Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
18:35:27 (854644): wrapper (7.7.26015): starting
18:35:27 (854644): wrapper: running run_atlas (--nthreads 12)
[2026-03-03 18:35:27] Arguments: --nthreads 12
[2026-03-03 18:35:27] Threads: 12
[2026-03-03 18:35:27] Checking for CVMFS
[2026-03-03 18:35:27] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-03 18:35:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-03 18:35:27] Running cvmfs_config stat atlas.cern.ch
[2026-03-03 18:35:27] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-03 18:35:27] 2.11.0.0 823861 0 30908 156853 3 19 5387379 6144001 420 130560 0 67431 99.978 2902 1310 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2026-03-03 18:35:27] CVMFS is ok
[2026-03-03 18:35:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-03 18:35:27] Checking for apptainer binary...
[2026-03-03 18:35:27] apptainer is not installed, using version from CVMFS
[2026-03-03 18:35:27] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-03 18:35:27] radiat0r
[2026-03-03 18:35:27] apptainer works
[2026-03-03 18:35:27] Set ATHENA_PROC_NUMBER=12
[2026-03-03 18:35:27] Set ATHENA_CORE_NUMBER=12
[2026-03-03 18:35:27] Starting ATLAS job with PandaID=7032738897
[2026-03-03 18:35:27] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/14 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-03 19:35:56]  *** The last 200 lines of the pilot log: ***
[2026-03-03 19:35:56]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-03-03 19:35:56]  is_altstaged=None
[2026-03-03 19:35:56]  is_tar=False
[2026-03-03 19:35:56]  lfn=log.48838462._002101.job.log.tgz.1
[2026-03-03 19:35:56]  mtime=0
[2026-03-03 19:35:56]  protocol_id=None
[2026-03-03 19:35:56]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-03-03 19:35:56]  replicas=None
[2026-03-03 19:35:56]  scope=mc23_13p6TeV
[2026-03-03 19:35:56]  status=None
[2026-03-03 19:35:56]  status_code=0
[2026-03-03 19:35:56]  storage_token=
[2026-03-03 19:35:56]  surl=/var/lib/boinc/slots/14/PanDA_Pilot-7032738897/log.48838462._002101.job.log.tgz.1
[2026-03-03 19:35:56]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/02/c1/log.48838462._002101.job.log.tgz.1
[2026-03-03 19:35:56]  workdir=None
[2026-03-03 19:35:56] ]
[2026-03-03 19:35:56] 2026-03-03 19:35:01,804 | INFO     | transferring file log.48838462._002101.job.log.tgz.1 from /var/lib/boinc/slots/14/PanDA_Pilot-7032738897/log.48838462._002101.job.log.tgz.1 to /var/lib/boinc/slots
[2026-03-03 19:35:56] 2026-03-03 19:35:01,805 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/14/PanDA_Pilot-7032738897/log.48838462._002101.job.log.tgz.1 /var/lib/boinc/slots/14/log.48838462._002101.j
[2026-03-03 19:35:56] 2026-03-03 19:35:01,829 | INFO     | adding to output.list: log.48838462._002101.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/02/c1/log.48838462._002101.job.log.tg
[2026-03-03 19:35:56] 2026-03-03 19:35:01,831 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-03 19:35:56] 2026-03-03 19:35:01,831 | INFO     | summary of transferred files:
[2026-03-03 19:35:56] 2026-03-03 19:35:01,831 | INFO     |  -- lfn=log.48838462._002101.job.log.tgz.1, status_code=0, status=transferred
[2026-03-03 19:35:56] 2026-03-03 19:35:01,831 | INFO     | stage-out finished correctly
[2026-03-03 19:35:56] 2026-03-03 19:35:01,934 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-03 19:35:56] 2026-03-03 19:35:03,315 | INFO     | time since job start (3558s) is within the limit (349056.0s)
