Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
03:29:41 (457896): wrapper (7.7.26015): starting
03:29:41 (457896): wrapper: running run_atlas (--nthreads 4)
[2026-03-04 03:29:41] Arguments: --nthreads 4
[2026-03-04 03:29:41] Threads: 4
[2026-03-04 03:29:41] Checking for CVMFS
[2026-03-04 03:29:41] No cvmfs_config command found, will try listing directly
[2026-03-04 03:29:41] CVMFS is ok
[2026-03-04 03:29:41] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-04 03:29:41] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-04 03:29:41] Further information can be found at the LHC@home message board.
[2026-03-04 03:29:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-04 03:29:41] Checking for apptainer binary...
[2026-03-04 03:29:41] which: no apptainer in ((null))
[2026-03-04 03:29:41] apptainer is not installed, using version from CVMFS
[2026-03-04 03:29:41] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-04 03:29:42] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot68/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut17.grid.cesnet.cz
[2026-03-04 03:29:42] apptainer works
[2026-03-04 03:29:42] Set ATHENA_PROC_NUMBER=4
[2026-03-04 03:29:42] Set ATHENA_CORE_NUMBER=4
[2026-03-04 03:29:42] Starting ATLAS job with PandaID=7036277652
[2026-03-04 03:29:42] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot68/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-04 05:19:17]  *** The last 200 lines of the pilot log: ***
[2026-03-04 05:19:17] 2026-03-04 04:18:24,570 | INFO     | extracted standard info from prmon json
[2026-03-04 05:19:17] 2026-03-04 04:18:24,570 | INFO     | extracted standard memory fields from prmon json
[2026-03-04 05:19:17] 2026-03-04 04:18:24,570 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-04 05:19:17] 2026-03-04 04:18:24,571 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-04 05:19:17] 2026-03-04 04:18:24,571 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-04 05:19:17] 2026-03-04 04:18:24,573 | INFO     | fitting pss+swap vs Time
[2026-03-04 05:19:17] 2026-03-04 04:18:24,574 | INFO     | sum of square deviations: 379832238.0
[2026-03-04 05:19:17] 2026-03-04 04:18:24,574 | INFO     | sum of deviations: 1160331264.0000067
[2026-03-04 05:19:17] 2026-03-04 04:18:24,574 | INFO     | mean x: 1772594659.0
[2026-03-04 05:19:17] 2026-03-04 04:18:24,574 | INFO     | mean y: 2284897.38317757
[2026-03-04 05:19:17] 2026-03-04 04:18:24,574 | INFO     | intersect: -5412729404.897112
[2026-03-04 05:19:17] 2026-03-04 04:18:24,575 | INFO     | chi2: 2.00578432872941
[2026-03-04 05:19:17] 2026-03-04 04:18:24,575 | INFO     | sum of square deviations: 329031285.5
[2026-03-04 05:19:17] 2026-03-04 04:18:24,575 | INFO     | sum of deviations: 7461587435.500005
[2026-03-04 05:19:17] 2026-03-04 04:18:24,576 | INFO     | mean x: 1772594506.5
[2026-03-04 05:19:17] 2026-03-04 04:18:24,576 | INFO     | mean y: 2303072.8333333335
[2026-03-04 05:19:17] 2026-03-04 04:18:24,576 | INFO     | intersect: -40195603572.54167
[2026-03-04 05:19:17] 2026-03-04 04:18:24,576 | INFO     | chi2: 1.2403342574436846
