Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
12:14:04 (2436794): wrapper (7.7.26015): starting
12:14:04 (2436794): wrapper: running run_atlas (--nthreads 4)
[2026-03-04 12:14:04] Arguments: --nthreads 4
[2026-03-04 12:14:04] Threads: 4
[2026-03-04 12:14:04] Checking for CVMFS
[2026-03-04 12:14:04] No cvmfs_config command found, will try listing directly
[2026-03-04 12:14:04] CVMFS is ok
[2026-03-04 12:14:04] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-04 12:14:04] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-04 12:14:04] Further information can be found at the LHC@home message board.
[2026-03-04 12:14:04] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-04 12:14:04] Checking for apptainer binary...
[2026-03-04 12:14:04] which: no apptainer in ((null))
[2026-03-04 12:14:04] apptainer is not installed, using version from CVMFS
[2026-03-04 12:14:04] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-04 12:14:04] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot92/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut15.grid.cesnet.cz
[2026-03-04 12:14:04] apptainer works
[2026-03-04 12:14:04] Set ATHENA_PROC_NUMBER=4
[2026-03-04 12:14:04] Set ATHENA_CORE_NUMBER=4
[2026-03-04 12:14:04] Starting ATLAS job with PandaID=7036136311
[2026-03-04 12:14:04] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot92/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-04 14:22:41]  *** The last 200 lines of the pilot log: ***
[2026-03-04 14:22:41] 2026-03-04 13:21:48,969 | INFO     | sum of deviations: 7744528341.0
[2026-03-04 14:22:41] 2026-03-04 13:21:48,969 | INFO     | mean x: 1772626671.0
[2026-03-04 14:22:41] 2026-03-04 13:21:48,969 | INFO     | mean y: 2354749.112
[2026-03-04 14:22:41] 2026-03-04 13:21:48,969 | INFO     | intersect: -22666604698.58942
[2026-03-04 14:22:41] 2026-03-04 13:21:48,969 | INFO     | chi2: 1.1409634334205785
[2026-03-04 14:22:41] 2026-03-04 13:21:48,969 | INFO     | sum of square deviations: 535786790.0
[2026-03-04 14:22:41] 2026-03-04 13:21:48,970 | INFO     | sum of deviations: 7544755720.0
[2026-03-04 14:22:41] 2026-03-04 13:21:48,970 | INFO     | mean x: 1772626518.5
[2026-03-04 14:22:41] 2026-03-04 13:21:48,970 | INFO     | mean y: 2354312.716666667
[2026-03-04 14:22:41] 2026-03-04 13:21:48,970 | INFO     | intersect: -24959130954.354885
[2026-03-04 14:22:41] 2026-03-04 13:21:48,970 | INFO     | chi2: 1.142520459273811
[2026-03-04 14:22:41] 2026-03-04 13:21:48,971 | INFO     | current chi2=1.142520459273811 (change=-0.1364658855511742 %)
[2026-03-04 14:22:41] 2026-03-04 13:21:48,971 | INFO     | right removable region: 119
[2026-03-04 14:22:41] 2026-03-04 13:21:48,971 | INFO     | sum of square deviations: 535786790.0
[2026-03-04 14:22:41] 2026-03-04 13:21:48,971 | INFO     | sum of deviations: -4446317571.999999
[2026-03-04 14:22:41] 2026-03-04 13:21:48,972 | INFO     | mean x: 1772626823.5
[2026-03-04 14:22:41] 2026-03-04 13:21:48,972 | INFO     | mean y: 2380671.6666666665
[2026-03-04 14:22:41] 2026-03-04 13:21:48,972 | INFO     | intersect: 14712825089.168247
