Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
16:57:02 (1294374): wrapper (7.7.26015): starting
16:57:02 (1294374): wrapper: running run_atlas (--nthreads 4)
[2026-03-04 16:57:02] Arguments: --nthreads 4
[2026-03-04 16:57:02] Threads: 4
[2026-03-04 16:57:02] Checking for CVMFS
[2026-03-04 16:57:03] No cvmfs_config command found, will try listing directly
[2026-03-04 16:57:03] CVMFS is ok
[2026-03-04 16:57:03] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-04 16:57:03] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-04 16:57:03] Further information can be found at the LHC@home message board.
[2026-03-04 16:57:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-04 16:57:03] Checking for apptainer binary...
[2026-03-04 16:57:03] which: no apptainer in ((null))
[2026-03-04 16:57:03] apptainer is not installed, using version from CVMFS
[2026-03-04 16:57:03] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-04 16:57:03] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot180/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut21.grid.cesnet.cz
[2026-03-04 16:57:03] apptainer works
[2026-03-04 16:57:03] Set ATHENA_PROC_NUMBER=4
[2026-03-04 16:57:03] Set ATHENA_CORE_NUMBER=4
[2026-03-04 16:57:03] Starting ATLAS job with PandaID=7036205054
[2026-03-04 16:57:03] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot180/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-04 19:09:14]  *** The last 200 lines of the pilot log: ***
[2026-03-04 19:09:14] 2026-03-04 18:08:14,957 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_499655/.job.ad'
[2026-03-04 19:09:14] 2026-03-04 18:08:14,957 | INFO     | total number of processed events: 400 (read)
[2026-03-04 19:09:14] 2026-03-04 18:08:15,053 | INFO     | using path: /var/lib/boinc/var/slot180/slots/0/PanDA_Pilot-7036205054/memory_monitor_summary.json (trf name=prmon)
[2026-03-04 19:09:14] 2026-03-04 18:08:15,054 | INFO     | extracted standard info from prmon json
[2026-03-04 19:09:14] 2026-03-04 18:08:15,054 | INFO     | extracted standard memory fields from prmon json
[2026-03-04 19:09:14] 2026-03-04 18:08:15,054 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-04 19:09:14] 2026-03-04 18:08:15,054 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-04 19:09:14] 2026-03-04 18:08:15,054 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-04 19:09:14] 2026-03-04 18:08:15,056 | INFO     | fitting pss+swap vs Time
[2026-03-04 19:09:14] 2026-03-04 18:08:15,056 | INFO     | sum of square deviations: 650252192.0
[2026-03-04 19:09:14] 2026-03-04 18:08:15,056 | INFO     | sum of deviations: 6395741816.5
[2026-03-04 19:09:14] 2026-03-04 18:08:15,056 | INFO     | mean x: 1772643802.5
[2026-03-04 19:09:14] 2026-03-04 18:08:15,056 | INFO     | mean y: 2298266.8359375
[2026-03-04 19:09:14] 2026-03-04 18:08:15,056 | INFO     | intersect: -17433047946.35886
[2026-03-04 19:09:14] 2026-03-04 18:08:15,065 | INFO     | chi2: 1.7960702336904535
[2026-03-04 19:09:14] 2026-03-04 18:08:15,066 | INFO     | sum of square deviations: 576985702.0
[2026-03-04 19:09:14] 2026-03-04 18:08:15,066 | INFO     | sum of deviations: 13490629582.0
[2026-03-04 19:09:14] 2026-03-04 18:08:15,066 | INFO     | mean x: 1772643650.0
[2026-03-04 19:09:14] 2026-03-04 18:08:15,066 | INFO     | mean y: 2312537.4065040653