[2026-03-04 05:19:17] 2026-03-04 04:18:24,576 | INFO     | current chi2=1.2403342574436846 (change=38.16213240486377 %)
[2026-03-04 05:19:17] 2026-03-04 04:18:24,576 | INFO     | sum of square deviations: 282974608.0
[2026-03-04 05:19:17] 2026-03-04 04:18:24,577 | INFO     | sum of deviations: 7168340274.999999
[2026-03-04 05:19:17] 2026-03-04 04:18:24,577 | INFO     | mean x: 1772594354.0
[2026-03-04 05:19:17] 2026-03-04 04:18:24,577 | INFO     | mean y: 2302104.6597938146
[2026-03-04 05:19:17] 2026-03-04 04:18:24,577 | INFO     | intersect: -44901230367.11522
[2026-03-04 05:19:17] 2026-03-04 04:18:24,577 | INFO     | chi2: 1.2428643163095665
[2026-03-04 05:19:17] 2026-03-04 04:18:24,577 | INFO     | current chi2=1.2428643163095665 (change=-0.20398201941920815 %)
[2026-03-04 05:19:17] 2026-03-04 04:18:24,578 | INFO     | right removable region: 96
[2026-03-04 05:19:17] 2026-03-04 04:18:24,578 | INFO     | sum of square deviations: 329031285.5
[2026-03-04 05:19:17] 2026-03-04 04:18:24,578 | INFO     | sum of deviations: -10441251568.5
[2026-03-04 05:19:17] 2026-03-04 04:18:24,578 | INFO     | mean x: 1772594811.5
[2026-03-04 05:19:17] 2026-03-04 04:18:24,578 | INFO     | mean y: 2318752.4411764704
[2026-03-04 05:19:17] 2026-03-04 04:18:24,579 | INFO     | intersect: 56252618257.43867
[2026-03-04 05:19:17] 2026-03-04 04:18:24,579 | INFO     | chi2: 0.8062201895931738
[2026-03-04 05:19:17] 2026-03-04 04:18:24,579 | INFO     | current chi2=0.8062201895931738 (change=59.805240371785914 %)
[2026-03-04 05:19:17] 2026-03-04 04:18:24,579 | INFO     | sum of square deviations: 282974608.0
[2026-03-04 05:19:17] 2026-03-04 04:18:24,580 | INFO     | sum of deviations: -9693869351.0
[2026-03-04 05:19:17] 2026-03-04 04:18:24,580 | INFO     | mean x: 1772594964.0
[2026-03-04 05:19:17] 2026-03-04 04:18:24,580 | INFO     | mean y: 2316264.7319587627
[2026-03-04 05:19:17] 2026-03-04 04:18:24,580 | INFO     | intersect: 60726153342.21471
[2026-03-04 05:19:17] 2026-03-04 04:18:24,580 | INFO     | chi2: 0.8072544228600356
[2026-03-04 05:19:17] 2026-03-04 04:18:24,580 | INFO     | current chi2=0.8072544228600356 (change=-0.12828173744739507 %)
[2026-03-04 05:19:17] 2026-03-04 04:18:24,580 | INFO     | left removable region: 20
[2026-03-04 05:19:17] 2026-03-04 04:18:24,580 | INFO     | sum of square deviations: 136095575.0
[2026-03-04 05:19:17] 2026-03-04 04:18:24,581 | INFO     | sum of deviations: -1999947189.5
[2026-03-04 05:19:17] 2026-03-04 04:18:24,581 | INFO     | mean x: 1772594933.5
[2026-03-04 05:19:17] 2026-03-04 04:18:24,581 | INFO     | mean y: 2333118.9078947366
[2026-03-04 05:19:17] 2026-03-04 04:18:24,581 | INFO     | intersect: 26050911519.603615
[2026-03-04 05:19:17] 2026-03-04 04:18:24,581 | INFO     | chi2: 0.005323075768222894
[2026-03-04 05:19:17] 2026-03-04 04:18:24,582 | INFO     | current memory leak: -14.70 B/s (using 76 data points, chi2=0.01)
[2026-03-04 05:19:17] 2026-03-04 04:18:24,582 | INFO     | could have reported an average CPU frequency of 2739 MHz (7 samples)
[2026-03-04 05:19:17] 2026-03-04 04:18:24,582 | INFO     | ..............................
