Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
04:15:29 (1536321): wrapper (7.7.26015): starting
04:15:29 (1536321): wrapper: running run_atlas (--nthreads 4)
[2026-03-04 04:15:29] Arguments: --nthreads 4
[2026-03-04 04:15:29] Threads: 4
[2026-03-04 04:15:29] Checking for CVMFS
[2026-03-04 04:15:29] No cvmfs_config command found, will try listing directly
[2026-03-04 04:15:29] CVMFS is ok
[2026-03-04 04:15:29] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-04 04:15:29] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-04 04:15:29] Further information can be found at the LHC@home message board.
[2026-03-04 04:15:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-04 04:15:29] Checking for apptainer binary...
[2026-03-04 04:15:29] which: no apptainer in ((null))
[2026-03-04 04:15:29] apptainer is not installed, using version from CVMFS
[2026-03-04 04:15:29] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-04 04:15:30] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot68/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut15.grid.cesnet.cz
[2026-03-04 04:15:30] apptainer works
[2026-03-04 04:15:30] Set ATHENA_PROC_NUMBER=4
[2026-03-04 04:15:30] Set ATHENA_CORE_NUMBER=4
[2026-03-04 04:15:30] Starting ATLAS job with PandaID=7036391801
[2026-03-04 04:15:30] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot68/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-04 07:20:11]  *** The last 200 lines of the pilot log: ***
[2026-03-04 07:20:11] 2026-03-04 06:19:26,278 | INFO     | mean y: 2333675.690607735
[2026-03-04 07:20:11] 2026-03-04 06:19:26,278 | INFO     | intersect: 8324253659.951423
[2026-03-04 07:20:11] 2026-03-04 06:19:26,278 | INFO     | chi2: 2.0600317826656305
[2026-03-04 07:20:11] 2026-03-04 06:19:26,279 | INFO     | sum of square deviations: 1690450300.0
[2026-03-04 07:20:11] 2026-03-04 06:19:26,280 | INFO     | sum of deviations: 2704059026.4999986
[2026-03-04 07:20:11] 2026-03-04 06:19:26,280 | INFO     | mean x: 1772599511.5
[2026-03-04 07:20:11] 2026-03-04 06:19:26,280 | INFO     | mean y: 2345083.7329545454
[2026-03-04 07:20:11] 2026-03-04 06:19:26,280 | INFO     | intersect: -2833120537.1380424
[2026-03-04 07:20:11] 2026-03-04 06:19:26,280 | INFO     | chi2: 1.2948206583478548
[2026-03-04 07:20:11] 2026-03-04 06:19:26,281 | INFO     | current chi2=1.2948206583478548 (change=37.14559798332875 %)
[2026-03-04 07:20:11] 2026-03-04 06:19:26,281 | INFO     | sum of square deviations: 1550429070.0
[2026-03-04 07:20:11] 2026-03-04 06:19:26,282 | INFO     | sum of deviations: 2777362817.9999995
[2026-03-04 07:20:11] 2026-03-04 06:19:26,282 | INFO     | mean x: 1772599359.0
[2026-03-04 07:20:11] 2026-03-04 06:19:26,282 | INFO     | mean y: 2345163.485380117
[2026-03-04 07:20:11] 2026-03-04 06:19:26,282 | INFO     | intersect: -3173002645.813134
[2026-03-04 07:20:11] 2026-03-04 06:19:26,283 | INFO     | chi2: 1.295415044130874
[2026-03-04 07:20:11] 2026-03-04 06:19:26,283 | INFO     | current chi2=1.295415044130874 (change=-0.04590487332645019 %)