[2026-03-04 14:22:41] 2026-03-04 13:21:48,972 | INFO     | chi2: 0.003989795137284994
[2026-03-04 14:22:41] 2026-03-04 13:21:48,972 | INFO     | current chi2=0.003989795137284994 (change=99.65031349643489 %)
[2026-03-04 14:22:41] 2026-03-04 13:21:48,972 | INFO     | sum of square deviations: 471562330.0
[2026-03-04 14:22:41] 2026-03-04 13:21:48,973 | INFO     | sum of deviations: -3274325792.0
[2026-03-04 14:22:41] 2026-03-04 13:21:48,973 | INFO     | mean x: 1772626976.0
[2026-03-04 14:22:41] 2026-03-04 13:21:48,973 | INFO     | mean y: 2377877.6347826086
[2026-03-04 14:22:41] 2026-03-04 13:21:48,973 | INFO     | intersect: 12310736408.121655
[2026-03-04 14:22:41] 2026-03-04 13:21:48,973 | INFO     | chi2: 0.0026348795582145246
[2026-03-04 14:22:41] 2026-03-04 13:21:48,973 | INFO     | current chi2=0.0026348795582145246 (change=33.95952755590535 %)
[2026-03-04 14:22:41] 2026-03-04 13:21:48,973 | INFO     | sum of square deviations: 412686807.5
[2026-03-04 14:22:41] 2026-03-04 13:21:48,974 | INFO     | sum of deviations: -2367728206.5
[2026-03-04 14:22:41] 2026-03-04 13:21:48,974 | INFO     | mean x: 1772627128.5
[2026-03-04 14:22:41] 2026-03-04 13:21:48,974 | INFO     | mean y: 2375550.1
[2026-03-04 14:22:41] 2026-03-04 13:21:48,974 | INFO     | intersect: 10172555879.299282
[2026-03-04 14:22:41] 2026-03-04 13:21:48,974 | INFO     | chi2: 0.001148868919098613
[2026-03-04 14:22:41] 2026-03-04 13:21:48,974 | INFO     | current chi2=0.001148868919098613 (change=56.397668518969354 %)
[2026-03-04 14:22:41] 2026-03-04 13:21:48,975 | INFO     | sum of square deviations: 358927660.0
[2026-03-04 14:22:41] 2026-03-04 13:21:48,975 | INFO     | sum of deviations: -2010888485.0000002
[2026-03-04 14:22:41] 2026-03-04 13:21:48,975 | INFO     | mean x: 1772627281.0
[2026-03-04 14:22:41] 2026-03-04 13:21:48,975 | INFO     | mean y: 2374534.1523809526
[2026-03-04 14:22:41] 2026-03-04 13:21:48,975 | INFO     | intersect: 9933500453.954048
[2026-03-04 14:22:41] 2026-03-04 13:21:48,976 | INFO     | chi2: 0.0011271410290952994
[2026-03-04 14:22:41] 2026-03-04 13:21:48,976 | INFO     | current chi2=0.0011271410290952994 (change=1.891241867728556 %)
[2026-03-04 14:22:41] 2026-03-04 13:21:48,976 | INFO     | left removable region: 40
[2026-03-04 14:22:41] 2026-03-04 13:21:48,976 | INFO     | sum of square deviations: 152858680.0
[2026-03-04 14:22:41] 2026-03-04 13:21:48,976 | INFO     | sum of deviations: -387146442.9999999
[2026-03-04 14:22:41] 2026-03-04 13:21:48,977 | INFO     | mean x: 1772627708.0
[2026-03-04 14:22:41] 2026-03-04 13:21:48,977 | INFO     | mean y: 2369145.0126582277
[2026-03-04 14:22:41] 2026-03-04 13:21:48,977 | INFO     | intersect: 4491918000.958833
[2026-03-04 14:22:41] 2026-03-04 13:21:48,977 | INFO     | chi2: 5.9029730312859626e-05
[2026-03-04 14:22:41] 2026-03-04 13:21:48,977 | INFO     | current memory leak: -2.53 B/s (using 79 data points, chi2=0.00)
[2026-03-04 14:22:41] 2026-03-04 13:21:48,977 | INFO     | could have reported an average CPU frequency of 2782 MHz (8 samples)
[2026-03-04 14:22:41] 2026-03-04 13:21:48,977 | INFO     | ..............................