[2026-03-04 19:09:14] 2026-03-04 18:08:15,066 | INFO     | intersect: -41444258461.04513
[2026-03-04 19:09:14] 2026-03-04 18:08:15,066 | INFO     | chi2: 1.083864085037218
[2026-03-04 19:09:14] 2026-03-04 18:08:15,066 | INFO     | current chi2=1.083864085037218 (change=39.6535800935712 %)
[2026-03-04 19:09:14] 2026-03-04 18:08:15,066 | INFO     | sum of square deviations: 509440249.5
[2026-03-04 19:09:14] 2026-03-04 18:08:15,067 | INFO     | sum of deviations: 12920500798.499998
[2026-03-04 19:09:14] 2026-03-04 18:08:15,067 | INFO     | mean x: 1772643497.5
[2026-03-04 19:09:14] 2026-03-04 18:08:15,067 | INFO     | mean y: 2311249.533898305
[2026-03-04 19:09:14] 2026-03-04 18:08:15,067 | INFO     | intersect: -44955741726.02821
[2026-03-04 19:09:14] 2026-03-04 18:08:15,067 | INFO     | chi2: 1.0848722604292258
[2026-03-04 19:09:14] 2026-03-04 18:08:15,067 | INFO     | current chi2=1.0848722604292258 (change=-0.093016772667865 %)
[2026-03-04 19:09:14] 2026-03-04 18:08:15,067 | INFO     | right removable region: 117
[2026-03-04 19:09:14] 2026-03-04 18:08:15,067 | INFO     | sum of square deviations: 576985702.0
[2026-03-04 19:09:14] 2026-03-04 18:08:15,067 | INFO     | sum of deviations: -5933221425.0
[2026-03-04 19:09:14] 2026-03-04 18:08:15,067 | INFO     | mean x: 1772643955.0
[2026-03-04 19:09:14] 2026-03-04 18:08:15,067 | INFO     | mean y: 2323298.18699187
[2026-03-04 19:09:14] 2026-03-04 18:08:15,067 | INFO     | intersect: 18230659037.26348
[2026-03-04 19:09:14] 2026-03-04 18:08:15,067 | INFO     | chi2: 0.7347584108397014
[2026-03-04 19:09:14] 2026-03-04 18:08:15,068 | INFO     | current chi2=0.7347584108397014 (change=59.0907751235337 %)
[2026-03-04 19:09:14] 2026-03-04 18:08:15,068 | INFO     | sum of square deviations: 509440249.5
[2026-03-04 19:09:14] 2026-03-04 18:08:15,068 | INFO     | sum of deviations: -6170080124.5
[2026-03-04 19:09:14] 2026-03-04 18:08:15,068 | INFO     | mean x: 1772644107.5
[2026-03-04 19:09:14] 2026-03-04 18:08:15,068 | INFO     | mean y: 2323820.6016949154
[2026-03-04 19:09:14] 2026-03-04 18:08:15,068 | INFO     | intersect: 21471683939.34471
[2026-03-04 19:09:14] 2026-03-04 18:08:15,068 | INFO     | chi2: 0.7346444391564536
[2026-03-04 19:09:14] 2026-03-04 18:08:15,068 | INFO     | current chi2=0.7346444391564536 (change=0.015511449963197062 %)
[2026-03-04 19:09:14] 2026-03-04 18:08:15,068 | INFO     | left removable region: 20
[2026-03-04 19:09:14] 2026-03-04 18:08:15,068 | INFO     | sum of square deviations: 282974608.0
[2026-03-04 19:09:14] 2026-03-04 18:08:15,068 | INFO     | sum of deviations: 454213015.00000006
[2026-03-04 19:09:14] 2026-03-04 18:08:15,069 | INFO     | mean x: 1772644077.0
[2026-03-04 19:09:14] 2026-03-04 18:08:15,069 | INFO     | mean y: 2341433.2680412373
[2026-03-04 19:09:14] 2026-03-04 18:08:15,069 | INFO     | intersect: -2842995172.820878
[2026-03-04 19:09:14] 2026-03-04 18:08:15,069 | INFO     | chi2: 0.0001724550806442121
[2026-03-04 19:09:14] 2026-03-04 18:08:15,069 | INFO     | current memory leak: 1.61 B/s (using 97 data points, chi2=0.00)
[2026-03-04 19:09:14] 2026-03-04 18:08:15,069 | INFO     | could have reported an average CPU frequency of 3569 MHz (8 samples)
[2026-03-04 19:09:14] 2026-03-04 18:08:15,069 | INFO     | ..............................