[2026-03-03 19:35:56] 2026-03-03 19:35:04,811 | INFO     | job 7032738897 has state=finished
[2026-03-03 19:35:56] 2026-03-03 19:35:04,812 | INFO     | preparing for final server update for job 7032738897 in state='finished'
[2026-03-03 19:35:56] 2026-03-03 19:35:04,812 | INFO     | reading metadata from: /var/lib/boinc/slots/14/PanDA_Pilot-7032738897/jobReport.json
[2026-03-03 19:35:56] 2026-03-03 19:35:04,815 | INFO     | added worker_node to metadata from /var/lib/boinc/slots/14/workernode_map.json
[2026-03-03 19:35:56] 2026-03-03 19:35:04,816 | INFO     | this job has now completed (state=finished)
[2026-03-03 19:35:56] 2026-03-03 19:35:04,816 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-03 19:35:56] 2026-03-03 19:35:04,816 | INFO     | log transfer has been attempted: DONE
[2026-03-03 19:35:56] 2026-03-03 19:35:04,816 | INFO     | job 7032738897 has finished - writing final server update
[2026-03-03 19:35:56] 2026-03-03 19:35:04,817 | INFO     | total number of processed events: 400 (read)
[2026-03-03 19:35:56] 2026-03-03 19:35:04,896 | INFO     | using path: /var/lib/boinc/slots/14/PanDA_Pilot-7032738897/memory_monitor_summary.json (trf name=prmon)
[2026-03-03 19:35:56] 2026-03-03 19:35:04,897 | INFO     | extracted standard info from prmon json
[2026-03-03 19:35:56] 2026-03-03 19:35:04,897 | INFO     | extracted standard memory fields from prmon json
[2026-03-03 19:35:56] 2026-03-03 19:35:04,897 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-03 19:35:56] 2026-03-03 19:35:04,897 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-03 19:35:56] 2026-03-03 19:35:04,897 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-03 19:35:56] 2026-03-03 19:35:04,899 | INFO     | fitting pss+swap vs Time
[2026-03-03 19:35:56] 2026-03-03 19:35:04,900 | INFO     | sum of square deviations: 41117050.0
[2026-03-03 19:35:56] 2026-03-03 19:35:04,900 | INFO     | sum of deviations: -34349953.99999999
[2026-03-03 19:35:56] 2026-03-03 19:35:04,900 | INFO     | mean x: 1772564798.0
[2026-03-03 19:35:56] 2026-03-03 19:35:04,900 | INFO     | mean y: 2705287.8039215687
[2026-03-03 19:35:56] 2026-03-03 19:35:04,900 | INFO     | intersect: 1483539133.4547956
[2026-03-03 19:35:56] 2026-03-03 19:35:04,901 | INFO     | chi2: 0.0004386027900346958
[2026-03-03 19:35:56] 2026-03-03 19:35:04,901 | INFO     | current memory leak: -0.84 B/s (using 51 data points, chi2=0.00)
[2026-03-03 19:35:56] 2026-03-03 19:35:04,901 | INFO     | could have reported an average CPU frequency of 1893 MHz (5 samples)
[2026-03-03 19:35:56] 2026-03-03 19:35:04,902 | INFO     | ..............................
[2026-03-03 19:35:56] 2026-03-03 19:35:04,902 | INFO     | . Timing measurements:
[2026-03-03 19:35:56] 2026-03-03 19:35:04,902 | INFO     | . get job = 0 s
[2026-03-03 19:35:56] 2026-03-03 19:35:04,902 | INFO     | . initial setup = 6 s
[2026-03-03 19:35:56] 2026-03-03 19:35:04,902 | INFO     | . payload setup = 6 s
[2026-03-03 19:35:56] 2026-03-03 19:35:04,902 | INFO     | . stage-in = 0 s
[2026-03-03 19:35:56] 2026-03-03 19:35:04,902 | INFO     | . payload execution = 3534 s
[2026-03-03 19:35:56] 2026-03-03 19:35:04,902 | INFO     | . stage-out = 0 s
[2026-03-03 19:35:56] 2026-03-03 19:35:04,902 | INFO     | . log creation = 0 s
[2026-03-03 19:35:56] 2026-03-03 19:35:04,903 | INFO     | ..............................
