Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
08:08:47 (1325475): wrapper (7.7.26015): starting
08:08:47 (1325475): wrapper: running run_atlas (--nthreads 3)
[2026-03-04 08:08:47] Arguments: --nthreads 3
[2026-03-04 08:08:47] Threads: 3
[2026-03-04 08:08:47] Checking for CVMFS
[2026-03-04 08:08:48] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-04 08:08:48] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-04 08:08:48] Running cvmfs_config stat atlas.cern.ch
[2026-03-04 08:08:48] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-04 08:08:48] 2.9.2.0 36558 9602 83176 156873 1 50 27772815 36864000 0 130560 0 3628501 99.980 365466 16304 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-04 08:08:48] CVMFS is ok
[2026-03-04 08:08:48] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-04 08:08:48] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-04 08:08:48] Further information can be found at the LHC@home message board.
[2026-03-04 08:08:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-04 08:08:48] Checking for apptainer binary...
[2026-03-04 08:08:48] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-04 08:08:48] Running /usr/bin/apptainer --version
[2026-03-04 08:08:48] apptainer version 1.4.1-1.1
[2026-03-04 08:08:48] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-04 08:08:48] magicA252
[2026-03-04 08:08:48] apptainer works
[2026-03-04 08:08:48] Set ATHENA_PROC_NUMBER=3
[2026-03-04 08:08:48] Set ATHENA_CORE_NUMBER=3
[2026-03-04 08:08:48] Starting ATLAS job with PandaID=7038488324
[2026-03-04 08:08:48] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-04 09:25:26]  *** The last 200 lines of the pilot log: ***
[2026-03-04 09:25:26] 2026-03-04 08:24:55,987 | INFO     | zombie collector waiting for pid 1333968
[2026-03-04 09:25:26] 2026-03-04 08:24:55,987 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-04 09:25:26] 2026-03-04 08:24:55,987 | INFO     | collected zombie processes
[2026-03-04 09:25:26] 2026-03-04 08:24:55,987 | INFO     | will attempt to kill all subprocesses of pid=1333968
[2026-03-04 09:25:26] 2026-03-04 08:24:56,028 | INFO     | process IDs to be killed: [1333968] (in reverse order)
[2026-03-04 09:25:26] 2026-03-04 08:24:56,053 | WARNING  | found no corresponding commands to process id(s)
[2026-03-04 09:25:26] 2026-03-04 08:24:56,053 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-04 09:25:26] 2026-03-04 08:24:56,055 | INFO     | did not find any defunct processes belonging to 1333968
[2026-03-04 09:25:26] 2026-03-04 08:24:56,056 | INFO     | did not find any defunct processes belonging to 1333968
[2026-03-04 09:25:26] 2026-03-04 08:24:56,056 | INFO     | ready for new job
[2026-03-04 09:25:26] 2026-03-04 08:24:56,056 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-04 09:25:26] 2026-03-04 08:24:56,057 | INFO     | **************************************
[2026-03-04 09:25:26] 2026-03-04 08:24:56,057 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-04 09:25:26] 2026-03-04 08:24:56,057 | INFO     | **************************************
[2026-03-04 09:25:26] 2026-03-04 08:24:56,057 | INFO     | 
[2026-03-04 09:25:26] 2026-03-04 08:24:56,057 | INFO     | architecture information:
[2026-03-04 09:25:26] 2026-03-04 08:24:56,057 | INFO     | executing command: cat /etc/os-release
[2026-03-04 09:25:26] 2026-03-04 08:24:56,067 | INFO     | cat /etc/os-release:
