Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
10:59:07 (1760702): wrapper (7.7.26015): starting
10:59:07 (1760702): wrapper: running run_atlas (--nthreads 4)
[2026-03-04 10:59:07] Arguments: --nthreads 4
[2026-03-04 10:59:07] Threads: 4
[2026-03-04 10:59:07] Checking for CVMFS
[2026-03-04 10:59:07] No cvmfs_config command found, will try listing directly
[2026-03-04 10:59:07] CVMFS is ok
[2026-03-04 10:59:07] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-04 10:59:07] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-04 10:59:07] Further information can be found at the LHC@home message board.
[2026-03-04 10:59:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-04 10:59:07] Checking for apptainer binary...
[2026-03-04 10:59:07] which: no apptainer in ((null))
[2026-03-04 10:59:07] apptainer is not installed, using version from CVMFS
[2026-03-04 10:59:07] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-04 10:59:07] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot80/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut14.grid.cesnet.cz
[2026-03-04 10:59:07] apptainer works
[2026-03-04 10:59:07] Set ATHENA_PROC_NUMBER=4
[2026-03-04 10:59:07] Set ATHENA_CORE_NUMBER=4
[2026-03-04 10:59:07] Starting ATLAS job with PandaID=7036368782
[2026-03-04 10:59:07] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot80/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-04 12:38:40]  *** The last 200 lines of the pilot log: ***
[2026-03-04 12:38:40] ]
[2026-03-04 12:38:40] 2026-03-04 11:37:27,311 | INFO     | transferring file log.48700938._002769.job.log.tgz.1 from /scratch/boinc/var/slot80/slots/0/PanDA_Pilot-7036368782/log.48700938._002769.job.log.tgz.1 to /scratch/b
[2026-03-04 12:38:40] 2026-03-04 11:37:27,312 | INFO     | executing command: /usr/bin/env mv /scratch/boinc/var/slot80/slots/0/PanDA_Pilot-7036368782/log.48700938._002769.job.log.tgz.1 /scratch/boinc/var/slot80/slots/0/lo
[2026-03-04 12:38:40] 2026-03-04 11:37:27,332 | INFO     | adding to output.list: log.48700938._002769.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ed/a9/log.48700938._002769.job.log.tg
[2026-03-04 12:38:40] 2026-03-04 11:37:27,333 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-04 12:38:40] 2026-03-04 11:37:27,333 | INFO     | summary of transferred files:
[2026-03-04 12:38:40] 2026-03-04 11:37:27,333 | INFO     |  -- lfn=log.48700938._002769.job.log.tgz.1, status_code=0, status=transferred
[2026-03-04 12:38:40] 2026-03-04 11:37:27,333 | INFO     | stage-out finished correctly
[2026-03-04 12:38:40] 2026-03-04 11:37:28,028 | INFO     | PID=1767811 has CPU usage=10.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-03-04 12:38:40] 2026-03-04 11:37:28,028 | INFO     | .. there are 18 such processes running
[2026-03-04 12:38:40] 2026-03-04 11:37:29,029 | INFO     | time since job start (5883s) is within the limit (349056.0s)
[2026-03-04 12:38:40] 2026-03-04 11:37:29,952 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-04 12:38:40] 2026-03-04 11:37:31,037 | INFO     | time since job start (5885s) is within the limit (349056.0s)
[2026-03-04 12:38:40] 2026-03-04 11:37:31,992 | WARNING  | process 1778571 can no longer be monitored (due to stat problems) - aborting
[2026-03-04 12:38:40] 2026-03-04 11:37:31,994 | INFO     | using path: /scratch/boinc/var/slot80/slots/0/PanDA_Pilot-7036368782/memory_monitor_summary.json (trf name=prmon)
[2026-03-04 12:38:40] 2026-03-04 11:37:31,995 | INFO     | using path: /scratch/boinc/var/slot80/slots/0/PanDA_Pilot-7036368782/memory_monitor_summary.json (trf name=prmon)
[2026-03-04 12:38:40] 2026-03-04 11:37:31,996 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-03-04 12:38:40] 2026-03-04 11:37:31,996 | WARNING  | maxPSS not found in memory monitor output
[2026-03-04 12:38:40] 2026-03-04 11:37:31,997 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 2195033 B
[2026-03-04 12:38:40] 2026-03-04 11:37:31,997 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15369 B