[2026-03-03 19:35:56] 2026-03-03 19:35:04,997 | INFO     | 
[2026-03-03 19:35:56] 2026-03-03 19:35:04,997 | INFO     | job summary report
[2026-03-03 19:35:56] 2026-03-03 19:35:04,998 | INFO     | --------------------------------------------------
[2026-03-03 19:35:56] 2026-03-03 19:35:04,998 | INFO     | PanDA job id: 7032738897
[2026-03-03 19:35:56] 2026-03-03 19:35:04,998 | INFO     | task id: 48838462
[2026-03-03 19:35:56] 2026-03-03 19:35:04,998 | INFO     | errors: (none)
[2026-03-03 19:35:56] 2026-03-03 19:35:04,998 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-03 19:35:56] 2026-03-03 19:35:04,998 | INFO     | pilot state: finished 
[2026-03-03 19:35:56] 2026-03-03 19:35:04,999 | INFO     | transexitcode: 0
[2026-03-03 19:35:56] 2026-03-03 19:35:04,999 | INFO     | exeerrorcode: 0
[2026-03-03 19:35:56] 2026-03-03 19:35:04,999 | INFO     | exeerrordiag: 
[2026-03-03 19:35:56] 2026-03-03 19:35:04,999 | INFO     | exitcode: 0
[2026-03-03 19:35:56] 2026-03-03 19:35:04,999 | INFO     | exitmsg: OK
[2026-03-03 19:35:56] 2026-03-03 19:35:04,999 | INFO     | cpuconsumptiontime: 39691 s
[2026-03-03 19:35:56] 2026-03-03 19:35:05,000 | INFO     | nevents: 400
[2026-03-03 19:35:56] 2026-03-03 19:35:05,000 | INFO     | neventsw: 0
[2026-03-03 19:35:56] 2026-03-03 19:35:05,000 | INFO     | pid: 936236
[2026-03-03 19:35:56] 2026-03-03 19:35:05,000 | INFO     | pgrp: 936236
[2026-03-03 19:35:56] 2026-03-03 19:35:05,000 | INFO     | corecount: 12
[2026-03-03 19:35:56] 2026-03-03 19:35:05,000 | INFO     | event service: False
[2026-03-03 19:35:56] 2026-03-03 19:35:05,000 | INFO     | sizes: {0: 2287071, 11: 2287071, 3544: 2312924, 3545: 2321980, 3548: 2322150}
[2026-03-03 19:35:56] 2026-03-03 19:35:05,001 | INFO     | --------------------------------------------------
[2026-03-03 19:35:56] 2026-03-03 19:35:05,001 | INFO     | 
[2026-03-03 19:35:56] 2026-03-03 19:35:05,001 | INFO     | executing command: ls -lF /var/lib/boinc/slots/14
[2026-03-03 19:35:56] 2026-03-03 19:35:05,037 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-03 19:35:56] 2026-03-03 19:35:05,038 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-03 19:35:56] 2026-03-03 19:35:05,038 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-03 19:35:56] 2026-03-03 19:35:05,038 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-03 19:35:56] 2026-03-03 19:35:05,038 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-03 19:35:56] 2026-03-03 19:35:05,038 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-03 19:35:56] 2026-03-03 19:35:05,039 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-03 19:35:56] 2026-03-03 19:35:05,039 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-03 19:35:56] 2026-03-03 19:35:05,039 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-03 19:35:56] 2026-03-03 19:35:05,039 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-03 19:35:56] 2026-03-03 19:35:05,039 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-03 19:35:56] 2026-03-03 19:35:05,039 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-03 19:35:56] 2026-03-03 19:35:05,040 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-03 19:35:56] 2026-03-03 19:35:05,040 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-03 19:35:56] 2026-03-03 19:35:05,040 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-03 