[2026-03-04 09:25:26] NAME="CentOS Linux"
[2026-03-04 09:25:26] VERSION="7 (Core)"
[2026-03-04 09:25:26] ID="centos"
[2026-03-04 09:25:26] ID_LIKE="rhel fedora"
[2026-03-04 09:25:26] VERSION_ID="7"
[2026-03-04 09:25:26] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-04 09:25:26] ANSI_COLOR="0;31"
[2026-03-04 09:25:26] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-04 09:25:26] HOME_URL="https://www.centos.org/"
[2026-03-04 09:25:26] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-04 09:25:26] 
[2026-03-04 09:25:26] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-04 09:25:26] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-04 09:25:26] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-04 09:25:26] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-04 09:25:26] 
[2026-03-04 09:25:26] 2026-03-04 08:24:56,067 | INFO     | **************************************
[2026-03-04 09:25:26] 2026-03-04 08:24:56,568 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-04 09:25:26] 2026-03-04 08:24:56,581 | INFO     | sufficient remaining disk space (375872552960 B)
[2026-03-04 09:25:26] 2026-03-04 08:24:56,582 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-04 09:25:26] 2026-03-04 08:24:56,582 | INFO     | current server update state: UPDATING_FINAL
[2026-03-04 09:25:26] 2026-03-04 08:24:56,582 | INFO     | update_server=False
[2026-03-04 09:25:26] 2026-03-04 08:24:56,582 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-04 09:25:26] 2026-03-04 08:24:56,582 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-04 09:25:26] 2026-03-04 08:24:56,582 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-04 09:25:26] 2026-03-04 08:24:56,903 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-04 09:25:26] 2026-03-04 08:24:56,903 | INFO     | aborting loop
[2026-03-04 09:25:26] 2026-03-04 08:24:57,585 | INFO     | [job] retrieve thread has finished
[2026-03-04 09:25:26] 2026-03-04 08:24:57,587 | INFO     | [job] queue monitor thread has finished
[2026-03-04 09:25:26] 2026-03-04 08:24:57,641 | INFO     | [data] copytool_in thread has finished
[2026-03-04 09:25:26] 2026-03-04 08:24:57,648 | INFO     | all data control threads have been joined
[2026-03-04 09:25:26] 2026-03-04 08:24:57,679 | INFO     | all job control threads have been joined
[2026-03-04 09:25:26] 2026-03-04 08:24:57,906 | INFO     | [job] job monitor thread has finished
[2026-03-04 09:25:26] 2026-03-04 08:24:57,982 | INFO     | all payload control threads have been joined
[2026-03-04 09:25:26] 2026-03-04 08:24:58,168 | INFO     | [payload] execute_payloads thread has finished
[2026-03-04 09:25:26] 2026-03-04 08:24:58,494 | INFO     | [payload] validate_post thread has finished
[2026-03-04 09:25:26] 2026-03-04 08:24:58,588 | INFO     | [data] copytool_out thread has finished
[2026-03-04 09:25:26] 2026-03-04 08:24:58,652 | INFO     | [data] control thread has finished
[2026-03-04 09:25:26] 2026-03-04 08:24:58,685 | INFO     | [job] control thread has finished
[2026-03-04 09:25:26] 2026-03-04 08:24:58,826 | INFO     | [job] validate thread has finished
[2026-03-04 09:25:26] 2026-03-04 08:24:58,834 | INFO     | [payload] failed_post thread has finished
[2026-03-04 09:25:26] 2026-03-04 08:24:58,948 | INFO     | [job] create_data_payload thread has finished
[2026-03-04 09:25:26] 2026-03-04 08:24:58,988 | INFO     | [payload] control thread has finished