[2026-03-04 12:38:40] 2026-03-04 11:37:31,997 | INFO     | executing command: df -mP /scratch/boinc/var/slot80/slots/0
[2026-03-04 12:38:40] 2026-03-04 11:37:32,019 | INFO     | sufficient remaining disk space (3312685416448 B)
[2026-03-04 12:38:40] 2026-03-04 11:37:32,020 | INFO     | work directory size check will use 5033164800 B as a max limit (20% grace limit added, divider=1)
[2026-03-04 12:38:40] 2026-03-04 11:37:32,021 | INFO     | size of work directory /scratch/boinc/var/slot80/slots/0/PanDA_Pilot-7036368782: 2500886 B (within 5033164800 B limit)
[2026-03-04 12:38:40] 2026-03-04 11:37:32,021 | INFO     | pfn file=/scratch/boinc/var/slot80/slots/0/PanDA_Pilot-7036368782/HITS.48700938._002769.pool.root.1 does not exist (skip from workdir size calculation)
[2026-03-04 12:38:40] 2026-03-04 11:37:32,021 | INFO     | total size of present files: 0 B (workdir size: 2500886 B)
[2026-03-04 12:38:40] 2026-03-04 11:37:32,021 | INFO     | output file size check: skipping output file /scratch/boinc/var/slot80/slots/0/PanDA_Pilot-7036368782/HITS.48700938._002769.pool.root.1 since it does not exist
[2026-03-04 12:38:40] 2026-03-04 11:37:32,408 | INFO     | number of running child processes to parent process 1778571: 1
[2026-03-04 12:38:40] 2026-03-04 11:37:32,410 | INFO     | maximum number of monitored processes: 6
[2026-03-04 12:38:40] 2026-03-04 11:37:32,860 | INFO     | job 7036368782 has state=finished
[2026-03-04 12:38:40] 2026-03-04 11:37:32,861 | INFO     | preparing for final server update for job 7036368782 in state='finished'
[2026-03-04 12:38:40] 2026-03-04 11:37:32,861 | INFO     | reading metadata from: /scratch/boinc/var/slot80/slots/0/PanDA_Pilot-7036368782/jobReport.json
[2026-03-04 12:38:40] 2026-03-04 11:37:32,864 | INFO     | added worker_node to metadata from /scratch/boinc/var/slot80/slots/0/workernode_map.json
[2026-03-04 12:38:40] 2026-03-04 11:37:32,864 | INFO     | this job has now completed (state=finished)
[2026-03-04 12:38:40] 2026-03-04 11:37:32,865 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-04 12:38:40] 2026-03-04 11:37:32,865 | INFO     | log transfer has been attempted: DONE
[2026-03-04 12:38:40] 2026-03-04 11:37:32,865 | INFO     | job 7036368782 has finished - writing final server update
[2026-03-04 12:38:40] 2026-03-04 11:37:32,865 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_2343428/.job.ad'
[2026-03-04 12:38:40] 2026-03-04 11:37:32,865 | INFO     | total number of processed events: 400 (read)
[2026-03-04 12:38:40] 2026-03-04 11:37:32,889 | INFO     | using path: /scratch/boinc/var/slot80/slots/0/PanDA_Pilot-7036368782/memory_monitor_summary.json (trf name=prmon)
[2026-03-04 12:38:40] 2026-03-04 11:37:32,889 | INFO     | extracted standard info from prmon json
[2026-03-04 12:38:40] 2026-03-04 11:37:32,890 | INFO     | extracted standard memory fields from prmon json
[2026-03-04 12:38:40] 2026-03-04 11:37:32,890 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-04 12:38:40] 2026-03-04 11:37:32,890 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-04 12:38:40] 2026-03-04 11:37:32,890 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-04 12:38:40] 2026-03-04 11:37:32,892 | INFO     | fitting pss+swap vs Time
[2026-03-04 12:38:40] 2026-03-04 11:37:32,893 | INFO     | sum of square deviations: 218571540.0
[2026-03-04 12:38:40] 2026-03-04 11:37:32,893 | INFO     | sum of deviations: 33879338.99999984
[2026-03-04 12:38:40] 2026-03-04 11:37:32,893 | INFO     | mean x: 1772621381.0
[2026-03-04 12:38:40] 2026-03-04 11:37:32,893 | INFO     | mean y: 2319528.0224719103
[2026-03-04 12:38:40] 2026-03-04 11:37:32,893 | INFO     | intersect: -272442870.986781
[2026-03-04 12:38:40] 2026-03-04 11:37:32,894 | INFO     | chi2: 0.0023472245259428554
[2026-03-04 12:38:40] 2026-03-04 11:37:32,894 | INFO     | current memory leak: 0.16 B/s (using 89 data points, chi2=0.00)
[2026-03-04 12:38:40] 2026-03-04 11:37:32,894 | INFO     | could have reported an average CPU frequency of 2755 MHz (7 samples)
[2026-03-04 12:38:40] 2026-03-04 11:37:32,894 | INFO     | ..............................