19:35:56] 2026-03-03 19:35:05,040 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-03 19:35:56] 2026-03-03 19:35:05,040 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-03 19:35:56] 2026-03-03 19:35:05,040 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-03 19:35:56] 2026-03-03 19:35:05,041 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-03 19:35:56] 2026-03-03 19:35:05,041 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-03 19:35:56] 2026-03-03 19:35:05,041 | INFO     | job 7032738897 has completed (purged errors)
[2026-03-03 19:35:56] 2026-03-03 19:35:05,041 | INFO     | overall cleanup function is called
[2026-03-03 19:35:56] 2026-03-03 19:35:05,334 | WARNING  | process 936236 can no longer be monitored (due to stat problems) - aborting
[2026-03-03 19:35:56] 2026-03-03 19:35:05,946 | INFO     | using path: /var/lib/boinc/slots/14/memory_monitor_summary.json (trf name=prmon)
[2026-03-03 19:35:56] 2026-03-03 19:35:06,052 | INFO     | --- collectZombieJob: --- 10, [936236]
[2026-03-03 19:35:56] 2026-03-03 19:35:06,052 | INFO     | zombie collector waiting for pid 936236
[2026-03-03 19:35:56] 2026-03-03 19:35:06,052 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-03 19:35:56] 2026-03-03 19:35:06,052 | INFO     | collected zombie processes
[2026-03-03 19:35:56] 2026-03-03 19:35:06,052 | INFO     | will attempt to kill all subprocesses of pid=936236
[2026-03-03 19:35:56] 2026-03-03 19:35:08,342 | INFO     | number of running child processes to parent process 936236: 1
[2026-03-03 19:35:56] 2026-03-03 19:35:08,343 | INFO     | maximum number of monitored processes: 6
[2026-03-03 19:35:56] 2026-03-03 19:35:08,343 | INFO     | aborting job monitoring since job object (job id=7032738897) has expired
[2026-03-03 19:35:56] 2026-03-03 19:35:08,411 | INFO     | process IDs to be killed: [936236] (in reverse order)
[2026-03-03 19:35:56] 2026-03-03 19:35:08,696 | WARNING  | found no corresponding commands to process id(s)
[2026-03-03 19:35:56] 2026-03-03 19:35:08,697 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-03 19:35:56] 2026-03-03 19:35:08,724 | INFO     | did not find any defunct processes belonging to 936236
[2026-03-03 19:35:56] 2026-03-03 19:35:08,750 | INFO     | did not find any defunct processes belonging to 936236
[2026-03-03 19:35:56] 2026-03-03 19:35:08,751 | INFO     | ready for new job
[2026-03-03 19:35:56] 2026-03-03 19:35:08,751 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-03 19:35:56] 2026-03-03 19:35:08,755 | INFO     | **************************************
[2026-03-03 19:35:56] 2026-03-03 19:35:08,755 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-03 19:35:56] 2026-03-03 19:35:08,756 | INFO     | **************************************
[2026-03-03 19:35:56] 2026-03-03 19:35:08,756 | INFO     | 
[2026-03-03 19:35:56] 2026-03-03 19:35:08,793 | INFO     | architecture information:
[2026-03-03 19:35:56] 2026-03-03 19:35:08,794 | INFO     | executing command: cat /etc/os-release
[2026-03-03 19:35:56] 2026-03-03 19:35:08,819 | INFO     | cat /etc/os-release:
[2026-03-03 19:35:56] NAME="CentOS Linux"
[2026-03-03 19:35:56] VERSION="7 (Core)"
[2026-03-03 19:35:56] ID="centos"
[2026-03-03 19:35:56] ID_LIKE="rhel fedora"
[2026-03-03 19:35:56] VERSION_ID="7"
[2026-03-03 19:35:56] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-03 19:35:56] ANSI_COLOR="0;31"
