Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
11:25:07 (1355848): wrapper (7.7.26015): starting
11:25:07 (1355848): wrapper: running run_atlas (--nthreads 3)
[2026-03-04 11:25:07] Arguments: --nthreads 3
[2026-03-04 11:25:07] Threads: 3
[2026-03-04 11:25:07] Checking for CVMFS
[2026-03-04 11:25:07] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-04 11:25:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-04 11:25:07] Running cvmfs_config stat atlas.cern.ch
[2026-03-04 11:25:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-04 11:25:08] 2.9.2.0 35661 9828 85552 156878 2 49 22794104 36864001 0 130560 0 3747890 99.981 378407 7689 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-04 11:25:08] CVMFS is ok
[2026-03-04 11:25:08] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-04 11:25:08] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-04 11:25:08] Further information can be found at the LHC@home message board.
[2026-03-04 11:25:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-04 11:25:08] Checking for apptainer binary...
[2026-03-04 11:25:08] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-04 11:25:08] Running /usr/bin/apptainer --version
[2026-03-04 11:25:08] apptainer version 1.4.1-1.1
[2026-03-04 11:25:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-04 11:25:08] magicA250a
[2026-03-04 11:25:08] apptainer works
[2026-03-04 11:25:08] Set ATHENA_PROC_NUMBER=3
[2026-03-04 11:25:08] Set ATHENA_CORE_NUMBER=3
[2026-03-04 11:25:08] Starting ATLAS job with PandaID=7036278034
[2026-03-04 11:25:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-04 13:04:29]  *** The last 200 lines of the pilot log: ***
[2026-03-04 13:04:29] 2026-03-04 12:03:58,602 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-04 13:04:29] 2026-03-04 12:03:58,602 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-04 13:04:29] 2026-03-04 12:03:58,602 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-04 13:04:29] 2026-03-04 12:03:58,602 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-04 13:04:29] 2026-03-04 12:03:58,602 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-04 13:04:29] 2026-03-04 12:03:58,602 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-04 13:04:29] 2026-03-04 12:03:58,602 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-04 13:04:29] 2026-03-04 12:03:58,602 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-04 13:04:29] 2026-03-04 12:03:58,602 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-04 13:04:29] 2026-03-04 12:03:58,602 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-04 13:04:29] 2026-03-04 12:03:58,602 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-04 13:04:29] 2026-03-04 12:03:58,602 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-04 13:04:29] 2026-03-04 12:03:58,602 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-04 13:04:29] 2026-03-04 12:03:58,602 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-04 13:04:29] 2026-03-04 12:03:58,602 | INFO     | job 7036278034 has completed (purged errors)
[2026-03-04 13:04:29] 2026-03-04 12:03:58,602 | INFO     | overall cleanup function is called
[2026-03-04 13:04:29] 2026-03-04 12:03:59,609 | INFO     | --- collectZombieJob: --- 10, [1364320]
[2026-03-04 13:04:29] 2026-03-04 12:03:59,609 | INFO     | zombie collector waiting for pid 1364320
[2026-03-04 13:04:29] 2026-03-04 12:03:59,609 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-04 13:04:29] 2026-03-04 12:03:59,609 | INFO     | collected zombie processes
[2026-03-04 13:04:29] 2026-03-04 12:03:59,609 | INFO     | will attempt to kill all subprocesses of pid=1364320
[2026-03-04 13:04:29] 2026-03-04 12:03:59,650 | INFO     | process IDs to be killed: [1364320] (in reverse order)
