Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
10:39:42 (3763011): wrapper (7.7.26015): starting
10:39:42 (3763011): wrapper: running run_atlas (--nthreads 12)
[2026-03-03 10:39:42] Arguments: --nthreads 12
[2026-03-03 10:39:42] Threads: 12
[2026-03-03 10:39:42] Checking for CVMFS
[2026-03-03 10:39:43] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-03 10:39:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-03 10:39:44] Running cvmfs_config stat atlas.cern.ch
[2026-03-03 10:39:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-03 10:39:46] 2.11.5.0 3306151 133263 223372 156853 2 420 28833560 45568000 23278 130560 0 785040688 99.816 454900702 21774 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2026-03-03 10:39:46] CVMFS is ok
[2026-03-03 10:39:46] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-03 10:39:46] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-03 10:39:46] Further information can be found at the LHC@home message board.
[2026-03-03 10:39:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-03 10:39:46] Checking for apptainer binary...
[2026-03-03 10:39:46] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-03 10:39:46] Running /usr/bin/apptainer --version
[2026-03-03 10:39:46] apptainer version 1.4.1-1.el9
[2026-03-03 10:39:46] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-03 10:39:48] wns0041.triumf.lcg
[2026-03-03 10:39:48] apptainer works
[2026-03-03 10:39:48] Set ATHENA_PROC_NUMBER=12
[2026-03-03 10:39:48] Set ATHENA_CORE_NUMBER=12
[2026-03-03 10:39:48] Starting ATLAS job with PandaID=7038487312
[2026-03-03 10:39:48] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-03 10:47:49]  *** The last 200 lines of the pilot log: ***
[2026-03-03 10:47:49] 2026-03-03 18:46:52,078 | WARNING  | wrong length of table data, x=[1772563416.0, 1772563477.0], y=[11187.0, 398880.0] (must be same and length>=4)
[2026-03-03 10:47:49] 2026-03-03 18:46:52,078 | INFO     | could have reported an average CPU frequency of 1305 MHz (4 samples)
[2026-03-03 10:47:49] 2026-03-03 18:46:52,078 | INFO     | ..............................
[2026-03-03 10:47:49] 2026-03-03 18:46:52,078 | INFO     | . Timing measurements:
[2026-03-03 10:47:49] 2026-03-03 18:46:52,078 | INFO     | . get job = 0 s
[2026-03-03 10:47:49] 2026-03-03 18:46:52,078 | INFO     | . initial setup = 38 s
[2026-03-03 10:47:49] 2026-03-03 18:46:52,079 | INFO     | . payload setup = 54 s
[2026-03-03 10:47:49] 2026-03-03 18:46:52,079 | INFO     | . stage-in = 0 s
[2026-03-03 10:47:49] 2026-03-03 18:46:52,079 | INFO     | . payload execution = 112 s
[2026-03-03 10:47:49] 2026-03-03 18:46:52,079 | INFO     | . stage-out = 2 s
[2026-03-03 10:47:49] 2026-03-03 18:46:52,079 | INFO     | . log creation = 0 s
[2026-03-03 10:47:49] 2026-03-03 18:46:52,079 | INFO     | ..............................
[2026-03-03 10:47:49] 2026-03-03 18:46:52,079 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2026-03-03 10:47:49] 2026-03-03 18:46:52,080 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-7038487312/pilotlog.txt
[2026-03-03 10:47:49] 2026-03-03 18:46:52,158 | INFO     | monitor loop #79: job 0:7038487312 is in state 'failed'
[2026-03-03 10:47:49] 2026-03-03 18:46:52,159 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2026-03-03 10:47:49] 2026-03-03 18:46:52,214 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2026-03-03 10:47:49] - Log from pilotlog.txt -
[2026-03-03 10:47:49] 2026-03-03 18:46:52,076 | INFO     | extracted standard memory fields from prmon json
[2026-03-03 10:47:49] 2026-03-03 18:46:52,076 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-03 10:47:49] 2026-03-03 18:46:52,077 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-03 10:47:49] 2026-03-03 18:46:52,077 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-03 10:47:49] 2026-03-03 18:46:52,078 | WARNING  | wrong length of table data, x=[1772563416.0, 1772563477.0], y=[11187.0, 398880.0] (must be same and length>=4)
[2026-03-03 10:47:49] 2026-03-03 18:46:52,078 | INFO     | could have reported an average CPU frequency of 1305 MHz (4 samples)
[2026-03-03 10:47:49] 2026-03-03 18:46:52,078 | INFO     | ..............................