[2026-03-04 12:38:40] 2026-03-04 11:37:32,894 | INFO     | . Timing measurements:
[2026-03-04 12:38:40] 2026-03-04 11:37:32,894 | INFO     | . get job = 0 s
[2026-03-04 12:38:40] 2026-03-04 11:37:32,894 | INFO     | . initial setup = 7 s
[2026-03-04 12:38:40] 2026-03-04 11:37:32,895 | INFO     | . payload setup = 7 s
[2026-03-04 12:38:40] 2026-03-04 11:37:32,895 | INFO     | . stage-in = 0 s
[2026-03-04 12:38:40] 2026-03-04 11:37:32,895 | INFO     | . payload execution = 5857 s
[2026-03-04 12:38:40] 2026-03-04 11:37:32,895 | INFO     | . stage-out = 0 s
[2026-03-04 12:38:40] 2026-03-04 11:37:32,895 | INFO     | . log creation = 0 s
[2026-03-04 12:38:40] 2026-03-04 11:37:32,895 | INFO     | ..............................
[2026-03-04 12:38:40] 2026-03-04 11:37:32,988 | INFO     | 
[2026-03-04 12:38:40] 2026-03-04 11:37:32,989 | INFO     | job summary report
[2026-03-04 12:38:40] 2026-03-04 11:37:32,989 | INFO     | --------------------------------------------------
[2026-03-04 12:38:40] 2026-03-04 11:37:32,989 | INFO     | PanDA job id: 7036368782
[2026-03-04 12:38:40] 2026-03-04 11:37:32,989 | INFO     | task id: 48700938
[2026-03-04 12:38:40] 2026-03-04 11:37:32,989 | INFO     | errors: (none)
[2026-03-04 12:38:40] 2026-03-04 11:37:32,989 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-04 12:38:40] 2026-03-04 11:37:32,989 | INFO     | pilot state: finished 
[2026-03-04 12:38:40] 2026-03-04 11:37:32,989 | INFO     | transexitcode: 0
[2026-03-04 12:38:40] 2026-03-04 11:37:32,989 | INFO     | exeerrorcode: 0
[2026-03-04 12:38:40] 2026-03-04 11:37:32,989 | INFO     | exeerrordiag: 
[2026-03-04 12:38:40] 2026-03-04 11:37:32,989 | INFO     | exitcode: 0
[2026-03-04 12:38:40] 2026-03-04 11:37:32,990 | INFO     | exitmsg: OK
[2026-03-04 12:38:40] 2026-03-04 11:37:32,990 | INFO     | cpuconsumptiontime: 22253 s
[2026-03-04 12:38:40] 2026-03-04 11:37:32,990 | INFO     | nevents: 400
[2026-03-04 12:38:40] 2026-03-04 11:37:32,990 | INFO     | neventsw: 0
[2026-03-04 12:38:40] 2026-03-04 11:37:32,990 | INFO     | pid: 1778571
[2026-03-04 12:38:40] 2026-03-04 11:37:32,990 | INFO     | pgrp: 1778571
[2026-03-04 12:38:40] 2026-03-04 11:37:32,990 | INFO     | corecount: 4
[2026-03-04 12:38:40] 2026-03-04 11:37:32,990 | INFO     | event service: False
[2026-03-04 12:38:40] 2026-03-04 11:37:32,990 | INFO     | sizes: {0: 2286515, 1: 2287032, 12: 2287032, 5868: 2313831, 5869: 2322851, 5872: 2322907, 5875: 2323257}
[2026-03-04 12:38:40] 2026-03-04 11:37:32,990 | INFO     | --------------------------------------------------
[2026-03-04 12:38:40] 2026-03-04 11:37:32,990 | INFO     | 
[2026-03-04 12:38:40] 2026-03-04 11:37:32,991 | INFO     | executing command: ls -lF /scratch/boinc/var/slot80/slots/0
[2026-03-04 12:38:40] 2026-03-04 11:37:33,017 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-04 12:38:40] 2026-03-04 11:37:33,018 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-04 12:38:40] 2026-03-04 11:37:33,018 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-04 12:38:40] 2026-03-04 11:37:33,018 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-04 12:38:40] 2026-03-04 11:37:33,018 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-04 12:38:40] 2026-03-04 11:37:33,018 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-04 12:38:40] 2026-03-04 11:37:33,018 