[2026-03-03 19:35:56] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-03 19:35:56] HOME_URL="https://www.centos.org/"
[2026-03-03 19:35:56] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-03 19:35:56] 
[2026-03-03 19:35:56] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-03 19:35:56] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-03 19:35:56] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-03 19:35:56] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-03 19:35:56] 
[2026-03-03 19:35:56] 2026-03-03 19:35:08,820 | INFO     | **************************************
[2026-03-03 19:35:56] 2026-03-03 19:35:09,323 | INFO     | executing command: df -mP /var/lib/boinc/slots/14
[2026-03-03 19:35:56] 2026-03-03 19:35:09,352 | INFO     | sufficient remaining disk space (1712904470528 B)
[2026-03-03 19:35:56] 2026-03-03 19:35:09,352 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-03 19:35:56] 2026-03-03 19:35:09,353 | INFO     | current server update state: UPDATING_FINAL
[2026-03-03 19:35:56] 2026-03-03 19:35:09,353 | INFO     | update_server=False
[2026-03-03 19:35:56] 2026-03-03 19:35:09,353 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-03 19:35:56] 2026-03-03 19:35:09,353 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-03 19:35:56] 2026-03-03 19:35:09,353 | INFO     | aborting loop
[2026-03-03 19:35:56] 2026-03-03 19:35:09,726 | INFO     | all data control threads have been joined
[2026-03-03 19:35:56] 2026-03-03 19:35:09,779 | INFO     | all job control threads have been joined
[2026-03-03 19:35:56] 2026-03-03 19:35:09,856 | INFO     | all payload control threads have been joined
[2026-03-03 19:35:56] 2026-03-03 19:35:09,946 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-03 19:35:56] 2026-03-03 19:35:10,008 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-03 19:35:56] 2026-03-03 19:35:10,354 | INFO     | [job] retrieve thread has finished
[2026-03-03 19:35:56] 2026-03-03 19:35:10,359 | INFO     | [job] job monitor thread has finished
[2026-03-03 19:35:56] 2026-03-03 19:35:10,731 | INFO     | [data] control thread has finished
[2026-03-03 19:35:56] 2026-03-03 19:35:10,785 | INFO     | [job] control thread has finished
[2026-03-03 19:35:56] 2026-03-03 19:35:10,831 | INFO     | [payload] execute_payloads thread has finished
[2026-03-03 19:35:56] 2026-03-03 19:35:10,859 | INFO     | [payload] control thread has finished
[2026-03-03 19:35:56] 2026-03-03 19:35:11,014 | INFO     | [job] queue monitor thread has finished
[2026-03-03 19:35:56] 2026-03-03 19:35:11,100 | INFO     | [job] create_data_payload thread has finished
[2026-03-03 19:35:56] 2026-03-03 19:35:11,230 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-03 19:35:56] 2026-03-03 19:35:11,234 | INFO     | [job] validate thread has finished
[2026-03-03 19:35:56] 2026-03-03 19:35:11,336 | INFO     | [payload] validate_pre thread has finished
[2026-03-03 19:35:56] 2026-03-03 19:35:11,530 | INFO     | [payload] validate_post thread has finished
[2026-03-03 19:35:56] 2026-03-03 19:35:11,679 | INFO     | [payload] failed_post thread has finished
[2026-03-03 19:35:56] 2026-03-03 19:35:11,738 | INFO     | [data] copytool_in thread has finished
[2026-03-03 19:35:56] 2026-03-03 19:35:11,952 | INFO     | [data] copytool_out thread has finished