[2026-03-04 14:22:41] 2026-03-04 13:21:48,978 | INFO     | . Timing measurements:
[2026-03-04 14:22:41] 2026-03-04 13:21:48,978 | INFO     | . get job = 0 s
[2026-03-04 14:22:41] 2026-03-04 13:21:48,978 | INFO     | . initial setup = 7 s
[2026-03-04 14:22:41] 2026-03-04 13:21:48,978 | INFO     | . payload setup = 7 s
[2026-03-04 14:22:41] 2026-03-04 13:21:48,978 | INFO     | . stage-in = 0 s
[2026-03-04 14:22:41] 2026-03-04 13:21:48,978 | INFO     | . payload execution = 7618 s
[2026-03-04 14:22:41] 2026-03-04 13:21:48,978 | INFO     | . stage-out = 0 s
[2026-03-04 14:22:41] 2026-03-04 13:21:48,978 | INFO     | . log creation = 0 s
[2026-03-04 14:22:41] 2026-03-04 13:21:48,978 | INFO     | ..............................
[2026-03-04 14:22:41] 2026-03-04 13:21:49,064 | INFO     | 
[2026-03-04 14:22:41] 2026-03-04 13:21:49,064 | INFO     | job summary report
[2026-03-04 14:22:41] 2026-03-04 13:21:49,064 | INFO     | --------------------------------------------------
[2026-03-04 14:22:41] 2026-03-04 13:21:49,065 | INFO     | PanDA job id: 7036136311
[2026-03-04 14:22:41] 2026-03-04 13:21:49,065 | INFO     | task id: 48838581
[2026-03-04 14:22:41] 2026-03-04 13:21:49,065 | INFO     | errors: (none)
[2026-03-04 14:22:41] 2026-03-04 13:21:49,065 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-04 14:22:41] 2026-03-04 13:21:49,065 | INFO     | pilot state: finished 
[2026-03-04 14:22:41] 2026-03-04 13:21:49,065 | INFO     | transexitcode: 0
[2026-03-04 14:22:41] 2026-03-04 13:21:49,065 | INFO     | exeerrorcode: 0
[2026-03-04 14:22:41] 2026-03-04 13:21:49,065 | INFO     | exeerrordiag: 
[2026-03-04 14:22:41] 2026-03-04 13:21:49,065 | INFO     | exitcode: 0
[2026-03-04 14:22:41] 2026-03-04 13:21:49,065 | INFO     | exitmsg: OK
[2026-03-04 14:22:41] 2026-03-04 13:21:49,065 | INFO     | cpuconsumptiontime: 29286 s
[2026-03-04 14:22:41] 2026-03-04 13:21:49,066 | INFO     | nevents: 400
[2026-03-04 14:22:41] 2026-03-04 13:21:49,066 | INFO     | neventsw: 0
[2026-03-04 14:22:41] 2026-03-04 13:21:49,066 | INFO     | pid: 2446195
[2026-03-04 14:22:41] 2026-03-04 13:21:49,066 | INFO     | pgrp: 2446195
[2026-03-04 14:22:41] 2026-03-04 13:21:49,066 | INFO     | corecount: 4
[2026-03-04 14:22:41] 2026-03-04 13:21:49,066 | INFO     | event service: False
[2026-03-04 14:22:41] 2026-03-04 13:21:49,066 | INFO     | sizes: {0: 2286009, 1: 2287138, 12: 2287138, 7629: 2314636, 7631: 2323656, 7632: 2323712, 7633: 2324034}
[2026-03-04 14:22:41] 2026-03-04 13:21:49,066 | INFO     | --------------------------------------------------
[2026-03-04 14:22:41] 2026-03-04 13:21:49,066 | INFO     | 
[2026-03-04 14:22:41] 2026-03-04 13:21:49,066 | INFO     | executing command: ls -lF /scratch/boinc/var/slot92/slots/0
[2026-03-04 14:22:41] 2026-03-04 13:21:49,091 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-04 14:22:41] 2026-03-04 13:21:49,091 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-04 14:22:41] 2026-03-04 13:21:49,091 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-04 14:22:41] 2026-03-04 13:21:49,092 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-04 14:22:41] 2026-03-04 13:21:49,092 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-04 14:22:41] 2026-03-04 13:21:49,092 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-04 14:22:41] 2026-03-04 13:21:49,092 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-04 14:22:41] 2026-03-04 13:21:49,092 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-04 