[2026-03-03 10:47:49] 2026-03-03 18:46:52,078 | INFO     | . Timing measurements:
[2026-03-03 10:47:49] 2026-03-03 18:46:52,078 | INFO     | . get job = 0 s
[2026-03-03 10:47:49] 2026-03-03 18:46:52,078 | INFO     | . initial setup = 38 s
[2026-03-03 10:47:49] 2026-03-03 18:46:52,079 | INFO     | . payload setup = 54 s
[2026-03-03 10:47:49] 2026-03-03 18:46:52,079 | INFO     | . stage-in = 0 s
[2026-03-03 10:47:49] 2026-03-03 18:46:52,079 | INFO     | . payload execution = 112 s
[2026-03-03 10:47:49] 2026-03-03 18:46:52,079 | INFO     | . stage-out = 2 s
[2026-03-03 10:47:49] 2026-03-03 18:46:52,079 | INFO     | . log creation = 0 s
[2026-03-03 10:47:49] 2026-03-03 18:46:52,079 | INFO     | ..............................
[2026-03-03 10:47:49] 2026-03-03 18:46:52,079 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2026-03-03 10:47:49] 2026-03-03 18:46:52,080 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-7038487312/pilotlog.txt
[2026-03-03 10:47:49] 2026-03-03 18:46:52,158 | INFO     | monitor loop #79: job 0:7038487312 is in state 'failed'
[2026-03-03 10:47:49] 2026-03-03 18:46:52,159 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2026-03-03 10:47:49] 2026-03-03 18:46:52,214 | WARNING  | 
[2026-03-03 10:47:49] [begin log extracts]
[2026-03-03 10:47:49] - Log from pilotlog.txt -
[2026-03-03 10:47:49] 2026-03-03 18:46:52,076 | INFO     | extracted standard memory fields from prmon json
[2026-03-03 10:47:49] 2026-03-03 18:46:52,076 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-03 10:47:49] 2026-03-03 18:46:52,077 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-03 10:47:49] 2026-03-03 18:46:52,077 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-03 10:47:49] 2026-03-03 18:46:52,078 | WARNING  | wrong length of table data, x=[1772563416.0, 1772563477.0], y=[11187.0, 398880.0] (must be same and length>=4)
[2026-03-03 10:47:49] 2026-03-03 18:46:52,078 | INFO     | could have reported an average CPU frequency of 1305 MHz (4 samples)
[2026-03-03 10:47:49] 2026-03-03 18:46:52,078 | INFO     | ..............................
[2026-03-03 10:47:49] 2026-03-03 18:46:52,078 | INFO     | . Timing measurements:
[2026-03-03 10:47:49] 2026-03-03 18:46:52,078 | INFO     | . get job = 0 s
[2026-03-03 10:47:49] 2026-03-03 18:46:52,078 | INFO     | . initial setup = 38 s
[2026-03-03 10:47:49] 2026-03-03 18:46:52,079 | INFO     | . payload setup = 54 s
[2026-03-03 10:47:49] 2026-03-03 18:46:52,079 | INFO     | . stage-in = 0 s
[2026-03-03 10:47:49] 2026-03-03 18:46:52,079 | INFO     | . payload execution = 112 s
[2026-03-03 10:47:49] 2026-03-03 18:46:52,079 | INFO     | . stage-out = 2 s
[2026-03-03 10:47:49] 2026-03-03 18:46:52,079 | INFO     | . log creation = 0 s
[2026-03-03 10:47:49] 2026-03-03 18:46:52,079 | INFO     | ..............................