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-04 12:38:40] 2026-03-04 11:37:33,018 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-04 12:38:40] 2026-03-04 11:37:33,018 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-04 12:38:40] 2026-03-04 11:37:33,019 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-04 12:38:40] 2026-03-04 11:37:33,019 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-04 12:38:40] 2026-03-04 11:37:33,019 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-04 12:38:40] 2026-03-04 11:37:33,019 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-04 12:38:40] 2026-03-04 11:37:33,019 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-04 12:38:40] 2026-03-04 11:37:33,019 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-04 12:38:40] 2026-03-04 11:37:33,019 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-04 12:38:40] 2026-03-04 11:37:33,019 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-04 12:38:40] 2026-03-04 11:37:33,019 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-04 12:38:40] 2026-03-04 11:37:33,019 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-04 12:38:40] 2026-03-04 11:37:33,020 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-04 12:38:40] 2026-03-04 11:37:33,020 | INFO     | job 7036368782 has completed (purged errors)
[2026-03-04 12:38:40] 2026-03-04 11:37:33,023 | INFO     | overall cleanup function is called
[2026-03-04 12:38:40] 2026-03-04 11:37:34,032 | INFO     | --- collectZombieJob: --- 10, [1778571]
[2026-03-04 12:38:40] 2026-03-04 11:37:34,033 | INFO     | zombie collector waiting for pid 1778571
[2026-03-04 12:38:40] 2026-03-04 11:37:34,033 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-04 12:38:40] 2026-03-04 11:37:34,033 | INFO     | collected zombie processes
[2026-03-04 12:38:40] 2026-03-04 11:37:34,033 | INFO     | will attempt to kill all subprocesses of pid=1778571
[2026-03-04 12:38:40] 2026-03-04 11:37:34,583 | INFO     | process IDs to be killed: [1778571] (in reverse order)
[2026-03-04 12:38:40] 2026-03-04 11:37:34,742 | WARNING  | found no corresponding commands to process id(s)
[2026-03-04 12:38:40] 2026-03-04 11:37:34,742 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-04 12:38:40] 2026-03-04 11:37:34,762 | INFO     | did not find any defunct processes belonging to 1778571
[2026-03-04 12:38:40] 2026-03-04 11:37:34,776 | INFO     | did not find any defunct processes belonging to 1778571
[2026-03-04 12:38:40] 2026-03-04 11:37:34,776 | INFO     | ready for new job
[2026-03-04 12:38:40] 2026-03-04 11:37:34,777 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-04 12:38:40] 2026-03-04 11:37:34,779 | INFO     | **************************************
[2026-03-04 12:38:40] 2026-03-04 11:37:34,779 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-04 12:38:40] 2026-03-04 11:37:34,779 | INFO     | **************************************
[2026-03-04 12:38:40] 2026-03-04 11:37:34,779 | INFO     | 
[2026-03-04 12:38:40] 2026-03-04 11:37:34,787 | INFO     | architecture information:
[2026-03-04 12:38:40] 2026-03-04 11:37:34,788 | INFO     | executing command: cat /etc/os-release
[2026-03-04 12:38:40] 2026-03-04 11:37:34,806 | INFO     | cat /etc/os-release:
[2026-03-04 12:38:40] NAME="CentOS Linux"
[2026-03-04 12:38:40] VERSION="7 (Core)"
[2026-03-04 12:38:40] ID="centos"