[2026-03-04 07:20:11] 2026-03-04 06:19:26,283 | INFO     | right removable region: 170
[2026-03-04 07:20:11] 2026-03-04 06:19:26,283 | INFO     | sum of square deviations: 1690450300.0
[2026-03-04 07:20:11] 2026-03-04 06:19:26,284 | INFO     | sum of deviations: -28926573137.0
[2026-03-04 07:20:11] 2026-03-04 06:19:26,284 | INFO     | mean x: 1772599816.5
[2026-03-04 07:20:11] 2026-03-04 06:19:26,284 | INFO     | mean y: 2354205.1818181816
[2026-03-04 07:20:11] 2026-03-04 06:19:26,284 | INFO     | intersect: 30334649827.608593
[2026-03-04 07:20:11] 2026-03-04 06:19:26,285 | INFO     | chi2: 0.8150431111854148
[2026-03-04 07:20:11] 2026-03-04 06:19:26,285 | INFO     | current chi2=0.8150431111854148 (change=60.43541084930403 %)
[2026-03-04 07:20:11] 2026-03-04 06:19:26,285 | INFO     | sum of square deviations: 1550429070.0
[2026-03-04 07:20:11] 2026-03-04 06:19:26,286 | INFO     | sum of deviations: -25015668302.999992
[2026-03-04 07:20:11] 2026-03-04 06:19:26,286 | INFO     | mean x: 1772599969.0
[2026-03-04 07:20:11] 2026-03-04 06:19:26,286 | INFO     | mean y: 2349937.83625731
[2026-03-04 07:20:11] 2026-03-04 06:19:26,286 | INFO     | intersect: 28602673368.570225
[2026-03-04 07:20:11] 2026-03-04 06:19:26,287 | INFO     | chi2: 0.8094932508800611
[2026-03-04 07:20:11] 2026-03-04 06:19:26,287 | INFO     | current chi2=0.8094932508800611 (change=0.6809284354642214 %)
[2026-03-04 07:20:11] 2026-03-04 06:19:26,287 | INFO     | left removable region: 20
[2026-03-04 07:20:11] 2026-03-04 06:19:26,287 | INFO     | sum of square deviations: 1046484737.5
[2026-03-04 07:20:11] 2026-03-04 06:19:26,288 | INFO     | sum of deviations: -7878416813.999999
[2026-03-04 07:20:11] 2026-03-04 06:19:26,288 | INFO     | mean x: 1772599938.5
[2026-03-04 07:20:11] 2026-03-04 06:19:26,288 | INFO     | mean y: 2356022.8666666667
[2026-03-04 07:20:11] 2026-03-04 06:19:26,288 | INFO     | intersect: 13347300922.241049
[2026-03-04 07:20:11] 2026-03-04 06:19:26,289 | INFO     | chi2: 0.00911231382191964
[2026-03-04 07:20:11] 2026-03-04 06:19:26,289 | INFO     | current memory leak: -7.53 B/s (using 150 data points, chi2=0.01)
[2026-03-04 07:20:11] 2026-03-04 06:19:26,289 | INFO     | could have reported an average CPU frequency of 2761 MHz (10 samples)
[2026-03-04 07:20:11] 2026-03-04 06:19:26,289 | INFO     | ..............................
[2026-03-04 07:20:11] 2026-03-04 06:19:26,290 | INFO     | . Timing measurements:
[2026-03-04 07:20:11] 2026-03-04 06:19:26,290 | INFO     | . get job = 0 s
[2026-03-04 07:20:11] 2026-03-04 06:19:26,290 | INFO     | . initial setup = 7 s
[2026-03-04 07:20:11] 2026-03-04 06:19:26,290 | INFO     | . payload setup = 8 s
[2026-03-04 07:20:11] 2026-03-04 06:19:26,290 | INFO     | . stage-in = 0 s
[2026-03-04 07:20:11] 2026-03-04 06:19:26,290 | INFO     | . payload execution = 10990 s
[2026-03-04 07:20:11] 2026-03-04 06:19:26,290 | INFO     | . stage-out = 0 s
[2026-03-04 07:20:11] 2026-03-04 06:19:26,290 | INFO     | . log creation = 0 s
[2026-03-04 07:20:11] 2026-03-04 06:19:26,290 | INFO     | ..............................