[2026-03-04 19:09:14] 2026-03-04 18:08:15,069 | INFO     | . Timing measurements:
[2026-03-04 19:09:14] 2026-03-04 18:08:15,069 | INFO     | . get job = 0 s
[2026-03-04 19:09:14] 2026-03-04 18:08:15,069 | INFO     | . initial setup = 18 s
[2026-03-04 19:09:14] 2026-03-04 18:08:15,069 | INFO     | . payload setup = 21 s
[2026-03-04 19:09:14] 2026-03-04 18:08:15,069 | INFO     | . stage-in = 0 s
[2026-03-04 19:09:14] 2026-03-04 18:08:15,069 | INFO     | . payload execution = 7775 s
[2026-03-04 19:09:14] 2026-03-04 18:08:15,069 | INFO     | . stage-out = 1 s
[2026-03-04 19:09:14] 2026-03-04 18:08:15,069 | INFO     | . log creation = 0 s
[2026-03-04 19:09:14] 2026-03-04 18:08:15,069 | INFO     | ..............................
[2026-03-04 19:09:14] 2026-03-04 18:08:15,157 | INFO     | 
[2026-03-04 19:09:14] 2026-03-04 18:08:15,158 | INFO     | job summary report
[2026-03-04 19:09:14] 2026-03-04 18:08:15,158 | INFO     | --------------------------------------------------
[2026-03-04 19:09:14] 2026-03-04 18:08:15,158 | INFO     | PanDA job id: 7036205054
[2026-03-04 19:09:14] 2026-03-04 18:08:15,158 | INFO     | task id: 48851223
[2026-03-04 19:09:14] 2026-03-04 18:08:15,158 | INFO     | errors: (none)
[2026-03-04 19:09:14] 2026-03-04 18:08:15,158 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-04 19:09:14] 2026-03-04 18:08:15,158 | INFO     | pilot state: finished 
[2026-03-04 19:09:14] 2026-03-04 18:08:15,158 | INFO     | transexitcode: 0
[2026-03-04 19:09:14] 2026-03-04 18:08:15,158 | INFO     | exeerrorcode: 0
[2026-03-04 19:09:14] 2026-03-04 18:08:15,158 | INFO     | exeerrordiag: 
[2026-03-04 19:09:14] 2026-03-04 18:08:15,158 | INFO     | exitcode: 0
[2026-03-04 19:09:14] 2026-03-04 18:08:15,158 | INFO     | exitmsg: OK
[2026-03-04 19:09:14] 2026-03-04 18:08:15,158 | INFO     | cpuconsumptiontime: 24502 s
[2026-03-04 19:09:14] 2026-03-04 18:08:15,158 | INFO     | nevents: 400
[2026-03-04 19:09:14] 2026-03-04 18:08:15,158 | INFO     | neventsw: 0
[2026-03-04 19:09:14] 2026-03-04 18:08:15,158 | INFO     | pid: 1312443
[2026-03-04 19:09:14] 2026-03-04 18:08:15,158 | INFO     | pgrp: 1312443
[2026-03-04 19:09:14] 2026-03-04 18:08:15,158 | INFO     | corecount: 4
[2026-03-04 19:09:14] 2026-03-04 18:08:15,158 | INFO     | event service: False
[2026-03-04 19:09:14] 2026-03-04 18:08:15,158 | INFO     | sizes: {0: 2287154, 11: 2287154, 7800: 2314978, 7803: 2324000, 7805: 2324056, 7808: 2324250}
[2026-03-04 19:09:14] 2026-03-04 18:08:15,158 | INFO     | --------------------------------------------------
[2026-03-04 19:09:14] 2026-03-04 18:08:15,158 | INFO     | 
[2026-03-04 19:09:14] 2026-03-04 18:08:15,158 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot180/slots/0
[2026-03-04 19:09:14] 2026-03-04 18:08:15,354 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-04 19:09:14] 2026-03-04 18:08:15,354 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-04 19:09:14] 2026-03-04 18:08:15,354 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-04 19:09:14] 2026-03-04 18:08:15,354 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-04 19:09:14] 2026-03-04 18:08:15,354 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-04 19:09:14] 2026-03-04 18:08:15,354 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-04 19:09:14] 2026-03-04 18:08:15,354 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-04 19:09:14] 2026-03-04 