[2026-03-04 12:38:40] ID_LIKE="rhel fedora"
[2026-03-04 12:38:40] VERSION_ID="7"
[2026-03-04 12:38:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-04 12:38:40] ANSI_COLOR="0;31"
[2026-03-04 12:38:40] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-04 12:38:40] HOME_URL="https://www.centos.org/"
[2026-03-04 12:38:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-04 12:38:40] 
[2026-03-04 12:38:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-04 12:38:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-04 12:38:40] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-04 12:38:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-04 12:38:40] 
[2026-03-04 12:38:40] 2026-03-04 11:37:34,806 | INFO     | **************************************
[2026-03-04 12:38:40] 2026-03-04 11:37:35,309 | INFO     | executing command: df -mP /scratch/boinc/var/slot80/slots/0
[2026-03-04 12:38:40] 2026-03-04 11:37:35,323 | INFO     | sufficient remaining disk space (3312685416448 B)
[2026-03-04 12:38:40] 2026-03-04 11:37:35,323 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-04 12:38:40] 2026-03-04 11:37:35,323 | INFO     | current server update state: UPDATING_FINAL
[2026-03-04 12:38:40] 2026-03-04 11:37:35,323 | INFO     | update_server=False
[2026-03-04 12:38:40] 2026-03-04 11:37:35,323 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-04 12:38:40] 2026-03-04 11:37:35,396 | INFO     | all payload control threads have been joined
[2026-03-04 12:38:40] 2026-03-04 11:37:35,405 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-04 12:38:40] 2026-03-04 11:37:35,918 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-04 12:38:40] 2026-03-04 11:37:35,919 | INFO     | aborting loop
[2026-03-04 12:38:40] 2026-03-04 11:37:36,043 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-04 12:38:40] 2026-03-04 11:37:36,260 | INFO     | all data control threads have been joined
[2026-03-04 12:38:40] 2026-03-04 11:37:36,329 | INFO     | [job] retrieve thread has finished
[2026-03-04 12:38:40] 2026-03-04 11:37:36,402 | INFO     | [payload] control thread has finished
[2026-03-04 12:38:40] 2026-03-04 11:37:36,612 | INFO     | [payload] validate_post thread has finished
[2026-03-04 12:38:40] 2026-03-04 11:37:36,616 | INFO     | [job] validate thread has finished
[2026-03-04 12:38:40] 2026-03-04 11:37:36,817 | INFO     | [job] create_data_payload thread has finished
[2026-03-04 12:38:40] 2026-03-04 11:37:36,924 | INFO     | [job] job monitor thread has finished
[2026-03-04 12:38:40] 2026-03-04 11:37:36,971 | INFO     | all job control threads have been joined
[2026-03-04 12:38:40] 2026-03-04 11:37:37,053 | INFO     | [payload] validate_pre thread has finished
[2026-03-04 12:38:40] 2026-03-04 11:37:37,250 | INFO     | [payload] failed_post thread has finished
[2026-03-04 12:38:40] 2026-03-04 11:37:37,256 | INFO     | [data] copytool_in thread has finished
[2026-03-04 12:38:40] 2026-03-04 11:37:37,266 | INFO     | [data] control thread has finished
[2026-03-04 12:38:40] 2026-03-04 11:37:37,411 | INFO     | [data] copytool_out thread has finished
[2026-03-04 12:38:40] 2026-03-04 11:37:37,416 | INFO     | [payload] execute_payloads thread has finished
[2026-03-04 12:38:40] 2026-03-04 11:37:37,977 | INFO     | [job] control thread has finished