[2026-03-04 07:20:11] 2026-03-04 06:19:26,381 | INFO     | 
[2026-03-04 07:20:11] 2026-03-04 06:19:26,382 | INFO     | job summary report
[2026-03-04 07:20:11] 2026-03-04 06:19:26,382 | INFO     | --------------------------------------------------
[2026-03-04 07:20:11] 2026-03-04 06:19:26,382 | INFO     | PanDA job id: 7036391801
[2026-03-04 07:20:11] 2026-03-04 06:19:26,382 | INFO     | task id: 48851348
[2026-03-04 07:20:11] 2026-03-04 06:19:26,382 | INFO     | errors: (none)
[2026-03-04 07:20:11] 2026-03-04 06:19:26,382 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-04 07:20:11] 2026-03-04 06:19:26,382 | INFO     | pilot state: finished 
[2026-03-04 07:20:11] 2026-03-04 06:19:26,382 | INFO     | transexitcode: 0
[2026-03-04 07:20:11] 2026-03-04 06:19:26,382 | INFO     | exeerrorcode: 0
[2026-03-04 07:20:11] 2026-03-04 06:19:26,383 | INFO     | exeerrordiag: 
[2026-03-04 07:20:11] 2026-03-04 06:19:26,383 | INFO     | exitcode: 0
[2026-03-04 07:20:11] 2026-03-04 06:19:26,383 | INFO     | exitmsg: OK
[2026-03-04 07:20:11] 2026-03-04 06:19:26,383 | INFO     | cpuconsumptiontime: 42389 s
[2026-03-04 07:20:11] 2026-03-04 06:19:26,383 | INFO     | nevents: 400
[2026-03-04 07:20:11] 2026-03-04 06:19:26,383 | INFO     | neventsw: 0
[2026-03-04 07:20:11] 2026-03-04 06:19:26,383 | INFO     | pid: 1545357
[2026-03-04 07:20:11] 2026-03-04 06:19:26,383 | INFO     | pgrp: 1545357
[2026-03-04 07:20:11] 2026-03-04 06:19:26,383 | INFO     | corecount: 4
[2026-03-04 07:20:11] 2026-03-04 06:19:26,383 | INFO     | event service: False
[2026-03-04 07:20:11] 2026-03-04 06:19:26,383 | INFO     | sizes: {0: 2287166, 11: 2287166, 11001: 2316514, 11002: 2316513, 11003: 2325589, 11006: 2325967}
[2026-03-04 07:20:11] 2026-03-04 06:19:26,384 | INFO     | --------------------------------------------------
[2026-03-04 07:20:11] 2026-03-04 06:19:26,384 | INFO     | 
[2026-03-04 07:20:11] 2026-03-04 06:19:26,384 | INFO     | executing command: ls -lF /scratch/boinc/var/slot68/slots/0
[2026-03-04 07:20:11] 2026-03-04 06:19:26,411 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-04 07:20:11] 2026-03-04 06:19:26,411 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-04 07:20:11] 2026-03-04 06:19:26,411 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-04 07:20:11] 2026-03-04 06:19:26,411 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-04 07:20:11] 2026-03-04 06:19:26,411 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-04 07:20:11] 2026-03-04 06:19:26,411 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-04 07:20:11] 2026-03-04 06:19:26,411 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-04 07:20:11] 2026-03-04 06:19:26,412 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-04 07:20:11] 2026-03-04 06:19:26,412 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-04 07:20:11] 2026-03-04 06:19:26,412 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-04 07:20:11] 2026-03-04 06:19:26,412 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-04 07:20:11] 2026-03-04 06:19:26,412 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-04 07:20:11] 2026-03-04 06:19:26,412 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-04 07:20:11] 2026-03-04 06:19:26,412 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-04 07:20:11] 2026-03-04 06:19:26,412 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-04 07:20:11] 2026-03-04 06:19:26,412 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-04 07:20:11] 2026-03-04 06:19:26,412 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-04 07:20:11] 2026-03-04 06:19:26,412 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-04 07:20:11] 2026-03-04 06:19:26,413 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-04 07:20:11] 2026-03-04 06:19:26,413 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-04 07:20:11] 2026-03-04 06:19:26,413 | INFO     | job 7036391801 has completed (purged errors)