[2026-03-04 05:19:17] 2026-03-04 04:18:24,582 | INFO     | . Timing measurements:
[2026-03-04 05:19:17] 2026-03-04 04:18:24,582 | INFO     | . get job = 0 s
[2026-03-04 05:19:17] 2026-03-04 04:18:24,582 | INFO     | . initial setup = 7 s
[2026-03-04 05:19:17] 2026-03-04 04:18:24,583 | INFO     | . payload setup = 7 s
[2026-03-04 05:19:17] 2026-03-04 04:18:24,583 | INFO     | . stage-in = 0 s
[2026-03-04 05:19:17] 2026-03-04 04:18:24,583 | INFO     | . payload execution = 6477 s
[2026-03-04 05:19:17] 2026-03-04 04:18:24,583 | INFO     | . stage-out = 0 s
[2026-03-04 05:19:17] 2026-03-04 04:18:24,583 | INFO     | . log creation = 0 s
[2026-03-04 05:19:17] 2026-03-04 04:18:24,583 | INFO     | ..............................
[2026-03-04 05:19:17] 2026-03-04 04:18:24,889 | INFO     | 
[2026-03-04 05:19:17] 2026-03-04 04:18:24,889 | INFO     | job summary report
[2026-03-04 05:19:17] 2026-03-04 04:18:24,890 | INFO     | --------------------------------------------------
[2026-03-04 05:19:17] 2026-03-04 04:18:24,890 | INFO     | PanDA job id: 7036277652
[2026-03-04 05:19:17] 2026-03-04 04:18:24,890 | INFO     | task id: 48700946
[2026-03-04 05:19:17] 2026-03-04 04:18:24,890 | INFO     | errors: (none)
[2026-03-04 05:19:17] 2026-03-04 04:18:24,890 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-04 05:19:17] 2026-03-04 04:18:24,890 | INFO     | pilot state: finished 
[2026-03-04 05:19:17] 2026-03-04 04:18:24,890 | INFO     | transexitcode: 0
[2026-03-04 05:19:17] 2026-03-04 04:18:24,890 | INFO     | exeerrorcode: 0
[2026-03-04 05:19:17] 2026-03-04 04:18:24,890 | INFO     | exeerrordiag: 
[2026-03-04 05:19:17] 2026-03-04 04:18:24,890 | INFO     | exitcode: 0
[2026-03-04 05:19:17] 2026-03-04 04:18:24,890 | INFO     | exitmsg: OK
[2026-03-04 05:19:17] 2026-03-04 04:18:24,891 | INFO     | cpuconsumptiontime: 24502 s
[2026-03-04 05:19:17] 2026-03-04 04:18:24,891 | INFO     | nevents: 400
[2026-03-04 05:19:17] 2026-03-04 04:18:24,891 | INFO     | neventsw: 0
[2026-03-04 05:19:17] 2026-03-04 04:18:24,891 | INFO     | pid: 467665
[2026-03-04 05:19:17] 2026-03-04 04:18:24,891 | INFO     | pgrp: 467665
[2026-03-04 05:19:17] 2026-03-04 04:18:24,891 | INFO     | corecount: 4
[2026-03-04 05:19:17] 2026-03-04 04:18:24,891 | INFO     | event service: False
[2026-03-04 05:19:17] 2026-03-04 04:18:24,891 | INFO     | sizes: {0: 2286571, 1: 2287032, 11: 2287032, 6488: 2314272, 6489: 2323292, 6490: 2323348, 6492: 2323670}
[2026-03-04 05:19:17] 2026-03-04 04:18:24,891 | INFO     | --------------------------------------------------
[2026-03-04 05:19:17] 2026-03-04 04:18:24,891 | INFO     | 
[2026-03-04 05:19:17] 2026-03-04 04:18:24,892 | INFO     | executing command: ls -lF /scratch/boinc/var/slot68/slots/0
[2026-03-04 05:19:17] 2026-03-04 04:18:24,921 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-04 05:19:17] 2026-03-04 04:18:24,922 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-04 05:19:17] 2026-03-04 04:18:24,922 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-04 05:19:17] 2026-03-04 04:18:24,922 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-04 05:19:17] 2026-03-04 04:18:24,922 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-04 05:19:17] 2026-03-04 04:18:24,922 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-04 05:19:17] 2026-03-04 04:18:24,922 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-04 05:19:17] 2026-03-04 04:18:24,922 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-04 