[2026-03-04 09:25:26] 2026-03-04 08:24:59,016 | INFO     | [payload] validate_pre thread has finished
[2026-03-04 09:25:26] 2026-03-04 08:24:59,389 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-04 09:25:26] 2026-03-04 08:25:03,393 | INFO     | [data] queue_monitor thread has finished
[2026-03-04 09:25:26] 2026-03-04 08:25:04,311 | INFO     | [monitor] cgroup control has ended
[2026-03-04 09:25:26] 2026-03-04 08:25:07,063 | INFO     | job.realtimelogging is not enabled
[2026-03-04 09:25:26] 2026-03-04 08:25:08,069 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-04 09:25:26] 2026-03-04 08:25:09,540 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140239358043968)>', '<ExcThread(monitor, started 140238550701824)>']
[2026-03-04 09:25:26] 2026-03-04 08:25:14,556 | INFO     | all workflow threads have been joined
[2026-03-04 09:25:26] 2026-03-04 08:25:14,556 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-04 09:25:26] 2026-03-04 08:25:14,557 | INFO     | traces error code: 0
[2026-03-04 09:25:26] 2026-03-04 08:25:14,557 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-04 09:25:26] 2026-03-04 08:25:26,705 | INFO     | PID=1329526 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-04 09:25:26] 2026-03-04 08:25:26,706 | INFO     | found 0 job(s) in 20 queues
[2026-03-04 09:25:26] 2026-03-04 08:25:26,706 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-04 09:25:26] 2026-03-04 08:25:26,706 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-04 09:25:26] 2026-03-04 08:25:26,706 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-04 09:25:26] 2026-03-04 08:25:26,706 | INFO     | [monitor] control thread has ended
[2026-03-04 09:25:26] 2026-03-04 08:25:26,751 [wrapper] ==== pilot stdout END ====
[2026-03-04 09:25:26] 2026-03-04 08:25:26,754 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-04 09:25:26] 2026-03-04 08:25:26,757 [wrapper] pilotpid: 1329526
[2026-03-04 09:25:26] 2026-03-04 08:25:26,759 [wrapper] Pilot exit status: 0
[2026-03-04 09:25:26] 2026-03-04 08:25:26,767 [wrapper] pandaids: 7038488324
[2026-03-04 09:25:26] 2026-03-04 08:25:26,784 [wrapper] cleanup supervisor_pilot 1339217 1329527
[2026-03-04 09:25:26] 2026-03-04 08:25:26,786 [wrapper] Test setup, not cleaning
[2026-03-04 09:25:26] 2026-03-04 08:25:26,789 [wrapper] apfmon messages muted
[2026-03-04 09:25:26] 2026-03-04 08:25:26,791 [wrapper] ==== wrapper stdout END ====
[2026-03-04 09:25:26] 2026-03-04 08:25:26,794 [wrapper] ==== wrapper stderr END ====
[2026-03-04 09:25:26]  *** Error codes and diagnostics ***
[2026-03-04 09:25:26]     "exeErrorCode": 0,
[2026-03-04 09:25:26]     "exeErrorDiag": "",
[2026-03-04 09:25:26]     "pilotErrorCode": 0,
[2026-03-04 09:25:26]     "pilotErrorDiag": "",
[2026-03-04 09:25:26]  *** Listing of results directory ***
[2026-03-04 09:25:26] total 617332
[2026-03-04 09:25:26] -rw-r--r-- 1 boinc boinc      5111 Mar  3 14:54 queuedata.json
[2026-03-04 09:25:26] -rw-r--r-- 1 boinc boinc    584627 Mar  3 14:54 pilot3.tar.gz
[2026-03-04 09:25:26] -rwx------ 1 boinc boinc     36322 Mar  3 14:55 runpilot2-wrapper.sh
[2026-03-04 09:25:26] -rw-r--r-- 1 boinc boinc       100 Mar  4 08:08 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-04 09:25:26] -rwxr-xr-x 1 boinc boinc      7986 Mar  4 08:08 run_atlas
[2026-03-04 09:25:26] -rw-r--r-- 1 boinc boinc       105 Mar  4 08:08 job.xml