[2026-03-03 10:47:49] 2026-03-03 18:46:52,079 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2026-03-03 10:47:49] 2026-03-03 18:46:52,080 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-7038487312/pilotlog.txt
[2026-03-03 10:47:49] 2026-03-03 18:46:52,158 | INFO     | monitor loop #79: job 0:7038487312 is in state 'failed'
[2026-03-03 10:47:49] 2026-03-03 18:46:52,159 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2026-03-03 10:47:49] [end log extracts]
[2026-03-03 10:47:49] 2026-03-03 18:46:52,215 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2026-03-03 10:47:49] 2026-03-03 18:46:52,216 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2026-03-03 10:47:49] 2026-03-03 18:46:52,592 | INFO     | time since job start (310s) is within the limit (349056.0s)
[2026-03-03 10:47:49] 2026-03-03 18:46:52,624 | INFO     | 
[2026-03-03 10:47:49] 2026-03-03 18:46:52,627 | INFO     | job summary report
[2026-03-03 10:47:49] 2026-03-03 18:46:52,627 | INFO     | --------------------------------------------------
[2026-03-03 10:47:49] 2026-03-03 18:46:52,627 | INFO     | PanDA job id: 7038487312
[2026-03-03 10:47:49] 2026-03-03 18:46:52,628 | INFO     | task id: 48955006
[2026-03-03 10:47:49] 2026-03-03 18:46:52,628 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2026-03-03 10:44:36,950 CRITICAL Transform executor raised TransformValidationExceptio
[2026-03-03 10:47:49] 2026-03-03 18:46:52,628 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-03 10:47:49] 2026-03-03 18:46:52,628 | INFO     | pilot state: failed 
[2026-03-03 10:47:49] 2026-03-03 18:46:52,628 | INFO     | transexitcode: 65
[2026-03-03 10:47:49] 2026-03-03 18:46:52,628 | INFO     | exeerrorcode: 65
[2026-03-03 10:47:49] 2026-03-03 18:46:52,628 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1)
[2026-03-03 10:47:49] 2026-03-03 18:46:52,628 | INFO     | exitcode: 65
[2026-03-03 10:47:49] 2026-03-03 18:46:52,628 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1)
[2026-03-03 10:47:49] 2026-03-03 18:46:52,628 | INFO     | cpuconsumptiontime: 26 s
[2026-03-03 10:47:49] 2026-03-03 18:46:52,628 | INFO     | nevents: 0
[2026-03-03 10:47:49] 2026-03-03 18:46:52,628 | INFO     | neventsw: 0
[2026-03-03 10:47:49] 2026-03-03 18:46:52,629 | INFO     | pid: 3772170
[2026-03-03 10:47:49] 2026-03-03 18:46:52,629 | INFO     | pgrp: 3772170
[2026-03-03 10:47:49] 2026-03-03 18:46:52,629 | INFO     | corecount: 12
[2026-03-03 10:47:49] 2026-03-03 18:46:52,629 | INFO     | event service: False
[2026-03-03 10:47:49] 2026-03-03 18:46:52,629 | INFO     | sizes: {0: 2285969, 1: 2286651, 2: 2287084, 3: 2287112, 14: 2287140, 171: 2310406, 172: 2310510, 176: 2314830, 178: 2314886, 296: 2315052}
[2026-03-03 10:47:49] 2026-03-03 18:46:52,629 | INFO     | --------------------------------------------------
[2026-03-03 10:47:49] 2026-03-03 18:46:52,629 | INFO     | 