14:22:41] 2026-03-04 13:21:49,092 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-04 14:22:41] 2026-03-04 13:21:49,092 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-04 14:22:41] 2026-03-04 13:21:49,092 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-04 14:22:41] 2026-03-04 13:21:49,092 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-04 14:22:41] 2026-03-04 13:21:49,092 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-04 14:22:41] 2026-03-04 13:21:49,092 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-04 14:22:41] 2026-03-04 13:21:49,092 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-04 14:22:41] 2026-03-04 13:21:49,092 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-04 14:22:41] 2026-03-04 13:21:49,092 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-04 14:22:41] 2026-03-04 13:21:49,092 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-04 14:22:41] 2026-03-04 13:21:49,093 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-04 14:22:41] 2026-03-04 13:21:49,093 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-04 14:22:41] 2026-03-04 13:21:49,093 | INFO     | job 7036136311 has completed (purged errors)
[2026-03-04 14:22:41] 2026-03-04 13:21:49,093 | INFO     | overall cleanup function is called
[2026-03-04 14:22:41] 2026-03-04 13:21:50,101 | INFO     | --- collectZombieJob: --- 10, [2446195]
[2026-03-04 14:22:41] 2026-03-04 13:21:50,102 | INFO     | zombie collector waiting for pid 2446195
[2026-03-04 14:22:41] 2026-03-04 13:21:50,102 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-04 14:22:41] 2026-03-04 13:21:50,102 | INFO     | collected zombie processes
[2026-03-04 14:22:41] 2026-03-04 13:21:50,102 | INFO     | will attempt to kill all subprocesses of pid=2446195
[2026-03-04 14:22:41] 2026-03-04 13:21:50,437 | INFO     | process IDs to be killed: [2446195] (in reverse order)
[2026-03-04 14:22:41] 2026-03-04 13:21:50,580 | WARNING  | found no corresponding commands to process id(s)
[2026-03-04 14:22:41] 2026-03-04 13:21:50,580 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-04 14:22:41] 2026-03-04 13:21:50,596 | INFO     | did not find any defunct processes belonging to 2446195
[2026-03-04 14:22:41] 2026-03-04 13:21:50,605 | INFO     | did not find any defunct processes belonging to 2446195
[2026-03-04 14:22:41] 2026-03-04 13:21:50,606 | INFO     | ready for new job
[2026-03-04 14:22:41] 2026-03-04 13:21:50,606 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-04 14:22:41] 2026-03-04 13:21:50,607 | INFO     | **************************************
[2026-03-04 14:22:41] 2026-03-04 13:21:50,607 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-04 14:22:41] 2026-03-04 13:21:50,607 | INFO     | **************************************
[2026-03-04 14:22:41] 2026-03-04 13:21:50,607 | INFO     | 
[2026-03-04 14:22:41] 2026-03-04 13:21:50,613 | INFO     | architecture information:
[2026-03-04 14:22:41] 2026-03-04 13:21:50,613 | INFO     | executing command: cat /etc/os-release
[2026-03-04 14:22:41] 2026-03-04 13:21:50,631 | INFO     | cat /etc/os-release:
[2026-03-04 14:22:41] NAME="CentOS Linux"
[2026-03-04 14:22:41] VERSION="7 (Core)"
[2026-03-04 14:22:41] ID="centos"
[2026-03-04 14:22:41] ID_LIKE="rhel fedora"
[2026-03-04 14:22:41] VERSION_ID="7"
[2026-03-04 14:22:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-04 14:22:41] ANSI_COLOR="0;31"
