13:37:01] 2026-03-03 21:36:26,524 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-03 13:37:01] 2026-03-03 21:36:26,525 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-03 13:37:01] 2026-03-03 21:36:26,525 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-03 13:37:01] 2026-03-03 21:36:26,525 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-03 13:37:01] 2026-03-03 21:36:26,525 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-03 13:37:01] 2026-03-03 21:36:26,525 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-03 13:37:01] 2026-03-03 21:36:26,525 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-03 13:37:01] 2026-03-03 21:36:26,525 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-03 13:37:01] 2026-03-03 21:36:26,525 | INFO     | job 7036557494 has completed (purged errors)
[2026-03-03 13:37:01] 2026-03-03 21:36:26,525 | INFO     | overall cleanup function is called
[2026-03-03 13:37:01] 2026-03-03 21:36:27,531 | INFO     | --- collectZombieJob: --- 10, [1421041]
[2026-03-03 13:37:01] 2026-03-03 21:36:27,532 | INFO     | zombie collector waiting for pid 1421041
[2026-03-03 13:37:01] 2026-03-03 21:36:27,532 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-03 13:37:01] 2026-03-03 21:36:27,532 | INFO     | collected zombie processes
[2026-03-03 13:37:01] 2026-03-03 21:36:27,532 | INFO     | will attempt to kill all subprocesses of pid=1421041
[2026-03-03 13:37:01] 2026-03-03 21:36:28,599 | INFO     | process IDs to be killed: [1421041] (in reverse order)
[2026-03-03 13:37:01] 2026-03-03 21:36:28,798 | WARNING  | found no corresponding commands to process id(s)
[2026-03-03 13:37:01] 2026-03-03 21:36:28,798 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-03 13:37:01] 2026-03-03 21:36:28,805 | INFO     | did not find any defunct processes belonging to 1421041
[2026-03-03 13:37:01] 2026-03-03 21:36:28,811 | INFO     | did not find any defunct processes belonging to 1421041
[2026-03-03 13:37:01] 2026-03-03 21:36:28,812 | INFO     | ready for new job
[2026-03-03 13:37:01] 2026-03-03 21:36:28,812 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-03 13:37:01] 2026-03-03 21:36:28,833 | INFO     | **************************************
[2026-03-03 13:37:01] 2026-03-03 21:36:28,834 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-03 13:37:01] 2026-03-03 21:36:28,834 | INFO     | **************************************
[2026-03-03 13:37:01] 2026-03-03 21:36:28,834 | INFO     | 
[2026-03-03 13:37:01] 2026-03-03 21:36:28,836 | INFO     | architecture information:
[2026-03-03 13:37:01] 2026-03-03 21:36:28,853 | INFO     | executing command: cat /etc/os-release
[2026-03-03 13:37:01] 2026-03-03 21:36:28,884 | INFO     | cat /etc/os-release:
[2026-03-03 13:37:01] NAME="CentOS Linux"
[2026-03-03 13:37:01] VERSION="7 (Core)"
[2026-03-03 13:37:01] ID="centos"
[2026-03-03 13:37:01] ID_LIKE="rhel fedora"
[2026-03-03 13:37:01] VERSION_ID="7"
[2026-03-03 13:37:01] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-03 13:37:01] ANSI_COLOR="0;31"
[2026-03-03 13:37:01] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-03 13:37:01] HOME_URL="https://www.centos.org/"
[2026-03-03 13:37:01] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-03 13:37:01] 
[2026-03-03 13:37:01] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-03 13:37:01] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-03 13:37:01] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-03 13:37:01] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-03 13:37:01] 
[2026-03-03 13:37:01] 2026-03-03 21:36:28,885 | INFO     | **************************************
[2026-03-03 13:37:01] 2026-03-03 21:36:29,389 | INFO     | executing command: df -mP /home/boinc/slots/0
[2026-03-03 13:37:01] 2026-03-03 21:36:29,414 | INFO     | sufficient remaining disk space (2069807235072 B)
[2026-03-03 13:37:01] 2026-03-03 21:36:29,414 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-03 13:37:01] 2026-03-03 21:36:29,414 | INFO     | current server update state: UPDATING_FINAL
[2026-03-03 13:37:01] 2026-03-03 21:36:29,414 | INFO     | update_server=False