[2026-03-03 10:47:49] 2026-03-03 18:46:52,629 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2026-03-03 10:47:49] 2026-03-03 18:46:52,830 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-03 10:47:49] 2026-03-03 18:46:52,830 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-03 10:47:49] 2026-03-03 18:46:52,830 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-03 10:47:49] 2026-03-03 18:46:52,830 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-03 10:47:49] 2026-03-03 18:46:52,830 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-03 10:47:49] 2026-03-03 18:46:52,831 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-03 10:47:49] 2026-03-03 18:46:52,831 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-03 10:47:49] 2026-03-03 18:46:52,831 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-03 10:47:49] 2026-03-03 18:46:52,831 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-03 10:47:49] 2026-03-03 18:46:52,831 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-03 10:47:49] 2026-03-03 18:46:52,831 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-03 10:47:49] 2026-03-03 18:46:52,831 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-03 10:47:49] 2026-03-03 18:46:52,831 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-03 10:47:49] 2026-03-03 18:46:52,831 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-03 10:47:49] 2026-03-03 18:46:52,831 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-03 10:47:49] 2026-03-03 18:46:52,831 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-03 10:47:49] 2026-03-03 18:46:52,832 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-03 10:47:49] 2026-03-03 18:46:52,832 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-03 10:47:49] 2026-03-03 18:46:52,832 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-03 10:47:49] 2026-03-03 18:46:52,832 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-03 10:47:49] 2026-03-03 18:46:52,832 | INFO     | job 7038487312 has completed (purged errors)
[2026-03-03 10:47:49] 2026-03-03 18:46:52,853 | INFO     | overall cleanup function is called
[2026-03-03 10:47:49] 2026-03-03 18:46:53,860 | INFO     | --- collectZombieJob: --- 10, [3772170]
[2026-03-03 10:47:49] 2026-03-03 18:46:53,860 | INFO     | zombie collector waiting for pid 3772170
[2026-03-03 10:47:49] 2026-03-03 18:46:53,860 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-03 10:47:49] 2026-03-03 18:46:53,860 | INFO     | collected zombie processes
[2026-03-03 10:47:49] 2026-03-03 18:46:53,861 | INFO     | will attempt to kill all subprocesses of pid=3772170
[2026-03-03 10:47:49] 2026-03-03 18:46:54,892 | INFO     | process IDs to be killed: [3772170] (in reverse order)
[2026-03-03 10:47:49] 2026-03-03 18:46:55,140 | WARNING  | found no corresponding commands to process id(s)
[2026-03-03 10:47:49] 2026-03-03 18:46:55,140 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-03 10:47:49] 2026-03-03 18:46:55,179 | INFO     | did not find any defunct processes belonging to 3772170
[2026-03-03 10:47:49] 2026-03-03 18:46:55,204 | INFO     | did not find any defunct processes belonging to 3772170
[2026-03-03 10:47:49] 2026-03-03 18:46:55,204 | INFO     | ready for new job
[2026-03-03 10:47:49] 2026-03-03 18:46:55,205 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-03 10:47:49] 2026-03-03 18:46:55,224 | INFO     | **************************************
[2026-03-03 10:47:49] 2026-03-03 18:46:55,224 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-03 10:47:49] 2026-03-03 18:46:55,224 | INFO     | **************************************
[2026-03-03 10:47:49] 2026-03-03 18:46:55,224 | INFO     | 
[2026-03-03 10:47:49] 2026-03-03 18:46:55,242 | INFO     | architecture information:
[2026-03-03 10:47:49] 2026-03-03 18:46:55,242 | INFO     | executing command: cat /etc/os-release