[2026-03-04 07:20:11] 2026-03-04 06:19:26,413 | INFO     | overall cleanup function is called
[2026-03-04 07:20:11] 2026-03-04 06:19:26,688 | WARNING  | process 1545357 can no longer be monitored (due to stat problems) - aborting
[2026-03-04 07:20:11] 2026-03-04 06:19:26,957 | INFO     | using path: /scratch/boinc/var/slot68/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-04 07:20:11] 2026-03-04 06:19:26,958 | INFO     | using path: /scratch/boinc/var/slot68/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-04 07:20:11] 2026-03-04 06:19:26,958 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-03-04 07:20:11] 2026-03-04 06:19:26,958 | WARNING  | maxPSS not found in memory monitor output
[2026-03-04 07:20:11] 2026-03-04 06:19:26,958 | INFO     | skipping file size check of payload stdout file (/scratch/boinc/var/slot68/slots/0/PanDA_Pilot-7036391801/payload.stdout) since it has not been created yet
[2026-03-04 07:20:11] 2026-03-04 06:19:26,958 | INFO     | executing command: df -mP /scratch/boinc/var/slot68/slots/0
[2026-03-04 07:20:11] 2026-03-04 06:19:26,973 | INFO     | sufficient remaining disk space (3319882842112 B)
[2026-03-04 07:20:11] 2026-03-04 06:19:26,973 | WARNING  | skipping size check of workdir since it has not been created yet
[2026-03-04 07:20:11] 2026-03-04 06:19:26,974 | INFO     | output file size check: skipping output file /scratch/boinc/var/slot68/slots/0/PanDA_Pilot-7036391801/HITS.48851348._000031.pool.root.1 since it does not exist
[2026-03-04 07:20:11] 2026-03-04 06:19:27,347 | INFO     | number of running child processes to parent process 1545357: 1
[2026-03-04 07:20:11] 2026-03-04 06:19:27,348 | INFO     | maximum number of monitored processes: 6
[2026-03-04 07:20:11] 2026-03-04 06:19:27,348 | INFO     | aborting job monitoring since job object (job id=7036391801) has expired
[2026-03-04 07:20:11] 2026-03-04 06:19:27,423 | INFO     | --- collectZombieJob: --- 10, [1545357]
[2026-03-04 07:20:11] 2026-03-04 06:19:27,423 | INFO     | zombie collector waiting for pid 1545357
[2026-03-04 07:20:11] 2026-03-04 06:19:27,423 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-04 07:20:11] 2026-03-04 06:19:27,424 | INFO     | collected zombie processes
[2026-03-04 07:20:11] 2026-03-04 06:19:27,424 | INFO     | will attempt to kill all subprocesses of pid=1545357
[2026-03-04 07:20:11] 2026-03-04 06:19:27,927 | INFO     | process IDs to be killed: [1545357] (in reverse order)
[2026-03-04 07:20:11] 2026-03-04 06:19:28,158 | WARNING  | found no corresponding commands to process id(s)
[2026-03-04 07:20:11] 2026-03-04 06:19:28,158 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-04 07:20:11] 2026-03-04 06:19:28,178 | INFO     | did not find any defunct processes belonging to 1545357
[2026-03-04 07:20:11] 2026-03-04 06:19:28,193 | INFO     | did not find any defunct processes belonging to 1545357
[2026-03-04 07:20:11] 2026-03-04 06:19:28,194 | INFO     | ready for new job
[2026-03-04 07:20:11] 2026-03-04 06:19:28,194 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-04 07:20:11] 2026-03-04 06:19:28,196 | INFO     | **************************************