05:19:17] 2026-03-04 04:18:24,922 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-04 05:19:17] 2026-03-04 04:18:24,923 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-04 05:19:17] 2026-03-04 04:18:24,923 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-04 05:19:17] 2026-03-04 04:18:24,923 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-04 05:19:17] 2026-03-04 04:18:24,923 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-04 05:19:17] 2026-03-04 04:18:24,923 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-04 05:19:17] 2026-03-04 04:18:24,923 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-04 05:19:17] 2026-03-04 04:18:24,923 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-04 05:19:17] 2026-03-04 04:18:24,923 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-04 05:19:17] 2026-03-04 04:18:24,923 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-04 05:19:17] 2026-03-04 04:18:24,923 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-04 05:19:17] 2026-03-04 04:18:24,924 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-04 05:19:17] 2026-03-04 04:18:24,924 | INFO     | job 7036277652 has completed (purged errors)
[2026-03-04 05:19:17] 2026-03-04 04:18:24,924 | INFO     | overall cleanup function is called
[2026-03-04 05:19:17] 2026-03-04 04:18:25,019 | WARNING  | process 467665 can no longer be monitored (due to stat problems) - aborting
[2026-03-04 05:19:17] 2026-03-04 04:18:25,479 | INFO     | using path: /scratch/boinc/var/slot68/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-04 05:19:17] 2026-03-04 04:18:25,931 | INFO     | --- collectZombieJob: --- 10, [467665]
[2026-03-04 05:19:17] 2026-03-04 04:18:25,931 | INFO     | zombie collector waiting for pid 467665
[2026-03-04 05:19:17] 2026-03-04 04:18:25,932 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-04 05:19:17] 2026-03-04 04:18:25,932 | INFO     | collected zombie processes
[2026-03-04 05:19:17] 2026-03-04 04:18:25,932 | INFO     | will attempt to kill all subprocesses of pid=467665
[2026-03-04 05:19:17] 2026-03-04 04:18:26,679 | INFO     | number of running child processes to parent process 467665: 1
[2026-03-04 05:19:17] 2026-03-04 04:18:26,680 | INFO     | maximum number of monitored processes: 6
[2026-03-04 05:19:17] 2026-03-04 04:18:26,680 | INFO     | aborting job monitoring since job object (job id=7036277652) has expired
[2026-03-04 05:19:17] 2026-03-04 04:18:27,027 | INFO     | process IDs to be killed: [467665] (in reverse order)
[2026-03-04 05:19:17] 2026-03-04 04:18:27,271 | WARNING  | found no corresponding commands to process id(s)
[2026-03-04 05:19:17] 2026-03-04 04:18:27,272 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-04 05:19:17] 2026-03-04 04:18:27,293 | INFO     | did not find any defunct processes belonging to 467665
[2026-03-04 05:19:17] 2026-03-04 04:18:27,310 | INFO     | did not find any defunct processes belonging to 467665
[2026-03-04 05:19:17] 2026-03-04 04:18:27,310 | INFO     | ready for new job
[2026-03-04 05:19:17] 2026-03-04 04:18:27,311 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-04 05:19:17] 2026-03-04 04:18:27,312 | INFO     | **************************************
[2026-03-04 05:19:17] 2026-03-04 04:18:27,313 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-04 05:19:17] 2026-03-04 04:18:27,313 | INFO     | **************************************
[2026-03-04 05:19:17] 2026-03-04 04:18:27,313 | INFO     | 