[2026-03-04 14:22:41] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-04 14:22:41] HOME_URL="https://www.centos.org/"
[2026-03-04 14:22:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-04 14:22:41] 
[2026-03-04 14:22:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-04 14:22:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-04 14:22:41] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-04 14:22:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-04 14:22:41] 
[2026-03-04 14:22:41] 2026-03-04 13:21:50,632 | INFO     | **************************************
[2026-03-04 14:22:41] 2026-03-04 13:21:51,111 | WARNING  | process 2446195 can no longer be monitored (due to stat problems) - aborting
[2026-03-04 14:22:41] 2026-03-04 13:21:51,135 | INFO     | executing command: df -mP /scratch/boinc/var/slot92/slots/0
[2026-03-04 14:22:41] 2026-03-04 13:21:51,157 | INFO     | sufficient remaining disk space (3318522839040 B)
[2026-03-04 14:22:41] 2026-03-04 13:21:51,158 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-04 14:22:41] 2026-03-04 13:21:51,158 | INFO     | current server update state: UPDATING_FINAL
[2026-03-04 14:22:41] 2026-03-04 13:21:51,158 | INFO     | update_server=False
[2026-03-04 14:22:41] 2026-03-04 13:21:51,158 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-04 14:22:41] 2026-03-04 13:21:51,158 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-04 14:22:41] 2026-03-04 13:21:51,476 | INFO     | using path: /scratch/boinc/var/slot92/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-04 14:22:41] 2026-03-04 13:21:51,752 | INFO     | all payload control threads have been joined
[2026-03-04 14:22:41] 2026-03-04 13:21:51,826 | INFO     | number of running child processes to parent process 2446195: 1
[2026-03-04 14:22:41] 2026-03-04 13:21:51,827 | INFO     | maximum number of monitored processes: 6
[2026-03-04 14:22:41] 2026-03-04 13:21:51,827 | INFO     | aborting job monitoring since job object (job id=7036136311) has expired
[2026-03-04 14:22:41] 2026-03-04 13:21:51,827 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-04 14:22:41] 2026-03-04 13:21:51,827 | INFO     | will abort loop
[2026-03-04 14:22:41] 2026-03-04 13:21:52,090 | INFO     | all data control threads have been joined
[2026-03-04 14:22:41] 2026-03-04 13:21:52,164 | INFO     | [job] retrieve thread has finished
[2026-03-04 14:22:41] 2026-03-04 13:21:52,211 | INFO     | [payload] execute_payloads thread has finished
[2026-03-04 14:22:41] 2026-03-04 13:21:52,309 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-04 14:22:41] 2026-03-04 13:21:52,483 | INFO     | all job control threads have been joined
[2026-03-04 14:22:41] 2026-03-04 13:21:52,582 | INFO     | [job] validate thread has finished
[2026-03-04 14:22:41] 2026-03-04 13:21:52,712 | INFO     | [payload] validate_post thread has finished
[2026-03-04 14:22:41] 2026-03-04 13:21:52,730 | INFO     | [job] create_data_payload thread has finished
[2026-03-04 14:22:41] 2026-03-04 13:21:52,758 | INFO     | [payload] control thread has finished
[2026-03-04 14:22:41] 2026-03-04 13:21:52,832 | INFO     | [job] job monitor thread has finished
[2026-03-04 14:22:41] 2026-03-04 13:21:53,027 | INFO     | [payload] validate_pre thread has finished
[2026-03-04 14:22:41] 2026-03-04 13:21:53,096 | INFO     | [data] control thread has finished
[2026-03-04 14:22:41] 2026-03-04 13:21:53,164 | INFO     | [data] copytool_out thread has finished
[2026-03-04 14:22:41] 2026-03-04 13:21:53,480 | INFO     | [data] copytool_in thread has finished