[2026-03-04 13:04:29] 2026-03-04 12:03:59,673 | WARNING  | found no corresponding commands to process id(s)
[2026-03-04 13:04:29] 2026-03-04 12:03:59,674 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-04 13:04:29] 2026-03-04 12:03:59,675 | INFO     | did not find any defunct processes belonging to 1364320
[2026-03-04 13:04:29] 2026-03-04 12:03:59,676 | INFO     | did not find any defunct processes belonging to 1364320
[2026-03-04 13:04:29] 2026-03-04 12:03:59,676 | INFO     | ready for new job
[2026-03-04 13:04:29] 2026-03-04 12:03:59,676 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-04 13:04:29] 2026-03-04 12:03:59,677 | INFO     | **************************************
[2026-03-04 13:04:29] 2026-03-04 12:03:59,677 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-04 13:04:29] 2026-03-04 12:03:59,677 | INFO     | **************************************
[2026-03-04 13:04:29] 2026-03-04 12:03:59,677 | INFO     | 
[2026-03-04 13:04:29] 2026-03-04 12:03:59,677 | INFO     | architecture information:
[2026-03-04 13:04:29] 2026-03-04 12:03:59,677 | INFO     | executing command: cat /etc/os-release
[2026-03-04 13:04:29] 2026-03-04 12:03:59,686 | INFO     | cat /etc/os-release:
[2026-03-04 13:04:29] NAME="CentOS Linux"
[2026-03-04 13:04:29] VERSION="7 (Core)"
[2026-03-04 13:04:29] ID="centos"
[2026-03-04 13:04:29] ID_LIKE="rhel fedora"
[2026-03-04 13:04:29] VERSION_ID="7"
[2026-03-04 13:04:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-04 13:04:29] ANSI_COLOR="0;31"
[2026-03-04 13:04:29] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-04 13:04:29] HOME_URL="https://www.centos.org/"
[2026-03-04 13:04:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-04 13:04:29] 
[2026-03-04 13:04:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-04 13:04:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-04 13:04:29] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-04 13:04:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-04 13:04:29] 
[2026-03-04 13:04:29] 2026-03-04 12:03:59,686 | INFO     | **************************************
[2026-03-04 13:04:29] 2026-03-04 12:04:00,189 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-04 13:04:29] 2026-03-04 12:04:00,201 | INFO     | sufficient remaining disk space (336596041728 B)
[2026-03-04 13:04:29] 2026-03-04 12:04:00,201 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-04 13:04:29] 2026-03-04 12:04:00,201 | INFO     | current server update state: UPDATING_FINAL
[2026-03-04 13:04:29] 2026-03-04 12:04:00,201 | INFO     | update_server=False
[2026-03-04 13:04:29] 2026-03-04 12:04:00,201 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-04 13:04:29] 2026-03-04 12:04:00,201 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-04 13:04:29] 2026-03-04 12:04:00,279 | INFO     | all data control threads have been joined
[2026-03-04 13:04:29] 2026-03-04 12:04:00,525 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-04 13:04:29] 2026-03-04 12:04:00,603 | INFO     | all job control threads have been joined
[2026-03-04 13:04:29] 2026-03-04 12:04:01,099 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-04 13:04:29] 2026-03-04 12:04:01,099 | INFO     | aborting loop
[2026-03-04 13:04:29] 2026-03-04 12:04:01,202 | INFO     | all payload control threads have been joined
[2026-03-04 13:04:29] 2026-03-04 12:04:01,207 | INFO     | [job] retrieve thread has finished
[2026-03-04 13:04:29] 2026-03-04 12:04:01,207 | INFO     | [job] queue monitor thread has finished
[2026-03-04 13:04:29] 2026-03-04 12:04:01,209 | INFO     | [payload] failed_post thread has finished
[2026-03-04 13:04:29] 2026-03-04 12:04:01,285 | INFO     | [data] control thread has finished