[2026-03-04 05:19:17] 2026-03-04 04:18:27,321 | INFO     | architecture information:
[2026-03-04 05:19:17] 2026-03-04 04:18:27,321 | INFO     | executing command: cat /etc/os-release
[2026-03-04 05:19:17] 2026-03-04 04:18:27,344 | INFO     | cat /etc/os-release:
[2026-03-04 05:19:17] NAME="CentOS Linux"
[2026-03-04 05:19:17] VERSION="7 (Core)"
[2026-03-04 05:19:17] ID="centos"
[2026-03-04 05:19:17] ID_LIKE="rhel fedora"
[2026-03-04 05:19:17] VERSION_ID="7"
[2026-03-04 05:19:17] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-04 05:19:17] ANSI_COLOR="0;31"
[2026-03-04 05:19:17] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-04 05:19:17] HOME_URL="https://www.centos.org/"
[2026-03-04 05:19:17] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-04 05:19:17] 
[2026-03-04 05:19:17] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-04 05:19:17] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-04 05:19:17] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-04 05:19:17] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-04 05:19:17] 
[2026-03-04 05:19:17] 2026-03-04 04:18:27,345 | INFO     | **************************************
[2026-03-04 05:19:17] 2026-03-04 04:18:27,848 | INFO     | executing command: df -mP /scratch/boinc/var/slot68/slots/0
[2026-03-04 05:19:17] 2026-03-04 04:18:27,873 | INFO     | sufficient remaining disk space (3323662958592 B)
[2026-03-04 05:19:17] 2026-03-04 04:18:27,873 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-04 05:19:17] 2026-03-04 04:18:27,873 | INFO     | current server update state: UPDATING_FINAL
[2026-03-04 05:19:17] 2026-03-04 04:18:27,873 | INFO     | update_server=False
[2026-03-04 05:19:17] 2026-03-04 04:18:27,873 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-04 05:19:17] 2026-03-04 04:18:27,874 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-04 05:19:17] 2026-03-04 04:18:27,874 | INFO     | aborting loop
[2026-03-04 05:19:17] 2026-03-04 04:18:28,216 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-04 05:19:17] 2026-03-04 04:18:28,544 | INFO     | all data control threads have been joined
[2026-03-04 05:19:17] 2026-03-04 04:18:28,835 | INFO     | all payload control threads have been joined
[2026-03-04 05:19:17] 2026-03-04 04:18:28,879 | INFO     | [job] retrieve thread has finished
[2026-03-04 05:19:17] 2026-03-04 04:18:28,880 | INFO     | [job] job monitor thread has finished
[2026-03-04 05:19:17] 2026-03-04 04:18:28,935 | INFO     | all job control threads have been joined
[2026-03-04 05:19:17] 2026-03-04 04:18:28,942 | INFO     | [payload] execute_payloads thread has finished
[2026-03-04 05:19:17] 2026-03-04 04:18:28,991 | INFO     | [job] validate thread has finished
[2026-03-04 05:19:17] 2026-03-04 04:18:29,278 | INFO     | [job] create_data_payload thread has finished
[2026-03-04 05:19:17] 2026-03-04 04:18:29,359 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-04 05:19:17] 2026-03-04 04:18:29,413 | INFO     | [payload] validate_pre thread has finished
[2026-03-04 05:19:17] 2026-03-04 04:18:29,528 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-04 05:19:17] 2026-03-04 04:18:29,531 | INFO     | [payload] validate_post thread has finished
[2026-03-04 05:19:17] 2026-03-04 04:18:29,548 | INFO     | [data] control thread has finished
[2026-03-04 05:19:17] 2026-03-04 04:18:29,620 | INFO     | [payload] failed_post thread has finished