[2026-03-03 19:35:56] 2026-03-03 19:35:12,543 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-03 19:35:56] 2026-03-03 19:35:16,546 | INFO     | [data] queue_monitor thread has finished
[2026-03-03 19:35:56] 2026-03-03 19:35:37,385 | INFO     | PID=870731 has CPU usage=17.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-03 19:35:56] 2026-03-03 19:35:37,385 | INFO     | .. there are 17 such processes running
[2026-03-03 19:35:56] 2026-03-03 19:35:37,387 | INFO     | found 0 job(s) in 20 queues
[2026-03-03 19:35:56] 2026-03-03 19:35:37,387 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-03 19:35:56] 2026-03-03 19:35:37,387 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-03 19:35:56] 2026-03-03 19:35:38,326 [wrapper] supervise_pilot (15 min periods counter: 5)
[2026-03-03 19:35:56] 2026-03-03 19:35:50,198 | INFO     | [monitor] cgroup control has ended
[2026-03-03 19:35:56] 2026-03-03 19:35:50,747 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139684734723904)>', '<ExcThread(monitor, started 139684080514816)>']
[2026-03-03 19:35:56] 2026-03-03 19:35:51,457 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-03 19:35:56] 2026-03-03 19:35:51,457 | INFO     | [monitor] control thread has ended
[2026-03-03 19:35:56] 2026-03-03 19:35:55,773 | INFO     | all workflow threads have been joined
[2026-03-03 19:35:56] 2026-03-03 19:35:55,773 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-03 19:35:56] 2026-03-03 19:35:55,774 | INFO     | traces error code: 0
[2026-03-03 19:35:56] 2026-03-03 19:35:55,774 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-03 19:35:56] 2026-03-03 19:35:55,954 [wrapper] ==== pilot stdout END ====
[2026-03-03 19:35:56] 2026-03-03 19:35:55,958 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-03 19:35:56] 2026-03-03 19:35:55,961 [wrapper] pilotpid: 870731
[2026-03-03 19:35:56] 2026-03-03 19:35:55,964 [wrapper] Pilot exit status: 0
[2026-03-03 19:35:56] 2026-03-03 19:35:55,976 [wrapper] pandaids: 7032738897
[2026-03-03 19:35:56] 2026-03-03 19:35:56,139 [wrapper] cleanup supervisor_pilot 1253963 870732
[2026-03-03 19:35:56] 2026-03-03 19:35:56,143 [wrapper] Test setup, not cleaning
[2026-03-03 19:35:56] 2026-03-03 19:35:56,146 [wrapper] apfmon messages muted
[2026-03-03 19:35:56] 2026-03-03 19:35:56,149 [wrapper] ==== wrapper stdout END ====
[2026-03-03 19:35:56] 2026-03-03 19:35:56,153 [wrapper] ==== wrapper stderr END ====
[2026-03-03 19:35:56]  *** Error codes and diagnostics ***
[2026-03-03 19:35:56]     "exeErrorCode": 0,
[2026-03-03 19:35:56]     "exeErrorDiag": "",
[2026-03-03 19:35:56]     "pilotErrorCode": 0,
[2026-03-03 19:35:56]     "pilotErrorDiag": "",
[2026-03-03 19:35:56]  *** Listing of results directory ***
[2026-03-03 19:35:56] total 483048
[2026-03-03 19:35:56] -rw-r--r-- 1 boinc boinc    584627 Feb 28 08:11 pilot3.tar.gz
[2026-03-03 19:35:56] -rwx------ 1 boinc boinc     36322 Feb 28 08:14 runpilot2-wrapper.sh
[2026-03-03 19:35:56] -rw-r--r-- 1 boinc boinc      5111 Feb 28 08:16 queuedata.json
[2026-03-03 19:35:56] -rw-r--r-- 1 boinc boinc       100 Mar  3 18:35 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-03 19:35:56] -rwxr-xr-x 1 boinc boinc      7986 Mar  3 18:35 run_atlas
[2026-03-03 19:35:56] -rw-r--r-- 1 boinc boinc       105 Mar  3 18:35 job.xml
[2026-03-03 19:35:56] -rw-r--r-- 2 boinc boinc     15845 Mar  3 18:35 start_atlas.sh