[2026-03-03 10:47:49] 2026-03-03 18:46:55,338 | INFO     | cat /etc/os-release:
[2026-03-03 10:47:49] NAME="CentOS Linux"
[2026-03-03 10:47:49] VERSION="7 (Core)"
[2026-03-03 10:47:49] ID="centos"
[2026-03-03 10:47:49] ID_LIKE="rhel fedora"
[2026-03-03 10:47:49] VERSION_ID="7"
[2026-03-03 10:47:49] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-03 10:47:49] ANSI_COLOR="0;31"
[2026-03-03 10:47:49] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-03 10:47:49] HOME_URL="https://www.centos.org/"
[2026-03-03 10:47:49] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-03 10:47:49] 
[2026-03-03 10:47:49] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-03 10:47:49] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-03 10:47:49] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-03 10:47:49] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-03 10:47:49] 
[2026-03-03 10:47:49] 2026-03-03 18:46:55,339 | INFO     | **************************************
[2026-03-03 10:47:49] 2026-03-03 18:46:55,842 | INFO     | executing command: df -mP /home/boinc/slots/0
[2026-03-03 10:47:49] 2026-03-03 18:46:55,907 | INFO     | sufficient remaining disk space (1974617505792 B)
[2026-03-03 10:47:49] 2026-03-03 18:46:55,907 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-03 10:47:49] 2026-03-03 18:46:55,908 | INFO     | current server update state: UPDATING_FINAL
[2026-03-03 10:47:49] 2026-03-03 18:46:55,908 | INFO     | update_server=False
[2026-03-03 10:47:49] 2026-03-03 18:46:55,908 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-03 10:47:49] 2026-03-03 18:46:55,909 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-03 10:47:49] 2026-03-03 18:46:55,909 | INFO     | aborting loop
[2026-03-03 10:47:49] 2026-03-03 18:46:56,569 | INFO     | all data control threads have been joined
[2026-03-03 10:47:49] 2026-03-03 18:46:56,706 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-03 10:47:49] 2026-03-03 18:46:56,874 | INFO     | all job control threads have been joined
[2026-03-03 10:47:49] 2026-03-03 18:46:56,914 | INFO     | [job] retrieve thread has finished
[2026-03-03 10:47:49] 2026-03-03 18:46:56,915 | INFO     | [job] job monitor thread has finished
[2026-03-03 10:47:49] 2026-03-03 18:46:56,973 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-03 10:47:49] 2026-03-03 18:46:57,280 | INFO     | all payload control threads have been joined
[2026-03-03 10:47:49] 2026-03-03 18:46:57,579 | INFO     | [data] control thread has finished
[2026-03-03 10:47:49] 2026-03-03 18:46:57,622 | INFO     | [payload] failed_post thread has finished
[2026-03-03 10:47:49] 2026-03-03 18:46:57,641 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-03 10:47:49] 2026-03-03 18:46:57,847 | INFO     | [payload] execute_payloads thread has finished
[2026-03-03 10:47:49] 2026-03-03 18:46:57,880 | INFO     | [job] control thread has finished
[2026-03-03 10:47:49] 2026-03-03 18:46:57,957 | INFO     | [job] create_data_payload thread has finished
[2026-03-03 10:47:49] 2026-03-03 18:46:58,280 | INFO     | [data] copytool_in thread has finished
[2026-03-03 10:47:49] 2026-03-03 18:46:58,286 | INFO     | [payload] control thread has finished
[2026-03-03 10:47:49] 2026-03-03 18:46:58,334 | INFO     | [payload] validate_pre thread has finished