[2026-03-04 05:19:17] 2026-03-04 04:18:29,683 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-04 05:19:17] 2026-03-04 04:18:29,841 | INFO     | [payload] control thread has finished
[2026-03-04 05:19:17] 2026-03-04 04:18:29,846 | INFO     | [data] copytool_in thread has finished
[2026-03-04 05:19:17] 2026-03-04 04:18:29,941 | INFO     | [job] control thread has finished
[2026-03-04 05:19:17] 2026-03-04 04:18:30,688 | INFO     | [job] queue monitor thread has finished
[2026-03-04 05:19:17] 2026-03-04 04:18:31,365 | INFO     | [data] copytool_out thread has finished
[2026-03-04 05:19:17] 2026-03-04 04:18:32,222 | INFO     | [data] queue_monitor thread has finished
[2026-03-04 05:19:17] 2026-03-04 04:18:56,794 | INFO     | PID=462041 has CPU usage=12.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-04 05:19:17] 2026-03-04 04:18:56,797 | INFO     | .. there are 19 such processes running
[2026-03-04 05:19:17] 2026-03-04 04:18:56,797 | INFO     | found 0 job(s) in 20 queues
[2026-03-04 05:19:17] 2026-03-04 04:18:56,797 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-04 05:19:17] 2026-03-04 04:18:56,797 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-04 05:19:17] 2026-03-04 04:19:10,306 | INFO     | [monitor] cgroup control has ended
[2026-03-04 05:19:17] 2026-03-04 04:19:11,944 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22921105868608)>', '<ExcThread(monitor, started 22920861845248)>']
[2026-03-04 05:19:17] 2026-03-04 04:19:12,873 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-04 05:19:17] 2026-03-04 04:19:12,875 | INFO     | [monitor] control thread has ended
[2026-03-04 05:19:17] 2026-03-04 04:19:16,969 | INFO     | all workflow threads have been joined
[2026-03-04 05:19:17] 2026-03-04 04:19:16,970 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-04 05:19:17] 2026-03-04 04:19:16,970 | INFO     | traces error code: 0
[2026-03-04 05:19:17] 2026-03-04 04:19:16,970 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-04 05:19:17] 2026-03-04 04:19:17,146 [wrapper] ==== pilot stdout END ====
[2026-03-04 05:19:17] 2026-03-04 04:19:17,150 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-04 05:19:17] 2026-03-04 04:19:17,153 [wrapper] pilotpid: 462041
[2026-03-04 05:19:17] 2026-03-04 04:19:17,157 [wrapper] Pilot exit status: 0
[2026-03-04 05:19:17] 2026-03-04 04:19:17,173 [wrapper] pandaids: 7036277652
[2026-03-04 05:19:17] 2026-03-04 04:19:17,327 [wrapper] cleanup supervisor_pilot  593682 462042
[2026-03-04 05:19:17] 2026-03-04 04:19:17,333 [wrapper] Test setup, not cleaning
[2026-03-04 05:19:17] 2026-03-04 04:19:17,337 [wrapper] apfmon messages muted
[2026-03-04 05:19:17] 2026-03-04 04:19:17,340 [wrapper] ==== wrapper stdout END ====
[2026-03-04 05:19:17] 2026-03-04 04:19:17,344 [wrapper] ==== wrapper stderr END ====
[2026-03-04 05:19:17]  *** Error codes and diagnostics ***
[2026-03-04 05:19:17]     "exeErrorCode": 0,
[2026-03-04 05:19:17]     "exeErrorDiag": "",
[2026-03-04 05:19:17]     "pilotErrorCode": 0,
[2026-03-04 05:19:17]     "pilotErrorDiag": "",
[2026-03-04 05:19:17]  *** Listing of results directory ***
[2026-03-04 05:19:17] total 342892
[2026-03-04 05:19:17] -rwx------ 1 boinc boinc     36322 Mar  3 12:44 runpilot2-wrapper.sh
[2026-03-04 05:19:17] -rw-r--r-- 1 boinc boinc      5111 Mar  3 12:44 queuedata.json
[2026-03-04 05:19:17] -rw-r--r-- 1 boinc boinc    584627 Mar  3 12:44 pilot3.tar.gz
[2026-03-04 05:19:17] -rw-r--r-- 1 boinc boinc       100 Mar  4 03:29 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-04 05:19:17] -rwxr-xr-x 1 boinc boinc      7986 Mar  4 03:29 run_atlas