[2026-03-04 13:04:29] 2026-03-04 12:04:01,330 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-04 13:04:29] 2026-03-04 12:04:01,472 | INFO     | [job] create_data_payload thread has finished
[2026-03-04 13:04:29] 2026-03-04 12:04:01,609 | INFO     | [job] control thread has finished
[2026-03-04 13:04:29] 2026-03-04 12:04:01,628 | INFO     | [job] validate thread has finished
[2026-03-04 13:04:29] 2026-03-04 12:04:01,738 | INFO     | [payload] validate_pre thread has finished
[2026-03-04 13:04:29] 2026-03-04 12:04:01,869 | INFO     | [data] copytool_in thread has finished
[2026-03-04 13:04:29] 2026-03-04 12:04:01,888 | INFO     | [payload] execute_payloads thread has finished
[2026-03-04 13:04:29] 2026-03-04 12:04:02,104 | INFO     | [job] job monitor thread has finished
[2026-03-04 13:04:29] 2026-03-04 12:04:02,159 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-04 13:04:29] 2026-03-04 12:04:02,208 | INFO     | [payload] control thread has finished
[2026-03-04 13:04:29] 2026-03-04 12:04:02,427 | INFO     | [payload] validate_post thread has finished
[2026-03-04 13:04:29] 2026-03-04 12:04:02,531 | INFO     | [data] copytool_out thread has finished
[2026-03-04 13:04:29] 2026-03-04 12:04:06,166 | INFO     | [data] queue_monitor thread has finished
[2026-03-04 13:04:29] 2026-03-04 12:04:23,824 | INFO     | [monitor] cgroup control has ended
[2026-03-04 13:04:29] 2026-03-04 12:04:24,172 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140177511003968)>', '<ExcThread(monitor, started 140177146091264)>']
[2026-03-04 13:04:29] 2026-03-04 12:04:29,173 | INFO     | all workflow threads have been joined
[2026-03-04 13:04:29] 2026-03-04 12:04:29,173 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-04 13:04:29] 2026-03-04 12:04:29,173 | INFO     | traces error code: 0
[2026-03-04 13:04:29] 2026-03-04 12:04:29,174 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-04 13:04:29] 2026-03-04 12:04:29,793 | INFO     | PID=1359889 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-04 13:04:29] 2026-03-04 12:04:29,793 | INFO     | found 0 job(s) in 20 queues
[2026-03-04 13:04:29] 2026-03-04 12:04:29,793 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-04 13:04:29] 2026-03-04 12:04:29,793 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-04 13:04:29] 2026-03-04 12:04:29,794 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-04 13:04:29] 2026-03-04 12:04:29,794 | INFO     | [monitor] control thread has ended
[2026-03-04 13:04:29] 2026-03-04 12:04:29,839 [wrapper] ==== pilot stdout END ====
[2026-03-04 13:04:29] 2026-03-04 12:04:29,841 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-04 13:04:29] 2026-03-04 12:04:29,844 [wrapper] pilotpid: 1359889
[2026-03-04 13:04:29] 2026-03-04 12:04:29,846 [wrapper] Pilot exit status: 0
[2026-03-04 13:04:29] 2026-03-04 12:04:29,853 [wrapper] pandaids: 7036278034
[2026-03-04 13:04:29] 2026-03-04 12:04:29,869 [wrapper] cleanup supervisor_pilot 1369840 1359890
[2026-03-04 13:04:29] 2026-03-04 12:04:29,871 [wrapper] Test setup, not cleaning
[2026-03-04 13:04:29] 2026-03-04 12:04:29,874 [wrapper] apfmon messages muted
[2026-03-04 13:04:29] 2026-03-04 12:04:29,876 [wrapper] ==== wrapper stdout END ====
[2026-03-04 13:04:29] 2026-03-04 12:04:29,878 [wrapper] ==== wrapper stderr END ====
[2026-03-04 13:04:29]  *** Error codes and diagnostics ***
[2026-03-04 13:04:29]     "exeErrorCode": 0,
[2026-03-04 13:04:29]     "exeErrorDiag": "",
[2026-03-04 13:04:29]     "pilotErrorCode": 0,
[2026-03-04 13:04:29]     "pilotErrorDiag": "",
[2026-03-04 13:04:29]  *** Listing of results directory ***
[2026-03-04 13:04:29] total 508600
[2026-03-04 13:04:29] -rw-r--r-- 1 boinc boinc    584627 Mar  3 12:44 pilot3.tar.gz
[2026-03-04 13:04:29] -rwx------ 1 boinc boinc     36322 Mar  3 12:47 runpilot2-wrapper.sh