[2026-03-04 14:22:41] 2026-03-04 13:21:53,487 | INFO     | [job] control thread has finished
[2026-03-04 14:22:41] 2026-03-04 13:21:53,755 | INFO     | [payload] failed_post thread has finished
[2026-03-04 14:22:41] 2026-03-04 13:21:54,075 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-04 14:22:41] 2026-03-04 13:21:54,493 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-04 14:22:41] 2026-03-04 13:21:55,080 | INFO     | [job] queue monitor thread has finished
[2026-03-04 14:22:41] 2026-03-04 13:21:58,500 | INFO     | [data] queue_monitor thread has finished
[2026-03-04 14:22:41] 2026-03-04 13:22:21,840 | INFO     | PID=2441110 has CPU usage=8.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-04 14:22:41] 2026-03-04 13:22:21,840 | INFO     | .. there are 17 such processes running
[2026-03-04 14:22:41] 2026-03-04 13:22:21,840 | INFO     | found 0 job(s) in 20 queues
[2026-03-04 14:22:41] 2026-03-04 13:22:21,841 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-04 14:22:41] 2026-03-04 13:22:21,841 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-04 14:22:41] 2026-03-04 13:22:34,589 | INFO     | [monitor] cgroup control has ended
[2026-03-04 14:22:41] 2026-03-04 13:22:36,613 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22532040644416)>', '<ExcThread(monitor, started 22531733976832)>']
[2026-03-04 14:22:41] 2026-03-04 13:22:36,907 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-04 14:22:41] 2026-03-04 13:22:36,907 | INFO     | [monitor] control thread has ended
[2026-03-04 14:22:41] 2026-03-04 13:22:41,635 | INFO     | all workflow threads have been joined
[2026-03-04 14:22:41] 2026-03-04 13:22:41,635 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-04 14:22:41] 2026-03-04 13:22:41,635 | INFO     | traces error code: 0
[2026-03-04 14:22:41] 2026-03-04 13:22:41,636 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-04 14:22:41] 2026-03-04 13:22:41,794 [wrapper] ==== pilot stdout END ====
[2026-03-04 14:22:41] 2026-03-04 13:22:41,798 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-04 14:22:41] 2026-03-04 13:22:41,801 [wrapper] pilotpid: 2441110
[2026-03-04 14:22:41] 2026-03-04 13:22:41,803 [wrapper] Pilot exit status: 0
[2026-03-04 14:22:41] 2026-03-04 13:22:41,814 [wrapper] pandaids: 7036136311
[2026-03-04 14:22:41] 2026-03-04 13:22:41,900 [wrapper] cleanup supervisor_pilot 2688076 2441111
[2026-03-04 14:22:41] 2026-03-04 13:22:41,903 [wrapper] Test setup, not cleaning
[2026-03-04 14:22:41] 2026-03-04 13:22:41,906 [wrapper] apfmon messages muted
[2026-03-04 14:22:41] 2026-03-04 13:22:41,908 [wrapper] ==== wrapper stdout END ====
[2026-03-04 14:22:41] 2026-03-04 13:22:41,911 [wrapper] ==== wrapper stderr END ====
[2026-03-04 14:22:41]  *** Error codes and diagnostics ***
[2026-03-04 14:22:41]     "exeErrorCode": 0,
[2026-03-04 14:22:41]     "exeErrorDiag": "",
[2026-03-04 14:22:41]     "pilotErrorCode": 0,
[2026-03-04 14:22:41]     "pilotErrorDiag": "",
[2026-03-04 14:22:41]  *** Listing of results directory ***
[2026-03-04 14:22:41] total 512804
[2026-03-04 14:22:41] -rw-r--r-- 1 boinc boinc    584627 Mar  3 00:56 pilot3.tar.gz
[2026-03-04 14:22:41] -rw-r--r-- 1 boinc boinc      5111 Mar  3 00:57 queuedata.json
[2026-03-04 14:22:41] -rwx------ 1 boinc boinc     36322 Mar  3 00:58 runpilot2-wrapper.sh
[2026-03-04 14:22:41] -rw-r--r-- 1 boinc boinc       100 Mar  4 12:13 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-04 14:22:41] -rwxr-xr-x 1 boinc boinc      7986 Mar  4 12:13 run_atlas