[2026-03-04 05:19:17] -rw-r--r-- 1 boinc boinc       105 Mar  4 03:29 job.xml
[2026-03-04 05:19:17] -rw-r--r-- 1 boinc boinc      6697 Mar  4 03:29 init_data.xml
[2026-03-04 05:19:17] -rw-r--r-- 2 boinc boinc 192421443 Mar  4 03:29 EVNT.48700944._000116.pool.root.1
[2026-03-04 05:19:17] -rw-r--r-- 2 boinc boinc     15845 Mar  4 03:29 start_atlas.sh
[2026-03-04 05:19:17] drwxrwx--x 2 boinc boinc      4096 Mar  4 03:29 shared
[2026-03-04 05:19:17] -rw-r--r-- 2 boinc boinc    597928 Mar  4 03:29 input.tar.gz
[2026-03-04 05:19:17] -rw-r--r-- 1 boinc boinc         0 Mar  4 03:29 boinc_lockfile
[2026-03-04 05:19:17] -rw-r--r-- 1 boinc boinc      2500 Mar  4 03:29 pandaJob.out
[2026-03-04 05:19:17] -rw------- 1 boinc boinc    998484 Mar  4 03:29 agis_schedconf.cvmfs.json
[2026-03-04 05:19:17] -rw------- 1 boinc boinc   1516092 Mar  4 03:29 agis_ddmendpoints.agis.ALL.json
[2026-03-04 05:19:17] -rw------- 1 boinc boinc       442 Mar  4 03:29 workernode_map.json
[2026-03-04 05:19:17] drwx------ 5 boinc boinc      4096 Mar  4 03:30 pilot3
[2026-03-04 05:19:17] -rw------- 1 boinc boinc 152341950 Mar  4 05:17 HITS.48700946._003257.pool.root.1
[2026-03-04 05:19:17] -rw------- 1 boinc boinc      1026 Mar  4 05:18 memory_monitor_summary.json
[2026-03-04 05:19:17] -rw------- 1 boinc boinc    287715 Mar  4 05:18 log.48700946._003257.job.log.tgz.1
[2026-03-04 05:19:17] -rw------- 1 boinc boinc        95 Mar  4 05:18 pilot_heartbeat.json
[2026-03-04 05:19:17] -rw-r--r-- 1 boinc boinc       530 Mar  4 05:18 boinc_task_state.xml
[2026-03-04 05:19:17] -rw------- 1 boinc boinc      6347 Mar  4 05:18 heartbeat.json
[2026-03-04 05:19:17] -rw-r--r-- 1 boinc boinc      8192 Mar  4 05:18 boinc_mmap_file
[2026-03-04 05:19:17] -rw-r--r-- 1 boinc boinc        27 Mar  4 05:18 wrapper_checkpoint.txt
[2026-03-04 05:19:17] -rw------- 1 boinc boinc      4831 Mar  4 05:19 pilotlog.txt
[2026-03-04 05:19:17] -rw------- 1 boinc boinc    928596 Mar  4 05:19 log.48700946._003257.job.log.1
[2026-03-04 05:19:17] -rw------- 1 boinc boinc       357 Mar  4 05:19 output.list
[2026-03-04 05:19:17] -rw-r--r-- 1 boinc boinc       620 Mar  4 05:19 runtime_log
[2026-03-04 05:19:17] -rw------- 1 boinc boinc   1228800 Mar  4 05:19 result.tar.gz
[2026-03-04 05:19:17] -rw-r--r-- 1 boinc boinc      9204 Mar  4 05:19 runtime_log.err
[2026-03-04 05:19:17] -rw------- 1 boinc boinc       662 Mar  4 05:19 MSoKDmxLdH9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmZQGLDmcJIg0m.diag
[2026-03-04 05:19:17] -rw-r--r-- 1 boinc boinc     20841 Mar  4 05:19 stderr.txt
[2026-03-04 05:19:17] HITS file was successfully produced:
[2026-03-04 05:19:17] -rw------- 1 boinc boinc 152341950 Mar  4 05:17 shared/HITS.pool.root.1
[2026-03-04 05:19:17]  *** Contents of shared directory: ***
[2026-03-04 05:19:17] total 338492
[2026-03-04 05:19:17] -rw-r--r-- 2 boinc boinc 192421443 Mar  4 03:29 ATLAS.root_0
[2026-03-04 05:19:17] -rw-r--r-- 2 boinc boinc     15845 Mar  4 03:29 start_atlas.sh
[2026-03-04 05:19:17] -rw-r--r-- 2 boinc boinc    597928 Mar  4 03:29 input.tar.gz
[2026-03-04 05:19:17] -rw------- 1 boinc boinc 152341950 Mar  4 05:17 HITS.pool.root.1
[2026-03-04 05:19:17] -rw------- 1 boinc boinc   1228800 Mar  4 05:19 result.tar.gz
05:19:19 (457896): run_atlas exited; CPU time 24803.478520
05:19:19 (457896): called boinc_finish(0)

</stderr_txt>
]]>

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