[2026-03-04 12:38:40] 2026-03-04 11:37:37,999 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-04 12:38:40] 2026-03-04 11:37:39,005 | INFO     | [job] queue monitor thread has finished
[2026-03-04 12:38:40] 2026-03-04 11:37:40,050 | INFO     | [data] queue_monitor thread has finished
[2026-03-04 12:38:40] 2026-03-04 11:37:45,855 | INFO     | job.realtimelogging is not enabled
[2026-03-04 12:38:40] 2026-03-04 11:37:46,861 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-04 12:38:40] 2026-03-04 11:38:04,769 | INFO     | PID=1767811 has CPU usage=6.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-04 12:38:40] 2026-03-04 11:38:04,770 | INFO     | .. there are 19 such processes running
[2026-03-04 12:38:40] 2026-03-04 11:38:04,771 | INFO     | found 0 job(s) in 20 queues
[2026-03-04 12:38:40] 2026-03-04 11:38:04,771 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-04 12:38:40] 2026-03-04 11:38:04,772 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-04 12:38:40] 2026-03-04 11:38:34,881 | INFO     | [monitor] cgroup control has ended
[2026-03-04 12:38:40] 2026-03-04 11:38:34,952 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22817092339520)>', '<ExcThread(monitor, started 22816851502848)>']
[2026-03-04 12:38:40] 2026-03-04 11:38:35,907 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-04 12:38:40] 2026-03-04 11:38:35,908 | INFO     | [monitor] control thread has ended
[2026-03-04 12:38:40] 2026-03-04 11:38:39,967 | INFO     | all workflow threads have been joined
[2026-03-04 12:38:40] 2026-03-04 11:38:39,968 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-04 12:38:40] 2026-03-04 11:38:39,968 | INFO     | traces error code: 0
[2026-03-04 12:38:40] 2026-03-04 11:38:39,968 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-04 12:38:40] 2026-03-04 11:38:40,126 [wrapper] ==== pilot stdout END ====
[2026-03-04 12:38:40] 2026-03-04 11:38:40,129 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-04 12:38:40] 2026-03-04 11:38:40,131 [wrapper] pilotpid: 1767811
[2026-03-04 12:38:40] 2026-03-04 11:38:40,133 [wrapper] Pilot exit status: 0
[2026-03-04 12:38:40] 2026-03-04 11:38:40,144 [wrapper] pandaids: 7036368782
[2026-03-04 12:38:40] 2026-03-04 11:38:40,238 [wrapper] cleanup supervisor_pilot 1901015 1767812
[2026-03-04 12:38:40] 2026-03-04 11:38:40,241 [wrapper] Test setup, not cleaning
[2026-03-04 12:38:40] 2026-03-04 11:38:40,244 [wrapper] apfmon messages muted
[2026-03-04 12:38:40] 2026-03-04 11:38:40,246 [wrapper] ==== wrapper stdout END ====
[2026-03-04 12:38:40] 2026-03-04 11:38:40,249 [wrapper] ==== wrapper stderr END ====
[2026-03-04 12:38:40]  *** Error codes and diagnostics ***
[2026-03-04 12:38:40]     "exeErrorCode": 0,
[2026-03-04 12:38:40]     "exeErrorDiag": "",
[2026-03-04 12:38:40]     "pilotErrorCode": 0,
[2026-03-04 12:38:40]     "pilotErrorDiag": "",
[2026-03-04 12:38:40]  *** Listing of results directory ***
[2026-03-04 12:38:40] total 333948
[2026-03-04 12:38:40] -rw-r--r-- 1 boinc boinc    584627 Mar  3 17:29 pilot3.tar.gz
[2026-03-04 12:38:40] -rwx------ 1 boinc boinc     36322 Mar  3 17:33 runpilot2-wrapper.sh
[2026-03-04 12:38:40] -rw-r--r-- 1 boinc boinc      5111 Mar  3 17:33 queuedata.json
[2026-03-04 12:38:40] -rw-r--r-- 1 boinc boinc       100 Mar  4 10:59 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-04 12:38:40] -rwxr-xr-x 1 boinc boinc      7986 Mar  4 10:59 run_atlas