[2026-03-03 10:47:49] 2026-03-03 18:46:58,383 | INFO     | [job] validate thread has finished
[2026-03-03 10:47:49] 2026-03-03 18:46:58,395 | INFO     | [payload] validate_post thread has finished
[2026-03-03 10:47:49] 2026-03-03 18:46:58,603 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-03 10:47:49] 2026-03-03 18:46:58,647 | INFO     | [job] queue monitor thread has finished
[2026-03-03 10:47:49] 2026-03-03 18:46:58,713 | INFO     | [data] copytool_out thread has finished
[2026-03-03 10:47:49] 2026-03-03 18:47:02,618 | INFO     | [data] queue_monitor thread has finished
[2026-03-03 10:47:49] 2026-03-03 18:47:26,800 | INFO     | PID=3767205 has CPU usage=2.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-03 10:47:49] 2026-03-03 18:47:26,800 | INFO     | .. there are 35 such processes running
[2026-03-03 10:47:49] 2026-03-03 18:47:26,801 | INFO     | found 0 job(s) in 20 queues
[2026-03-03 10:47:49] 2026-03-03 18:47:26,801 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-03 10:47:49] 2026-03-03 18:47:26,801 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-03 10:47:49] 2026-03-03 18:47:41,899 | INFO     | [monitor] cgroup control has ended
[2026-03-03 10:47:49] 2026-03-03 18:47:42,421 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139765982869312)>', '<ExcThread(monitor, started 139765592606464)>']
[2026-03-03 10:47:49] 2026-03-03 18:47:42,914 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-03 10:47:49] 2026-03-03 18:47:42,914 | INFO     | [monitor] control thread has ended
[2026-03-03 10:47:49] 2026-03-03 18:47:47,453 | INFO     | all workflow threads have been joined
[2026-03-03 10:47:49] 2026-03-03 18:47:47,453 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-03 10:47:49] 2026-03-03 18:47:47,454 | INFO     | traces error code: 0
[2026-03-03 10:47:49] 2026-03-03 18:47:47,454 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-03 10:47:49] 2026-03-03 18:47:47,946 [wrapper] ==== pilot stdout END ====
[2026-03-03 10:47:49] 2026-03-03 18:47:47,962 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-03 10:47:49] 2026-03-03 18:47:47,987 [wrapper] pilotpid: 3767205
[2026-03-03 10:47:49] 2026-03-03 18:47:48,019 [wrapper] Pilot exit status: 0
[2026-03-03 10:47:49] 2026-03-03 18:47:48,163 [wrapper] pandaids: 7038487312
[2026-03-03 10:47:49] 2026-03-03 18:47:48,858 [wrapper] cleanup supervisor_pilot 3767212 3767206
[2026-03-03 10:47:49] 2026-03-03 18:47:48,891 [wrapper] Test setup, not cleaning
[2026-03-03 10:47:49] 2026-03-03 18:47:48,925 [wrapper] apfmon messages muted
[2026-03-03 10:47:49] 2026-03-03 18:47:48,953 [wrapper] ==== wrapper stdout END ====
[2026-03-03 10:47:49] 2026-03-03 18:47:49,018 [wrapper] ==== wrapper stderr END ====
[2026-03-03 10:47:49]  *** Error codes and diagnostics ***
[2026-03-03 10:47:49]     "exeErrorCode": 65,
[2026-03-03 10:47:49]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
[2026-03-03 10:47:49]     "pilotErrorCode": 1305,
[2026-03-03 10:47:49]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
[2026-03-03 10:47:49]  *** Listing of results directory ***
[2026-03-03 10:47:49] total 438932
[2026-03-03 10:47:49] -rw-r--r--. 1 boinc boinc    584627 Mar  3 05:54 pilot3.tar.gz
[2026-03-03 10:47:49] -rwx------. 1 boinc boinc     36322 Mar  3 05:58 runpilot2-wrapper.sh
[2026-03-03 10:47:49] -rw-r--r--. 1 boinc boinc      5111 Mar  3 06:00 queuedata.json