18:08:15,354 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-04 19:09:14] 2026-03-04 18:08:15,354 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-04 19:09:14] 2026-03-04 18:08:15,354 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-04 19:09:14] 2026-03-04 18:08:15,354 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-04 19:09:14] 2026-03-04 18:08:15,354 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-04 19:09:14] 2026-03-04 18:08:15,354 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-04 19:09:14] 2026-03-04 18:08:15,354 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-04 19:09:14] 2026-03-04 18:08:15,355 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-04 19:09:14] 2026-03-04 18:08:15,355 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-04 19:09:14] 2026-03-04 18:08:15,355 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-04 19:09:14] 2026-03-04 18:08:15,355 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-04 19:09:14] 2026-03-04 18:08:15,355 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-04 19:09:14] 2026-03-04 18:08:15,355 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-04 19:09:14] 2026-03-04 18:08:15,355 | INFO     | job 7036205054 has completed (purged errors)
[2026-03-04 19:09:14] 2026-03-04 18:08:15,355 | INFO     | overall cleanup function is called
[2026-03-04 19:09:14] 2026-03-04 18:08:16,356 | INFO     | PID=1300482 has CPU usage=14.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-03-04 19:09:14] 2026-03-04 18:08:16,356 | INFO     | .. there are 54 such processes running
[2026-03-04 19:09:14] 2026-03-04 18:08:16,362 | INFO     | --- collectZombieJob: --- 10, [1312443]
[2026-03-04 19:09:14] 2026-03-04 18:08:16,363 | INFO     | zombie collector waiting for pid 1312443
[2026-03-04 19:09:14] 2026-03-04 18:08:16,363 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-04 19:09:14] 2026-03-04 18:08:16,363 | INFO     | collected zombie processes
[2026-03-04 19:09:14] 2026-03-04 18:08:16,363 | INFO     | will attempt to kill all subprocesses of pid=1312443
[2026-03-04 19:09:14] 2026-03-04 18:08:17,156 | INFO     | process IDs to be killed: [1312443] (in reverse order)
[2026-03-04 19:09:14] 2026-03-04 18:08:18,955 | WARNING  | found no corresponding commands to process id(s)
[2026-03-04 19:09:14] 2026-03-04 18:08:18,955 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-04 19:09:14] 2026-03-04 18:08:19,043 | INFO     | did not find any defunct processes belonging to 1312443
[2026-03-04 19:09:14] 2026-03-04 18:08:19,107 | INFO     | did not find any defunct processes belonging to 1312443
[2026-03-04 19:09:14] 2026-03-04 18:08:19,108 | INFO     | ready for new job
[2026-03-04 19:09:14] 2026-03-04 18:08:19,108 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-04 19:09:14] 2026-03-04 18:08:19,109 | INFO     | **************************************
[2026-03-04 19:09:14] 2026-03-04 18:08:19,109 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-04 19:09:14] 2026-03-04 18:08:19,109 | INFO     | **************************************
[2026-03-04 19:09:14] 2026-03-04 18:08:19,109 | INFO     | 
[2026-03-04 19:09:14] 2026-03-04 18:08:19,120 | INFO     | architecture information:
[2026-03-04 19:09:14] 2026-03-04 18:08:19,120 | INFO     | executing command: cat /etc/os-release
[2026-03-04 19:09:14] 2026-03-04 18:08:19,176 | INFO     | cat /etc/os-release:
[2026-03-04 19:09:14] NAME="CentOS Linux"
[2026-03-04 19:09:14] VERSION="7 (Core)"
[2026-03-04 19:09:14] ID="centos"
[2026-03-04 19:09:14] ID_LIKE="rhel fedora"
[2026-03-04 19:09:14] VERSION_ID="7"
[2026-03-04 19:09:14] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-04 19:09:14] ANSI_COLOR="0;31"
[2026-03-04 19:09:14] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-04 19:09:14] HOME_URL="https://www.centos.org/"
[2026-03-04 19:09:14] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-04 19:09:14] 
[2026-03-04 19:09:14] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-04 19:09:14] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-04 19:09:14] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-04 19:09:14] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-04 19:09:14] 
[2026-03-04 19:09:14] 2026-03-04 18:08:19,176 | INFO     | **************************************
[2026-03-04 19:09:14] 2026-03-04 18:08:19,679 | INFO     | executing command: df -mP /var/lib/boinc/var/slot180/slots/0
[2026-03-04 19:09:14] 2026-03-04 18:08:19,759 | INFO     | sufficient remaining disk space (20788019200 B)
[2026-03-04 19:09:14] 2026-03-04 18:08:19,759 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-04 19:09:14] 2026-03-04 18:08:19,759 | INFO     | current server update state: UPDATING_FINAL
[2026-03-04 19:09:14] 2026-03-04 18:08:19,759 | INFO     | update_server=False
[2026-03-04 19:09:14] 2026-03-04 18:08:19,759 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-04 19:09:14] 2026-03-04 18:08:19,760 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-04 19:09:14] 2026-03-04 18:08:19,760 | INFO     | aborting loop
[2026-03-04 19:09:14] 2026-03-04 18:08:19,770 | INFO     | all payload control threads have been joined
[2026-03-04 19:09:14] 2026-03-04 18:08:20,173 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-04 19:09:14] 2026-03-04 18:08:20,596 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-04 19:09:14] 2026-03-04 18:08:20,735 | INFO     | all data control threads have been joined
[2026-03-04 19:09:14] 2026-03-04 18:08:20,765 | INFO     | [job] retrieve thread has finished
[2026-03-04 19:09:14] 2026-03-04 18:08:20,766 | INFO     | [job] job monitor thread has finished
[2026-03-04 19:09:14] 2026-03-04 18:08:20,777 | INFO     | [payload] control thread has finished
[2026-03-04 19:09:14] 2026-03-04 18:08:20,825 | INFO     | [job] create_data_payload thread has finished
[2026-03-04 19:09:14] 2026-03-04 18:08:20,835 | INFO     | all job control threads have been joined
[2026-03-04 19:09:14] 2026-03-04 18:08:21,180 | INFO     | [job] queue monitor thread has finished
[2026-03-04 19:09:14] 2026-03-04 18:08:21,342 | INFO     | [job] validate thread has finished
[2026-03-04 19:09:14] 2026-03-04 18:08:21,468 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-04 19:09:14] 2026-03-04 18:08:21,532 | INFO     | [payload] validate_post thread has finished
[2026-03-04 19:09:14] 2026-03-04 18:08:21,721 | INFO     | [payload] validate_pre thread has finished
[2026-03-04 19:09:14] 2026-03-04 18:08:21,742 | INFO     | [data] control thread has finished
[2026-03-04 19:09:14] 2026-03-04 18:08:21,842 | INFO     | [job] control thread has finished
[2026-03-04 19:09:14] 2026-03-04 18:08:22,049 | INFO     | [data] copytool_in thread has finished
[2026-03-04 19:09:14] 2026-03-04 18:08:22,112 | INFO     | [payload] execute_payloads thread has finished