[2026-03-04 07:20:11] 2026-03-04 06:19:28,196 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-04 07:20:11] 2026-03-04 06:19:28,196 | INFO     | **************************************
[2026-03-04 07:20:11] 2026-03-04 06:19:28,197 | INFO     | 
[2026-03-04 07:20:11] 2026-03-04 06:19:28,204 | INFO     | architecture information:
[2026-03-04 07:20:11] 2026-03-04 06:19:28,205 | INFO     | executing command: cat /etc/os-release
[2026-03-04 07:20:11] 2026-03-04 06:19:28,229 | INFO     | cat /etc/os-release:
[2026-03-04 07:20:11] NAME="CentOS Linux"
[2026-03-04 07:20:11] VERSION="7 (Core)"
[2026-03-04 07:20:11] ID="centos"
[2026-03-04 07:20:11] ID_LIKE="rhel fedora"
[2026-03-04 07:20:11] VERSION_ID="7"
[2026-03-04 07:20:11] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-04 07:20:11] ANSI_COLOR="0;31"
[2026-03-04 07:20:11] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-04 07:20:11] HOME_URL="https://www.centos.org/"
[2026-03-04 07:20:11] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-04 07:20:11] 
[2026-03-04 07:20:11] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-04 07:20:11] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-04 07:20:11] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-04 07:20:11] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-04 07:20:11] 
[2026-03-04 07:20:11] 2026-03-04 06:19:28,229 | INFO     | **************************************
[2026-03-04 07:20:11] 2026-03-04 06:19:28,733 | INFO     | executing command: df -mP /scratch/boinc/var/slot68/slots/0
[2026-03-04 07:20:11] 2026-03-04 06:19:28,758 | INFO     | sufficient remaining disk space (3319884939264 B)
[2026-03-04 07:20:11] 2026-03-04 06:19:28,758 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-04 07:20:11] 2026-03-04 06:19:28,758 | INFO     | current server update state: UPDATING_FINAL
[2026-03-04 07:20:11] 2026-03-04 06:19:28,758 | INFO     | update_server=False
[2026-03-04 07:20:11] 2026-03-04 06:19:28,758 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-04 07:20:11] 2026-03-04 06:19:28,759 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-04 07:20:11] 2026-03-04 06:19:28,759 | INFO     | aborting loop
[2026-03-04 07:20:11] 2026-03-04 06:19:28,959 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-04 07:20:11] 2026-03-04 06:19:29,547 | INFO     | all data control threads have been joined
[2026-03-04 07:20:11] 2026-03-04 06:19:29,547 | INFO     | all payload control threads have been joined
[2026-03-04 07:20:11] 2026-03-04 06:19:29,764 | INFO     | [job] job monitor thread has finished
[2026-03-04 07:20:11] 2026-03-04 06:19:29,764 | INFO     | [job] retrieve thread has finished
[2026-03-04 07:20:11] 2026-03-04 06:19:29,776 | INFO     | all job control threads have been joined
[2026-03-04 07:20:11] 2026-03-04 06:19:30,163 | INFO     | [job] validate thread has finished
[2026-03-04 07:20:11] 2026-03-04 06:19:30,231 | INFO     | [payload] execute_payloads thread has finished
[2026-03-04 07:20:11] 2026-03-04 06:19:30,369 | INFO     | [job] create_data_payload thread has finished
[2026-03-04 07:20:11] 2026-03-04 06:19:30,552 | INFO     | [payload] control thread has finished
[2026-03-04 07:20:11] 2026-03-04 06:19:30,552 | INFO     | [data] control thread has finished
[2026-03-04 07:20:11] 2026-03-04 06:19:30,648 | INFO     | [payload] validate_pre thread has finished
[2026-03-04 07:20:11] 2026-03-04 06:19:30,777 | INFO     | [job] control thread has finished
[2026-03-04 07:20:11] 2026-03-04 06:19:30,803 | INFO     | [payload] validate_post thread has finished
[2026-03-04 07:20:11] 2026-03-04 06:19:30,919 | INFO     | [data] copytool_in thread has finished