[2026-03-04 12:38:40] -rw-r--r-- 1 boinc boinc       105 Mar  4 10:59 job.xml
[2026-03-04 12:38:40] -rw-r--r-- 1 boinc boinc      6697 Mar  4 10:59 init_data.xml
[2026-03-04 12:38:40] -rw-r--r-- 2 boinc boinc 189219272 Mar  4 10:59 EVNT.48700936._000109.pool.root.1
[2026-03-04 12:38:40] -rw-r--r-- 2 boinc boinc     15845 Mar  4 10:59 start_atlas.sh
[2026-03-04 12:38:40] drwxrwx--x 2 boinc boinc      4096 Mar  4 10:59 shared
[2026-03-04 12:38:40] -rw-r--r-- 2 boinc boinc    597929 Mar  4 10:59 input.tar.gz
[2026-03-04 12:38:40] -rw-r--r-- 1 boinc boinc         0 Mar  4 10:59 boinc_lockfile
[2026-03-04 12:38:40] -rw-r--r-- 1 boinc boinc      2500 Mar  4 10:59 pandaJob.out
[2026-03-04 12:38:40] -rw------- 1 boinc boinc    997376 Mar  4 10:59 agis_schedconf.cvmfs.json
[2026-03-04 12:38:40] -rw------- 1 boinc boinc   1516092 Mar  4 10:59 agis_ddmendpoints.agis.ALL.json
[2026-03-04 12:38:40] -rw------- 1 boinc boinc       443 Mar  4 10:59 workernode_map.json
[2026-03-04 12:38:40] drwx------ 5 boinc boinc      4096 Mar  4 10:59 pilot3
[2026-03-04 12:38:40] -rw------- 1 boinc boinc 146571710 Mar  4 12:37 HITS.48700938._002769.pool.root.1
[2026-03-04 12:38:40] -rw-r--r-- 1 boinc boinc       529 Mar  4 12:37 boinc_task_state.xml
[2026-03-04 12:38:40] -rw------- 1 boinc boinc      1025 Mar  4 12:37 memory_monitor_summary.json
[2026-03-04 12:38:40] -rw------- 1 boinc boinc    275507 Mar  4 12:37 log.48700938._002769.job.log.tgz.1
[2026-03-04 12:38:40] -rw------- 1 boinc boinc      6337 Mar  4 12:37 heartbeat.json
[2026-03-04 12:38:40] -rw------- 1 boinc boinc        95 Mar  4 12:38 pilot_heartbeat.json
[2026-03-04 12:38:40] -rw-r--r-- 1 boinc boinc        27 Mar  4 12:38 wrapper_checkpoint.txt
[2026-03-04 12:38:40] -rw------- 1 boinc boinc      4903 Mar  4 12:38 pilotlog.txt
[2026-03-04 12:38:40] -rw------- 1 boinc boinc    842267 Mar  4 12:38 log.48700938._002769.job.log.1
[2026-03-04 12:38:40] -rw-r--r-- 1 boinc boinc      8192 Mar  4 12:38 boinc_mmap_file
[2026-03-04 12:38:40] -rw------- 1 boinc boinc       357 Mar  4 12:38 output.list
[2026-03-04 12:38:40] -rw-r--r-- 1 boinc boinc       620 Mar  4 12:38 runtime_log
[2026-03-04 12:38:40] -rw------- 1 boinc boinc   1136640 Mar  4 12:38 result.tar.gz
[2026-03-04 12:38:40] -rw-r--r-- 1 boinc boinc      9204 Mar  4 12:38 runtime_log.err
[2026-03-04 12:38:40] -rw------- 1 boinc boinc       662 Mar  4 12:38 1hkKDmmrhH9n9Rq4apOajLDm4fhM0noT9bVooX4SDmq2ELDmrbwAim.diag
[2026-03-04 12:38:40] -rw-r--r-- 1 boinc boinc     22667 Mar  4 12:38 stderr.txt
[2026-03-04 12:38:40] HITS file was successfully produced:
[2026-03-04 12:38:40] -rw------- 1 boinc boinc 146571710 Mar  4 12:37 shared/HITS.pool.root.1
[2026-03-04 12:38:40]  *** Contents of shared directory: ***
[2026-03-04 12:38:40] total 329644
[2026-03-04 12:38:40] -rw-r--r-- 2 boinc boinc 189219272 Mar  4 10:59 ATLAS.root_0
[2026-03-04 12:38:40] -rw-r--r-- 2 boinc boinc     15845 Mar  4 10:59 start_atlas.sh
[2026-03-04 12:38:40] -rw-r--r-- 2 boinc boinc    597929 Mar  4 10:59 input.tar.gz
[2026-03-04 12:38:40] -rw------- 1 boinc boinc 146571710 Mar  4 12:37 HITS.pool.root.1
[2026-03-04 12:38:40] -rw------- 1 boinc boinc   1136640 Mar  4 12:38 result.tar.gz
12:38:42 (1760702): run_atlas exited; CPU time 22516.200906
12:38:42 (1760702): called boinc_finish(0)

</stderr_txt>
]]>

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