[2026-03-03 19:35:56] drwxrwx--x 2 boinc boinc      4096 Mar  3 18:35 shared
[2026-03-03 19:35:56] -rw-r--r-- 2 boinc boinc    597966 Mar  3 18:35 input.tar.gz
[2026-03-03 19:35:56] -rw-r--r-- 1 boinc boinc      9415 Mar  3 18:35 init_data.xml
[2026-03-03 19:35:56] -rw-r--r-- 2 boinc boinc 278278390 Mar  3 18:35 EVNT.48220133._000083.pool.root.1
[2026-03-03 19:35:56] -rw-r--r-- 1 boinc boinc         0 Mar  3 18:35 boinc_setup_complete
[2026-03-03 19:35:56] -rw-r--r-- 1 boinc boinc         0 Mar  3 18:35 boinc_lockfile
[2026-03-03 19:35:56] -rw-r--r-- 1 boinc boinc      2561 Mar  3 18:35 pandaJob.out
[2026-03-03 19:35:56] -rw------- 1 boinc boinc    998492 Mar  3 18:35 agis_schedconf.cvmfs.json
[2026-03-03 19:35:56] -rw------- 1 boinc boinc   1516092 Mar  3 18:35 agis_ddmendpoints.agis.ALL.json
[2026-03-03 19:35:56] -rw------- 1 boinc boinc       421 Mar  3 18:35 workernode_map.json
[2026-03-03 19:35:56] drwx------ 5 boinc boinc      4096 Mar  3 18:35 pilot3
[2026-03-03 19:35:56] -rw------- 1 boinc boinc 210672717 Mar  3 19:34 HITS.48838462._002101.pool.root.1
[2026-03-03 19:35:56] -rw-r--r-- 1 boinc boinc       530 Mar  3 19:34 boinc_task_state.xml
[2026-03-03 19:35:56] -rw------- 1 boinc boinc      1029 Mar  3 19:34 memory_monitor_summary.json
[2026-03-03 19:35:56] -rw------- 1 boinc boinc    356126 Mar  3 19:35 log.48838462._002101.job.log.tgz.1
[2026-03-03 19:35:56] -rw------- 1 boinc boinc      6281 Mar  3 19:35 heartbeat.json
[2026-03-03 19:35:56] -rw------- 1 boinc boinc        95 Mar  3 19:35 pilot_heartbeat.json
[2026-03-03 19:35:56] -rw-r--r-- 1 boinc boinc      8192 Mar  3 19:35 boinc_mmap_file
[2026-03-03 19:35:56] -rw-r--r-- 1 boinc boinc        27 Mar  3 19:35 wrapper_checkpoint.txt
[2026-03-03 19:35:56] -rw------- 1 boinc boinc      4823 Mar  3 19:35 pilotlog.txt
[2026-03-03 19:35:56] -rw------- 1 boinc boinc    520709 Mar  3 19:35 log.48838462._002101.job.log.1
[2026-03-03 19:35:56] -rw------- 1 boinc boinc       357 Mar  3 19:35 output.list
[2026-03-03 19:35:56] -rw-r--r-- 1 boinc boinc       620 Mar  3 19:35 runtime_log
[2026-03-03 19:35:56] -rw------- 1 boinc boinc    890880 Mar  3 19:35 result.tar.gz
[2026-03-03 19:35:56] -rw-r--r-- 1 boinc boinc      8787 Mar  3 19:35 runtime_log.err
[2026-03-03 19:35:56] -rw------- 1 boinc boinc       643 Mar  3 19:35 EvNNDm5dUG9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmii6KDm8AHtIm.diag
[2026-03-03 19:35:56] -rw-r--r-- 1 boinc boinc     21106 Mar  3 19:35 stderr.txt
[2026-03-03 19:35:56] HITS file was successfully produced:
[2026-03-03 19:35:56] -rw------- 1 boinc boinc 210672717 Mar  3 19:34 shared/HITS.pool.root.1
[2026-03-03 19:35:56]  *** Contents of shared directory: ***
[2026-03-03 19:35:56] total 478976
[2026-03-03 19:35:56] -rw-r--r-- 2 boinc boinc     15845 Mar  3 18:35 start_atlas.sh
[2026-03-03 19:35:56] -rw-r--r-- 2 boinc boinc    597966 Mar  3 18:35 input.tar.gz
[2026-03-03 19:35:56] -rw-r--r-- 2 boinc boinc 278278390 Mar  3 18:35 ATLAS.root_0
[2026-03-03 19:35:56] -rw------- 1 boinc boinc 210672717 Mar  3 19:34 HITS.pool.root.1
[2026-03-03 19:35:56] -rw------- 1 boinc boinc    890880 Mar  3 19:35 result.tar.gz
19:35:58 (854644): run_atlas exited; CPU time 39924.207522
19:35:58 (854644): called boinc_finish(0)

</stderr_txt>
]]>

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