[2026-03-04 07:20:11] 2026-03-04 06:19:30,964 | INFO     | [data] copytool_out thread has finished
[2026-03-04 07:20:11] 2026-03-04 06:19:31,331 | INFO     | [payload] failed_post thread has finished
[2026-03-04 07:20:11] 2026-03-04 06:19:31,391 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-04 07:20:11] 2026-03-04 06:19:32,246 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-04 07:20:11] 2026-03-04 06:19:32,397 | INFO     | [job] queue monitor thread has finished
[2026-03-04 07:20:11] 2026-03-04 06:19:36,252 | INFO     | [data] queue_monitor thread has finished
[2026-03-04 07:20:11] 2026-03-04 06:19:39,071 | INFO     | job.realtimelogging is not enabled
[2026-03-04 07:20:11] 2026-03-04 06:19:40,077 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-04 07:20:11] 2026-03-04 06:19:59,636 | INFO     | PID=1540327 has CPU usage=9.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-04 07:20:11] 2026-03-04 06:19:59,637 | INFO     | .. there are 17 such processes running
[2026-03-04 07:20:11] 2026-03-04 06:19:59,637 | INFO     | found 0 job(s) in 20 queues
[2026-03-04 07:20:11] 2026-03-04 06:19:59,637 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-04 07:20:11] 2026-03-04 06:19:59,637 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-04 07:20:11] 2026-03-04 06:20:04,798 | INFO     | [monitor] cgroup control has ended
[2026-03-04 07:20:11] 2026-03-04 06:20:06,484 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22383293216576)>', '<ExcThread(monitor, started 22383055615744)>']
[2026-03-04 07:20:11] 2026-03-04 06:20:06,670 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-04 07:20:11] 2026-03-04 06:20:06,670 | INFO     | [monitor] control thread has ended
[2026-03-04 07:20:11] 2026-03-04 06:20:11,509 | INFO     | all workflow threads have been joined
[2026-03-04 07:20:11] 2026-03-04 06:20:11,509 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-04 07:20:11] 2026-03-04 06:20:11,509 | INFO     | traces error code: 0
[2026-03-04 07:20:11] 2026-03-04 06:20:11,509 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-04 07:20:11] 2026-03-04 06:20:11,618 [wrapper] ==== pilot stdout END ====
[2026-03-04 07:20:11] 2026-03-04 06:20:11,621 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-04 07:20:11] 2026-03-04 06:20:11,625 [wrapper] pilotpid: 1540327
[2026-03-04 07:20:11] 2026-03-04 06:20:11,628 [wrapper] Pilot exit status: 0
[2026-03-04 07:20:11] 2026-03-04 06:20:11,641 [wrapper] pandaids: 7036391801
[2026-03-04 07:20:11] 2026-03-04 06:20:11,792 [wrapper] cleanup supervisor_pilot 1862058 1540328
[2026-03-04 07:20:11] 2026-03-04 06:20:11,796 [wrapper] Test setup, not cleaning
[2026-03-04 07:20:11] 2026-03-04 06:20:11,799 [wrapper] apfmon messages muted
[2026-03-04 07:20:11] 2026-03-04 06:20:11,803 [wrapper] ==== wrapper stdout END ====
[2026-03-04 07:20:11] 2026-03-04 06:20:11,806 [wrapper] ==== wrapper stderr END ====
[2026-03-04 07:20:11]  *** Error codes and diagnostics ***
[2026-03-04 07:20:11]     "exeErrorCode": 0,
[2026-03-04 07:20:11]     "exeErrorDiag": "",
[2026-03-04 07:20:11]     "pilotErrorCode": 0,
[2026-03-04 07:20:11]     "pilotErrorDiag": "",
[2026-03-04 07:20:11]  *** Listing of results directory ***
[2026-03-04 07:20:11] total 414572
[2026-03-04 07:20:11] -rw-r--r-- 1 boinc boinc    584627 Mar  3 18:25 pilot3.tar.gz
[2026-03-04 07:20:11] -rw-r--r-- 1 boinc boinc      5111 Mar  3 18:28 queuedata.json
[2026-03-04 07:20:11] -rwx------ 1 boinc boinc     36322 Mar  3 18:28 runpilot2-wrapper.sh