[2026-03-03 13:37:01] 2026-03-03 21:36:29,414 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-03 13:37:01] 2026-03-03 21:36:29,415 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-03 13:37:01] 2026-03-03 21:36:29,535 | INFO     | all data control threads have been joined
[2026-03-03 13:37:01] 2026-03-03 21:36:29,561 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-03 13:37:01] 2026-03-03 21:36:29,562 | INFO     | aborting loop
[2026-03-03 13:37:01] 2026-03-03 21:36:30,420 | INFO     | [job] retrieve thread has finished
[2026-03-03 13:37:01] 2026-03-03 21:36:30,527 | INFO     | [payload] failed_post thread has finished
[2026-03-03 13:37:01] 2026-03-03 21:36:30,541 | INFO     | [data] control thread has finished
[2026-03-03 13:37:01] 2026-03-03 21:36:30,567 | INFO     | [job] job monitor thread has finished
[2026-03-03 13:37:01] 2026-03-03 21:36:30,612 | INFO     | all job control threads have been joined
[2026-03-03 13:37:01] 2026-03-03 21:36:30,887 | INFO     | all payload control threads have been joined
[2026-03-03 13:37:01] 2026-03-03 21:36:30,981 | INFO     | [payload] validate_pre thread has finished
[2026-03-03 13:37:01] 2026-03-03 21:36:31,067 | INFO     | [job] create_data_payload thread has finished
[2026-03-03 13:37:01] 2026-03-03 21:36:31,121 | INFO     | [payload] validate_post thread has finished
[2026-03-03 13:37:01] 2026-03-03 21:36:31,194 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-03 13:37:01] 2026-03-03 21:36:31,205 | INFO     | [payload] execute_payloads thread has finished
[2026-03-03 13:37:01] 2026-03-03 21:36:31,421 | INFO     | [data] copytool_out thread has finished
[2026-03-03 13:37:01] 2026-03-03 21:36:31,464 | INFO     | [data] copytool_in thread has finished
[2026-03-03 13:37:01] 2026-03-03 21:36:31,553 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-03 13:37:01] 2026-03-03 21:36:31,619 | INFO     | [job] control thread has finished
[2026-03-03 13:37:01] 2026-03-03 21:36:31,880 | INFO     | [job] validate thread has finished
[2026-03-03 13:37:01] 2026-03-03 21:36:31,893 | INFO     | [payload] control thread has finished
[2026-03-03 13:37:01] 2026-03-03 21:36:32,200 | INFO     | [job] queue monitor thread has finished
[2026-03-03 13:37:01] 2026-03-03 21:36:32,400 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-03 13:37:01] 2026-03-03 21:36:36,410 | INFO     | [data] queue_monitor thread has finished
[2026-03-03 13:37:01] 2026-03-03 21:36:37,782 | INFO     | [monitor] cgroup control has ended
[2026-03-03 13:37:01] 2026-03-03 21:36:38,678 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139623503832896)>', '<ExcThread(monitor, started 139623103702784)>']
[2026-03-03 13:37:01] 2026-03-03 21:36:43,704 | INFO     | all workflow threads have been joined
[2026-03-03 13:37:01] 2026-03-03 21:36:43,705 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-03 13:37:01] 2026-03-03 21:36:43,705 | INFO     | traces error code: 0
[2026-03-03 13:37:01] 2026-03-03 21:36:43,705 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-03 13:37:01] 2026-03-03 21:36:59,683 | INFO     | PID=1416415 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-03 13:37:01] 2026-03-03 21:36:59,683 | INFO     | .. there are 21 such processes running
[2026-03-03 13:37:01] 2026-03-03 21:36:59,683 | INFO     | found 0 job(s) in 20 queues
[2026-03-03 13:37:01] 2026-03-03 21:36:59,683 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-03 13:37:01] 2026-03-03 21:36:59,683 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-03 13:37:01] 2026-03-03 21:36:59,683 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-03 13:37:01] 2026-03-03 21:36:59,683 | INFO     | [monitor] control thread has ended
[2026-03-03 13:37:01] 2026-03-03 21:37:00,205 [wrapper] ==== pilot stdout END ====
[2026-03-03 13:37:01] 2026-03-03 21:37:00,207 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-03 13:37:01] 2026-03-03 21:37:00,209 [wrapper] pilotpid: 1416415
[2026-03-03 13:37:01] 2026-03-03 21:37:00,211 [wrapper] Pilot exit status: 0
[2026-03-03 13:37:01] 2026-03-03 21:37:00,241 [wrapper] pandaids: 7036557494
[2026-03-03 13:37:01] 2026-03-03 21:37:00,615 [wrapper] cleanup supervisor_pilot 1416421 1416416
[2026-03-03 13:37:01] 2026-03-03 21:37:00,619 [wrapper] Test setup, not cleaning