[2026-03-03 10:47:49] -rw-r--r--. 1 boinc boinc       100 Mar  3 10:39 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-03 10:47:49] -rwxr-xr-x. 1 boinc boinc      7986 Mar  3 10:39 run_atlas
[2026-03-03 10:47:49] -rw-r--r--. 1 boinc boinc       105 Mar  3 10:39 job.xml
[2026-03-03 10:47:49] -rw-r--r--. 1 boinc boinc      6594 Mar  3 10:39 init_data.xml
[2026-03-03 10:47:49] -rw-r--r--. 2 boinc boinc 445303416 Mar  3 10:39 EVNT.46701403._000006.pool.root.1
[2026-03-03 10:47:49] -rw-r--r--. 2 boinc boinc     15845 Mar  3 10:39 start_atlas.sh
[2026-03-03 10:47:49] drwxrwx--x. 2 boinc boinc      4096 Mar  3 10:39 shared
[2026-03-03 10:47:49] -rw-r--r--. 2 boinc boinc    597938 Mar  3 10:39 input.tar.gz
[2026-03-03 10:47:49] -rw-r--r--. 1 boinc boinc         0 Mar  3 10:39 boinc_lockfile
[2026-03-03 10:47:49] -rw-r--r--. 1 boinc boinc      2560 Mar  3 10:39 pandaJob.out
[2026-03-03 10:47:49] -rw-------. 1 boinc boinc    998492 Mar  3 10:41 agis_schedconf.cvmfs.json
[2026-03-03 10:47:49] -rw-------. 1 boinc boinc   1516092 Mar  3 10:41 agis_ddmendpoints.agis.ALL.json
[2026-03-03 10:47:49] -rw-------. 1 boinc boinc       445 Mar  3 10:41 workernode_map.json
[2026-03-03 10:47:49] drwx------. 5 boinc boinc      4096 Mar  3 10:41 pilot3
[2026-03-03 10:47:49] -rw-r--r--. 1 boinc boinc       525 Mar  3 10:44 boinc_task_state.xml
[2026-03-03 10:47:49] -rw-------. 1 boinc boinc       986 Mar  3 10:44 memory_monitor_summary.json
[2026-03-03 10:47:49] -rw-------. 1 boinc boinc     22089 Mar  3 10:44 log.48955006._000294.job.log.tgz.1
[2026-03-03 10:47:49] -rw-------. 1 boinc boinc      7034 Mar  3 10:46 heartbeat.json
[2026-03-03 10:47:49] -rw-------. 1 boinc boinc        95 Mar  3 10:47 pilot_heartbeat.json
[2026-03-03 10:47:49] -rw-r--r--. 1 boinc boinc        23 Mar  3 10:47 wrapper_checkpoint.txt
[2026-03-03 10:47:49] -rw-r--r--. 1 boinc boinc      8192 Mar  3 10:47 boinc_mmap_file
[2026-03-03 10:47:49] -rw-------. 1 boinc boinc      4819 Mar  3 10:47 pilotlog.txt
[2026-03-03 10:47:49] -rw-------. 1 boinc boinc     95975 Mar  3 10:47 log.48955006._000294.job.log.1
[2026-03-03 10:47:49] -rw-------. 1 boinc boinc       188 Mar  3 10:47 output.list
[2026-03-03 10:47:49] -rw-r--r--. 1 boinc boinc       620 Mar  3 10:47 runtime_log
[2026-03-03 10:47:49] -rw-------. 1 boinc boinc    133120 Mar  3 10:47 result.tar.gz
[2026-03-03 10:47:49] -rw-r--r--. 1 boinc boinc      8635 Mar  3 10:47 runtime_log.err
[2026-03-03 10:47:49] -rw-------. 1 boinc boinc       643 Mar  3 10:47 BIGNDmLRfH9n9Rq4apOajLDm4fhM0noT9bVooX4SDmFoELDmbrwIJn.diag
[2026-03-03 10:47:49] -rw-r--r--. 1 boinc boinc     21958 Mar  3 10:47 stderr.txt
[2026-03-03 10:47:49] No HITS result produced
[2026-03-03 10:47:49]  *** Contents of shared directory: ***
[2026-03-03 10:47:50] total 435604
[2026-03-03 10:47:50] -rw-r--r--. 2 boinc boinc 445303416 Mar  3 10:39 ATLAS.root_0
[2026-03-03 10:47:50] -rw-r--r--. 2 boinc boinc     15845 Mar  3 10:39 start_atlas.sh
[2026-03-03 10:47:50] -rw-r--r--. 2 boinc boinc    597938 Mar  3 10:39 input.tar.gz
[2026-03-03 10:47:50] -rw-------. 1 boinc boinc    133120 Mar  3 10:47 result.tar.gz
10:47:51 (3763011): run_atlas exited; CPU time 40.746308
10:47:51 (3763011): called boinc_finish(0)

</stderr_txt>
]]>

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