[2026-03-04 07:20:11] -rw-r--r-- 1 boinc boinc       100 Mar  4 04:15 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-04 07:20:11] -rwxr-xr-x 1 boinc boinc      7986 Mar  4 04:15 run_atlas
[2026-03-04 07:20:11] -rw-r--r-- 1 boinc boinc       105 Mar  4 04:15 job.xml
[2026-03-04 07:20:11] -rw-r--r-- 1 boinc boinc      6697 Mar  4 04:15 init_data.xml
[2026-03-04 07:20:11] -rw-r--r-- 2 boinc boinc 224441480 Mar  4 04:15 EVNT.48460009._000002.pool.root.1
[2026-03-04 07:20:11] -rw-r--r-- 2 boinc boinc     15845 Mar  4 04:15 start_atlas.sh
[2026-03-04 07:20:11] drwxrwx--x 2 boinc boinc      4096 Mar  4 04:15 shared
[2026-03-04 07:20:11] -rw-r--r-- 2 boinc boinc    597965 Mar  4 04:15 input.tar.gz
[2026-03-04 07:20:11] -rw-r--r-- 1 boinc boinc         0 Mar  4 04:15 boinc_lockfile
[2026-03-04 07:20:11] -rw-r--r-- 1 boinc boinc      2624 Mar  4 04:15 pandaJob.out
[2026-03-04 07:20:11] -rw------- 1 boinc boinc    997749 Mar  4 04:15 agis_schedconf.cvmfs.json
[2026-03-04 07:20:11] -rw------- 1 boinc boinc       443 Mar  4 04:15 workernode_map.json
[2026-03-04 07:20:11] drwx------ 5 boinc boinc      4096 Mar  4 04:15 pilot3
[2026-03-04 07:20:11] -rw------- 1 boinc boinc 192370026 Mar  4 07:18 HITS.48851348._000031.pool.root.1
[2026-03-04 07:20:11] -rw------- 1 boinc boinc        95 Mar  4 07:19 pilot_heartbeat.json
[2026-03-04 07:20:11] -rw-r--r-- 1 boinc boinc       530 Mar  4 07:19 boinc_task_state.xml
[2026-03-04 07:20:11] -rw------- 1 boinc boinc      1040 Mar  4 07:19 memory_monitor_summary.json
[2026-03-04 07:20:11] -rw------- 1 boinc boinc   1516092 Mar  4 07:19 agis_ddmendpoints.agis.ALL.json
[2026-03-04 07:20:11] -rw------- 1 boinc boinc    348431 Mar  4 07:19 log.48851348._000031.job.log.tgz.1
[2026-03-04 07:20:11] -rw------- 1 boinc boinc      6343 Mar  4 07:19 heartbeat.json
[2026-03-04 07:20:11] -rw-r--r-- 1 boinc boinc      8192 Mar  4 07:20 boinc_mmap_file
[2026-03-04 07:20:11] -rw-r--r-- 1 boinc boinc        28 Mar  4 07:20 wrapper_checkpoint.txt
[2026-03-04 07:20:11] -rw------- 1 boinc boinc      4903 Mar  4 07:20 pilotlog.txt
[2026-03-04 07:20:11] -rw------- 1 boinc boinc   1540024 Mar  4 07:20 log.48851348._000031.job.log.1
[2026-03-04 07:20:11] -rw------- 1 boinc boinc       357 Mar  4 07:20 output.list
[2026-03-04 07:20:11] -rw-r--r-- 1 boinc boinc       620 Mar  4 07:20 runtime_log
[2026-03-04 07:20:11] -rw------- 1 boinc boinc   1904640 Mar  4 07:20 result.tar.gz
[2026-03-04 07:20:11] -rw-r--r-- 1 boinc boinc      9205 Mar  4 07:20 runtime_log.err
[2026-03-04 07:20:11] -rw------- 1 boinc boinc       664 Mar  4 07:20 21AODmNjiH9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmRJHLDmFyMYzn.diag
[2026-03-04 07:20:11] -rw-r--r-- 1 boinc boinc     21278 Mar  4 07:20 stderr.txt
[2026-03-04 07:20:11] HITS file was successfully produced:
[2026-03-04 07:20:11] -rw------- 1 boinc boinc 192370026 Mar  4 07:18 shared/HITS.pool.root.1
[2026-03-04 07:20:11]  *** Contents of shared directory: ***
[2026-03-04 07:20:11] total 409516
[2026-03-04 07:20:11] -rw-r--r-- 2 boinc boinc 224441480 Mar  4 04:15 ATLAS.root_0
[2026-03-04 07:20:11] -rw-r--r-- 2 boinc boinc     15845 Mar  4 04:15 start_atlas.sh
[2026-03-04 07:20:11] -rw-r--r-- 2 boinc boinc    597965 Mar  4 04:15 input.tar.gz
[2026-03-04 07:20:11] -rw------- 1 boinc boinc 192370026 Mar  4 07:18 HITS.pool.root.1
[2026-03-04 07:20:11] -rw------- 1 boinc boinc   1904640 Mar  4 07:20 result.tar.gz
07:20:13 (1536321): run_atlas exited; CPU time 42967.484418
07:20:13 (1536321): called boinc_finish(0)

</stderr_txt>
]]>

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