[2026-03-04 14:22:41] -rw-r--r-- 1 boinc boinc       105 Mar  4 12:13 job.xml
[2026-03-04 14:22:41] -rw-r--r-- 2 boinc boinc 288657706 Mar  4 12:14 EVNT.48220205._000200.pool.root.1
[2026-03-04 14:22:41] -rw-r--r-- 1 boinc boinc      6699 Mar  4 12:14 init_data.xml
[2026-03-04 14:22:41] -rw-r--r-- 2 boinc boinc     15845 Mar  4 12:14 start_atlas.sh
[2026-03-04 14:22:41] drwxrwx--x 2 boinc boinc      4096 Mar  4 12:14 shared
[2026-03-04 14:22:41] -rw-r--r-- 2 boinc boinc    597960 Mar  4 12:14 input.tar.gz
[2026-03-04 14:22:41] -rw-r--r-- 1 boinc boinc         0 Mar  4 12:14 boinc_lockfile
[2026-03-04 14:22:41] -rw-r--r-- 1 boinc boinc      2588 Mar  4 12:14 pandaJob.out
[2026-03-04 14:22:41] -rw------- 1 boinc boinc    997376 Mar  4 12:14 agis_schedconf.cvmfs.json
[2026-03-04 14:22:41] -rw------- 1 boinc boinc   1516092 Mar  4 12:14 agis_ddmendpoints.agis.ALL.json
[2026-03-04 14:22:41] -rw------- 1 boinc boinc       443 Mar  4 12:14 workernode_map.json
[2026-03-04 14:22:41] drwx------ 5 boinc boinc      4096 Mar  4 12:14 pilot3
[2026-03-04 14:22:41] -rw------- 1 boinc boinc 229708287 Mar  4 14:21 HITS.48838581._004772.pool.root.1
[2026-03-04 14:22:41] -rw-r--r-- 1 boinc boinc       530 Mar  4 14:21 boinc_task_state.xml
[2026-03-04 14:22:41] -rw------- 1 boinc boinc        95 Mar  4 14:21 pilot_heartbeat.json
[2026-03-04 14:22:41] -rw------- 1 boinc boinc      1023 Mar  4 14:21 memory_monitor_summary.json
[2026-03-04 14:22:41] -rw------- 1 boinc boinc    313992 Mar  4 14:21 log.48838581._004772.job.log.tgz.1
[2026-03-04 14:22:41] -rw------- 1 boinc boinc      6345 Mar  4 14:21 heartbeat.json
[2026-03-04 14:22:41] -rw-r--r-- 1 boinc boinc      8192 Mar  4 14:22 boinc_mmap_file
[2026-03-04 14:22:41] -rw-r--r-- 1 boinc boinc        27 Mar  4 14:22 wrapper_checkpoint.txt
[2026-03-04 14:22:41] -rw------- 1 boinc boinc      5363 Mar  4 14:22 pilotlog.txt
[2026-03-04 14:22:41] -rw------- 1 boinc boinc   1088304 Mar  4 14:22 log.48838581._004772.job.log.1
[2026-03-04 14:22:41] -rw------- 1 boinc boinc       357 Mar  4 14:22 output.list
[2026-03-04 14:22:41] -rw-r--r-- 1 boinc boinc       620 Mar  4 14:22 runtime_log
[2026-03-04 14:22:41] -rw------- 1 boinc boinc   1423360 Mar  4 14:22 result.tar.gz
[2026-03-04 14:22:41] -rw-r--r-- 1 boinc boinc      9204 Mar  4 14:22 runtime_log.err
[2026-03-04 14:22:41] -rw------- 1 boinc boinc       662 Mar  4 14:22 hNoLDmZKSH9n9Rq4apOajLDm4fhM0noT9bVooX4SDmC4CLDmDBvzmm.diag
[2026-03-04 14:22:41] -rw-r--r-- 1 boinc boinc     20820 Mar  4 14:22 stderr.txt
[2026-03-04 14:22:41] HITS file was successfully produced:
[2026-03-04 14:22:41] -rw------- 1 boinc boinc 229708287 Mar  4 14:21 shared/HITS.pool.root.1
[2026-03-04 14:22:41]  *** Contents of shared directory: ***
[2026-03-04 14:22:41] total 508224
[2026-03-04 14:22:41] -rw-r--r-- 2 boinc boinc 288657706 Mar  4 12:14 ATLAS.root_0
[2026-03-04 14:22:41] -rw-r--r-- 2 boinc boinc     15845 Mar  4 12:14 start_atlas.sh
[2026-03-04 14:22:41] -rw-r--r-- 2 boinc boinc    597960 Mar  4 12:14 input.tar.gz
[2026-03-04 14:22:41] -rw------- 1 boinc boinc 229708287 Mar  4 14:21 HITS.pool.root.1
[2026-03-04 14:22:41] -rw------- 1 boinc boinc   1423360 Mar  4 14:22 result.tar.gz
14:22:43 (2436794): run_atlas exited; CPU time 29614.768649
14:22:43 (2436794): called boinc_finish(0)

</stderr_txt>
]]>

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