[2026-03-04 19:09:14] 2026-03-04 18:08:22,215 | INFO     | [payload] failed_post thread has finished
[2026-03-04 19:09:14] 2026-03-04 18:08:22,604 | INFO     | [data] copytool_out thread has finished
[2026-03-04 19:09:14] 2026-03-04 18:08:23,195 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-04 19:09:14] 2026-03-04 18:08:27,204 | INFO     | [data] queue_monitor thread has finished
[2026-03-04 19:09:14] 2026-03-04 18:08:49,338 | INFO     | PID=1300482 has CPU usage=3.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-04 19:09:14] 2026-03-04 18:08:49,338 | INFO     | .. there are 54 such processes running
[2026-03-04 19:09:14] 2026-03-04 18:08:49,338 | INFO     | found 0 job(s) in 20 queues
[2026-03-04 19:09:14] 2026-03-04 18:08:49,339 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-04 19:09:14] 2026-03-04 18:08:49,339 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-04 19:09:14] 2026-03-04 18:09:08,708 | INFO     | [monitor] cgroup control has ended
[2026-03-04 19:09:14] 2026-03-04 18:09:08,858 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23164744320832)>', '<ExcThread(monitor, started 23164506879744)>']
[2026-03-04 19:09:14] 2026-03-04 18:09:09,460 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-04 19:09:14] 2026-03-04 18:09:09,461 | INFO     | [monitor] control thread has ended
[2026-03-04 19:09:14] 2026-03-04 18:09:13,884 | INFO     | all workflow threads have been joined
[2026-03-04 19:09:14] 2026-03-04 18:09:13,884 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-04 19:09:14] 2026-03-04 18:09:13,884 | INFO     | traces error code: 0
[2026-03-04 19:09:14] 2026-03-04 18:09:13,884 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-04 19:09:14] 2026-03-04 18:09:14,183 [wrapper] ==== pilot stdout END ====
[2026-03-04 19:09:14] 2026-03-04 18:09:14,192 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-04 19:09:14] 2026-03-04 18:09:14,212 [wrapper] pilotpid: 1300482
[2026-03-04 19:09:14] 2026-03-04 18:09:14,222 [wrapper] Pilot exit status: 0
[2026-03-04 19:09:14] 2026-03-04 18:09:14,317 [wrapper] pandaids: 7036205054
[2026-03-04 19:09:14] 2026-03-04 18:09:14,648 [wrapper] cleanup supervisor_pilot 2159485 1300483
[2026-03-04 19:09:14] 2026-03-04 18:09:14,654 [wrapper] Test setup, not cleaning
[2026-03-04 19:09:14] 2026-03-04 18:09:14,661 [wrapper] apfmon messages muted
[2026-03-04 19:09:14] 2026-03-04 18:09:14,664 [wrapper] ==== wrapper stdout END ====
[2026-03-04 19:09:14] 2026-03-04 18:09:14,699 [wrapper] ==== wrapper stderr END ====
[2026-03-04 19:09:14]  *** Error codes and diagnostics ***
[2026-03-04 19:09:14]     "exeErrorCode": 0,
[2026-03-04 19:09:14]     "exeErrorDiag": "",
[2026-03-04 19:09:14]     "pilotErrorCode": 0,
[2026-03-04 19:09:14]     "pilotErrorDiag": "",
[2026-03-04 19:09:14]  *** Listing of results directory ***
[2026-03-04 19:09:14] total 454300
[2026-03-04 19:09:14] -rw-r--r--. 1 boinc boinc    584627 Mar  3 05:44 pilot3.tar.gz
[2026-03-04 19:09:14] -rw-r--r--. 1 boinc boinc      5111 Mar  3 06:00 queuedata.json
[2026-03-04 19:09:14] -rwx------. 1 boinc boinc     36322 Mar  3 06:01 runpilot2-wrapper.sh
[2026-03-04 19:09:14] -rw-r--r--. 1 boinc boinc       100 Mar  4 16:56 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-04 19:09:14] -rwxr-xr-x. 1 boinc boinc      7986 Mar  4 16:56 run_atlas