[2026-03-03 13:37:01] 2026-03-03 21:37:00,621 [wrapper] apfmon messages muted
[2026-03-03 13:37:01] 2026-03-03 21:37:00,623 [wrapper] ==== wrapper stdout END ====
[2026-03-03 13:37:01] 2026-03-03 21:37:00,625 [wrapper] ==== wrapper stderr END ====
[2026-03-03 13:37:01]  *** Error codes and diagnostics ***
[2026-03-03 13:37:01]     "exeErrorCode": 65,
[2026-03-03 13:37:01]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
[2026-03-03 13:37:01]     "pilotErrorCode": 1305,
[2026-03-03 13:37:01]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
[2026-03-03 13:37:01]  *** Listing of results directory ***
[2026-03-03 13:37:01] total 243472
[2026-03-03 13:37:01] -rw-r--r--. 1 boinc boinc      5111 Mar  3 11:08 queuedata.json
[2026-03-03 13:37:01] -rw-r--r--. 1 boinc boinc    584627 Mar  3 11:08 pilot3.tar.gz
[2026-03-03 13:37:01] -rwx------. 1 boinc boinc     36322 Mar  3 11:09 runpilot2-wrapper.sh
[2026-03-03 13:37:01] -rw-r--r--. 1 boinc boinc       100 Mar  3 13:31 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-03 13:37:01] -rwxr-xr-x. 1 boinc boinc      7986 Mar  3 13:31 run_atlas
[2026-03-03 13:37:01] -rw-r--r--. 1 boinc boinc       105 Mar  3 13:31 job.xml
[2026-03-03 13:37:01] -rw-r--r--. 1 boinc boinc      6594 Mar  3 13:31 init_data.xml
[2026-03-03 13:37:01] -rw-r--r--. 2 boinc boinc 245169124 Mar  3 13:31 EVNT.48460742._000003.pool.root.1
[2026-03-03 13:37:01] -rw-r--r--. 2 boinc boinc     15845 Mar  3 13:31 start_atlas.sh
[2026-03-03 13:37:01] drwxrwx--x. 2 boinc boinc      4096 Mar  3 13:31 shared
[2026-03-03 13:37:01] -rw-r--r--. 2 boinc boinc    597977 Mar  3 13:31 input.tar.gz
[2026-03-03 13:37:01] -rw-r--r--. 1 boinc boinc         0 Mar  3 13:31 boinc_lockfile
[2026-03-03 13:37:01] -rw-r--r--. 1 boinc boinc      2632 Mar  3 13:31 pandaJob.out
[2026-03-03 13:37:01] -rw-------. 1 boinc boinc    998484 Mar  3 13:32 agis_schedconf.cvmfs.json
[2026-03-03 13:37:01] -rw-------. 1 boinc boinc   1516092 Mar  3 13:32 agis_ddmendpoints.agis.ALL.json
[2026-03-03 13:37:01] -rw-------. 1 boinc boinc       444 Mar  3 13:32 workernode_map.json
[2026-03-03 13:37:01] drwx------. 5 boinc boinc      4096 Mar  3 13:32 pilot3
[2026-03-03 13:37:01] -rw-r--r--. 1 boinc boinc       523 Mar  3 13:34 boinc_task_state.xml
[2026-03-03 13:37:01] -rw-------. 1 boinc boinc       962 Mar  3 13:34 memory_monitor_summary.json
[2026-03-03 13:37:01] -rw-------. 1 boinc boinc     22167 Mar  3 13:34 log.48851702._000068.job.log.tgz.1
[2026-03-03 13:37:01] -rw-------. 1 boinc boinc        95 Mar  3 13:36 pilot_heartbeat.json
[2026-03-03 13:37:01] -rw-------. 1 boinc boinc      7014 Mar  3 13:36 heartbeat.json
[2026-03-03 13:37:01] -rw-r--r--. 1 boinc boinc      8192 Mar  3 13:36 boinc_mmap_file
[2026-03-03 13:37:01] -rw-r--r--. 1 boinc boinc        22 Mar  3 13:36 wrapper_checkpoint.txt
[2026-03-03 13:37:01] -rw-------. 1 boinc boinc       823 Mar  3 13:36 pilotlog.txt
[2026-03-03 13:37:01] -rw-------. 1 boinc boinc     88347 Mar  3 13:37 log.48851702._000068.job.log.1
[2026-03-03 13:37:01] -rw-------. 1 boinc boinc       188 Mar  3 13:37 output.list
[2026-03-03 13:37:01] -rw-r--r--. 1 boinc boinc       620 Mar  3 13:37 runtime_log
[2026-03-03 13:37:01] -rw-------. 1 boinc boinc    133120 Mar  3 13:37 result.tar.gz
[2026-03-03 13:37:01] -rw-r--r--. 1 boinc boinc      8635 Mar  3 13:37 runtime_log.err
[2026-03-03 13:37:01] -rw-------. 1 boinc boinc       643 Mar  3 13:37 0UYKDmKIkH9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmYTHLDmR0QQHn.diag
[2026-03-03 13:37:01] -rw-r--r--. 1 boinc boinc     21737 Mar  3 13:37 stderr.txt
[2026-03-03 13:37:01] No HITS result produced
[2026-03-03 13:37:01]  *** Contents of shared directory: ***
[2026-03-03 13:37:01] total 240156
[2026-03-03 13:37:01] -rw-r--r--. 2 boinc boinc 245169124 Mar  3 13:31 ATLAS.root_0
[2026-03-03 13:37:01] -rw-r--r--. 2 boinc boinc     15845 Mar  3 13:31 start_atlas.sh
[2026-03-03 13:37:01] -rw-r--r--. 2 boinc boinc    597977 Mar  3 13:31 input.tar.gz
[2026-03-03 13:37:01] -rw-------. 1 boinc boinc    133120 Mar  3 13:37 result.tar.gz
13:37:02 (1412671): run_atlas exited; CPU time 24.429498
13:37:02 (1412671): called boinc_finish(0)

</stderr_txt>
]]>

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