[2026-03-04 13:04:29] -rw-r--r-- 1 boinc boinc      5111 Mar  3 12:50 queuedata.json
[2026-03-04 13:04:29] -rw-r--r-- 1 boinc boinc       100 Mar  4 11:25 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-04 13:04:29] -rwxr-xr-x 1 boinc boinc      7986 Mar  4 11:25 run_atlas
[2026-03-04 13:04:29] -rw-r--r-- 1 boinc boinc       105 Mar  4 11:25 job.xml
[2026-03-04 13:04:29] -rw-r--r-- 2 boinc boinc 289019792 Mar  4 11:25 EVNT.48220205._000238.pool.root.1
[2026-03-04 13:04:29] -rw-r--r-- 2 boinc boinc    597962 Mar  4 11:25 input.tar.gz
[2026-03-04 13:04:29] -rw-r--r-- 2 boinc boinc     15845 Mar  4 11:25 start_atlas.sh
[2026-03-04 13:04:29] drwxrwx--x 2 boinc boinc      4096 Mar  4 11:25 shared
[2026-03-04 13:04:29] -rw-r--r-- 1 boinc boinc         0 Mar  4 11:25 boinc_setup_complete
[2026-03-04 13:04:29] -rw-r--r-- 1 boinc boinc      6444 Mar  4 11:25 init_data.xml
[2026-03-04 13:04:29] -rw-r--r-- 1 boinc boinc         0 Mar  4 11:25 boinc_lockfile
[2026-03-04 13:04:29] -rw-r--r-- 1 boinc boinc      2588 Mar  4 11:25 pandaJob.out
[2026-03-04 13:04:29] -rw------- 1 boinc boinc    997376 Mar  4 11:25 agis_schedconf.cvmfs.json
[2026-03-04 13:04:29] -rw------- 1 boinc boinc   1516092 Mar  4 11:25 agis_ddmendpoints.agis.ALL.json
[2026-03-04 13:04:29] -rw------- 1 boinc boinc       431 Mar  4 11:25 workernode_map.json
[2026-03-04 13:04:29] drwx------ 5 boinc boinc      4096 Mar  4 11:25 pilot3
[2026-03-04 13:04:29] -rw------- 1 boinc boinc 225593098 Mar  4 13:03 HITS.48838581._005738.pool.root.1
[2026-03-04 13:04:29] -rw------- 1 boinc boinc        95 Mar  4 13:03 pilot_heartbeat.json
[2026-03-04 13:04:29] -rw-r--r-- 1 boinc boinc       529 Mar  4 13:03 boinc_task_state.xml
[2026-03-04 13:04:29] -rw------- 1 boinc boinc      1021 Mar  4 13:03 memory_monitor_summary.json
[2026-03-04 13:04:29] -rw------- 1 boinc boinc    275593 Mar  4 13:03 log.48838581._005738.job.log.tgz.1
[2026-03-04 13:04:29] -rw------- 1 boinc boinc      6327 Mar  4 13:03 heartbeat.json
[2026-03-04 13:04:29] -rw-r--r-- 1 boinc boinc      8192 Mar  4 13:04 boinc_mmap_file
[2026-03-04 13:04:29] -rw-r--r-- 1 boinc boinc        27 Mar  4 13:04 wrapper_checkpoint.txt
[2026-03-04 13:04:29] -rw------- 1 boinc boinc       747 Mar  4 13:04 pilotlog.txt
[2026-03-04 13:04:29] -rw------- 1 boinc boinc    858910 Mar  4 13:04 log.48838581._005738.job.log.1
[2026-03-04 13:04:29] -rw------- 1 boinc boinc       357 Mar  4 13:04 output.list
[2026-03-04 13:04:29] -rw-r--r-- 1 boinc boinc       620 Mar  4 13:04 runtime_log
[2026-03-04 13:04:29] -rw------- 1 boinc boinc   1157120 Mar  4 13:04 result.tar.gz
[2026-03-04 13:04:29] -rw-r--r-- 1 boinc boinc      8916 Mar  4 13:04 runtime_log.err
[2026-03-04 13:04:29] -rw------- 1 boinc boinc       661 Mar  4 13:04 nAeNDmHPdH9n9Rq4apOajLDm4fhM0noT9bVooX4SDmgRELDmO3qjWm.diag
[2026-03-04 13:04:29] -rw-r--r-- 1 boinc boinc     12245 Mar  4 13:04 stderr.txt
[2026-03-04 13:04:29] HITS file was successfully produced:
[2026-03-04 13:04:29] -rw------- 1 boinc boinc 225593098 Mar  4 13:03 shared/HITS.pool.root.1
[2026-03-04 13:04:29]  *** Contents of shared directory: ***
[2026-03-04 13:04:29] total 504296
[2026-03-04 13:04:29] -rw-r--r-- 2 boinc boinc 289019792 Mar  4 11:25 ATLAS.root_0
[2026-03-04 13:04:29] -rw-r--r-- 2 boinc boinc    597962 Mar  4 11:25 input.tar.gz
[2026-03-04 13:04:29] -rw-r--r-- 2 boinc boinc     15845 Mar  4 11:25 start_atlas.sh
[2026-03-04 13:04:29] -rw------- 1 boinc boinc 225593098 Mar  4 13:03 HITS.pool.root.1
[2026-03-04 13:04:29] -rw------- 1 boinc boinc   1157120 Mar  4 13:04 result.tar.gz
13:04:31 (1355848): run_atlas exited; CPU time 17077.215388
13:04:31 (1355848): called boinc_finish(0)

</stderr_txt>
]]>

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