[2026-03-04 19:09:14] -rw-r--r--. 1 boinc boinc       105 Mar  4 16:56 job.xml
[2026-03-04 19:09:14] -rw-r--r--. 2 boinc boinc 252335028 Mar  4 16:57 EVNT.48459837._000003.pool.root.1
[2026-03-04 19:09:14] -rw-r--r--. 1 boinc boinc      6708 Mar  4 16:57 init_data.xml
[2026-03-04 19:09:14] -rw-r--r--. 2 boinc boinc     15845 Mar  4 16:57 start_atlas.sh
[2026-03-04 19:09:14] drwxrwx--x. 2 boinc boinc      4096 Mar  4 16:57 shared
[2026-03-04 19:09:14] -rw-r--r--. 2 boinc boinc    597966 Mar  4 16:57 input.tar.gz
[2026-03-04 19:09:14] -rw-r--r--. 1 boinc boinc         0 Mar  4 16:57 boinc_lockfile
[2026-03-04 19:09:14] -rw-r--r--. 1 boinc boinc      2613 Mar  4 16:57 pandaJob.out
[2026-03-04 19:09:14] -rw-------. 1 boinc boinc    997352 Mar  4 16:57 agis_schedconf.cvmfs.json
[2026-03-04 19:09:14] -rw-------. 1 boinc boinc   1516092 Mar  4 16:57 agis_ddmendpoints.agis.ALL.json
[2026-03-04 19:09:14] -rw-------. 1 boinc boinc       444 Mar  4 16:57 workernode_map.json
[2026-03-04 19:09:14] drwx------. 5 boinc boinc      4096 Mar  4 16:57 pilot3
[2026-03-04 19:09:14] -rw-------. 1 boinc boinc 206117164 Mar  4 19:07 HITS.48851223._000067.pool.root.1
[2026-03-04 19:09:14] -rw-r--r--. 1 boinc boinc       530 Mar  4 19:07 boinc_task_state.xml
[2026-03-04 19:09:14] -rw-------. 1 boinc boinc      1032 Mar  4 19:08 memory_monitor_summary.json
[2026-03-04 19:09:14] -rw-------. 1 boinc boinc    315158 Mar  4 19:08 log.48851223._000067.job.log.tgz.1
[2026-03-04 19:09:14] -rw-------. 1 boinc boinc      6345 Mar  4 19:08 heartbeat.json
[2026-03-04 19:09:14] -rw-------. 1 boinc boinc        95 Mar  4 19:08 pilot_heartbeat.json
[2026-03-04 19:09:14] -rw-r--r--. 1 boinc boinc      8192 Mar  4 19:09 boinc_mmap_file
[2026-03-04 19:09:14] -rw-r--r--. 1 boinc boinc        27 Mar  4 19:09 wrapper_checkpoint.txt
[2026-03-04 19:09:14] -rw-------. 1 boinc boinc      4830 Mar  4 19:09 pilotlog.txt
[2026-03-04 19:09:14] -rw-------. 1 boinc boinc   1095504 Mar  4 19:09 log.48851223._000067.job.log.1
[2026-03-04 19:09:14] -rw-------. 1 boinc boinc       357 Mar  4 19:09 output.list
[2026-03-04 19:09:14] -rw-r--r--. 1 boinc boinc       620 Mar  4 19:09 runtime_log
[2026-03-04 19:09:14] -rw-------. 1 boinc boinc   1423360 Mar  4 19:09 result.tar.gz
[2026-03-04 19:09:14] -rw-------. 1 boinc boinc       662 Mar  4 19:09 wBBMDmS4WH9n9Rq4apOajLDm4fhM0noT9bVooX4SDmBkDLDmrGTNkn.diag
[2026-03-04 19:09:14] -rw-r--r--. 1 boinc boinc      9221 Mar  4 19:09 runtime_log.err
[2026-03-04 19:09:14] -rw-r--r--. 1 boinc boinc     20970 Mar  4 19:09 stderr.txt
[2026-03-04 19:09:15] HITS file was successfully produced:
[2026-03-04 19:09:15] -rw-------. 1 boinc boinc 206117164 Mar  4 19:07 shared/HITS.pool.root.1
[2026-03-04 19:09:15]  *** Contents of shared directory: ***
[2026-03-04 19:09:15] total 449712
[2026-03-04 19:09:15] -rw-r--r--. 2 boinc boinc 252335028 Mar  4 16:57 ATLAS.root_0
[2026-03-04 19:09:15] -rw-r--r--. 2 boinc boinc     15845 Mar  4 16:57 start_atlas.sh
[2026-03-04 19:09:15] -rw-r--r--. 2 boinc boinc    597966 Mar  4 16:57 input.tar.gz
[2026-03-04 19:09:15] -rw-------. 1 boinc boinc 206117164 Mar  4 19:07 HITS.pool.root.1
[2026-03-04 19:09:15] -rw-------. 1 boinc boinc   1423360 Mar  4 19:09 result.tar.gz
19:09:16 (1294374): run_atlas exited; CPU time 24838.860012
19:09:16 (1294374): called boinc_finish(0)

</stderr_txt>
]]>

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