[2026-03-04 09:25:26] -rw-r--r-- 2 boinc boinc 441142725 Mar  4 08:08 EVNT.46701403._000016.pool.root.1
[2026-03-04 09:25:26] -rw-r--r-- 2 boinc boinc    597935 Mar  4 08:08 input.tar.gz
[2026-03-04 09:25:26] -rw-r--r-- 2 boinc boinc     15845 Mar  4 08:08 start_atlas.sh
[2026-03-04 09:25:26] drwxrwx--x 2 boinc boinc      4096 Mar  4 08:08 shared
[2026-03-04 09:25:26] -rw-r--r-- 1 boinc boinc         0 Mar  4 08:08 boinc_setup_complete
[2026-03-04 09:25:26] -rw-r--r-- 1 boinc boinc      6449 Mar  4 08:08 init_data.xml
[2026-03-04 09:25:26] -rw-r--r-- 1 boinc boinc         0 Mar  4 08:08 boinc_lockfile
[2026-03-04 09:25:26] -rw-r--r-- 1 boinc boinc      2558 Mar  4 08:08 pandaJob.out
[2026-03-04 09:25:26] -rw------- 1 boinc boinc    997749 Mar  4 08:08 agis_schedconf.cvmfs.json
[2026-03-04 09:25:26] -rw------- 1 boinc boinc   1516092 Mar  4 08:08 agis_ddmendpoints.agis.ALL.json
[2026-03-04 09:25:26] -rw------- 1 boinc boinc       417 Mar  4 08:08 workernode_map.json
[2026-03-04 09:25:26] drwx------ 5 boinc boinc      4096 Mar  4 08:08 pilot3
[2026-03-04 09:25:26] -rw------- 1 boinc boinc 185247008 Mar  4 09:24 HITS.48955006._000764.pool.root.1
[2026-03-04 09:25:26] -rw-r--r-- 1 boinc boinc       530 Mar  4 09:24 boinc_task_state.xml
[2026-03-04 09:25:26] -rw------- 1 boinc boinc      1016 Mar  4 09:24 memory_monitor_summary.json
[2026-03-04 09:25:26] -rw------- 1 boinc boinc    250163 Mar  4 09:24 log.48955006._000764.job.log.tgz.1
[2026-03-04 09:25:26] -rw------- 1 boinc boinc      6288 Mar  4 09:24 heartbeat.json
[2026-03-04 09:25:26] -rw-r--r-- 1 boinc boinc        27 Mar  4 09:25 wrapper_checkpoint.txt
[2026-03-04 09:25:26] -rw-r--r-- 1 boinc boinc      8192 Mar  4 09:25 boinc_mmap_file
[2026-03-04 09:25:26] -rw------- 1 boinc boinc       747 Mar  4 09:25 pilotlog.txt
[2026-03-04 09:25:26] -rw------- 1 boinc boinc        95 Mar  4 09:25 pilot_heartbeat.json
[2026-03-04 09:25:26] -rw------- 1 boinc boinc    671737 Mar  4 09:25 log.48955006._000764.job.log.1
[2026-03-04 09:25:26] -rw------- 1 boinc boinc       357 Mar  4 09:25 output.list
[2026-03-04 09:25:26] -rw-r--r-- 1 boinc boinc       620 Mar  4 09:25 runtime_log
[2026-03-04 09:25:26] -rw------- 1 boinc boinc    942080 Mar  4 09:25 result.tar.gz
[2026-03-04 09:25:26] -rw-r--r-- 1 boinc boinc      8911 Mar  4 09:25 runtime_log.err
[2026-03-04 09:25:26] -rw------- 1 boinc boinc       660 Mar  4 09:25 ewKLDmROfH9n9Rq4apOajLDm4fhM0noT9bVooX4SDmKhELDmn5mWvn.diag
[2026-03-04 09:25:26] -rw-r--r-- 1 boinc boinc     10607 Mar  4 09:25 stderr.txt
[2026-03-04 09:25:26] HITS file was successfully produced:
[2026-03-04 09:25:26] -rw------- 1 boinc boinc 185247008 Mar  4 09:24 shared/HITS.pool.root.1
[2026-03-04 09:25:26]  *** Contents of shared directory: ***
[2026-03-04 09:25:26] total 613236
[2026-03-04 09:25:26] -rw-r--r-- 2 boinc boinc 441142725 Mar  4 08:08 ATLAS.root_0
[2026-03-04 09:25:26] -rw-r--r-- 2 boinc boinc    597935 Mar  4 08:08 input.tar.gz
[2026-03-04 09:25:26] -rw-r--r-- 2 boinc boinc     15845 Mar  4 08:08 start_atlas.sh
[2026-03-04 09:25:26] -rw------- 1 boinc boinc 185247008 Mar  4 09:24 HITS.pool.root.1
[2026-03-04 09:25:26] -rw------- 1 boinc boinc    942080 Mar  4 09:25 result.tar.gz
09:25:28 (1325475): run_atlas exited; CPU time 12950.669501
09:25:28 (1325475): called boinc_finish(0)

</stderr_txt>
]]>

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