Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
23:57:08 (1365525): wrapper (7.7.26015): starting
23:57:08 (1365525): wrapper: running run_atlas (--nthreads 3)
[2026-03-03 23:57:08] Arguments: --nthreads 3
[2026-03-03 23:57:08] Threads: 3
[2026-03-03 23:57:08] Checking for CVMFS
[2026-03-03 23:57:08] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-03 23:57:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-03 23:57:09] Running cvmfs_config stat atlas.cern.ch
[2026-03-03 23:57:09] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-03 23:57:09] 2.9.2.0 310932 9193 67932 156859 3 50 29695173 36864000 0 130560 0 2926146 99.978 345124 13882 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-03 23:57:09] CVMFS is ok
[2026-03-03 23:57:09] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-03 23:57:09] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-03 23:57:09] Further information can be found at the LHC@home message board.
[2026-03-03 23:57:09] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-03 23:57:09] Checking for apptainer binary...
[2026-03-03 23:57:09] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-03 23:57:09] Running /usr/bin/apptainer --version
[2026-03-03 23:57:09] apptainer version 1.4.1-1.1
[2026-03-03 23:57:09] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-03 23:57:09] atlasA223a
[2026-03-03 23:57:09] apptainer works
[2026-03-03 23:57:09] Set ATHENA_PROC_NUMBER=3
[2026-03-03 23:57:09] Set ATHENA_CORE_NUMBER=3
[2026-03-03 23:57:09] Starting ATLAS job with PandaID=7036191646
[2026-03-03 23:57:09] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-04 03:28:46]  *** The last 200 lines of the pilot log: ***
[2026-03-04 03:28:46] 2026-03-04 02:27:45,678 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-04 03:28:46] 2026-03-04 02:27:45,678 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-04 03:28:46] 2026-03-04 02:27:45,678 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-04 03:28:46] 2026-03-04 02:27:45,678 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-04 03:28:46] 2026-03-04 02:27:45,678 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-04 03:28:46] 2026-03-04 02:27:45,678 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-04 03:28:46] 2026-03-04 02:27:45,678 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-04 03:28:46] 2026-03-04 02:27:45,679 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-04 03:28:46] 2026-03-04 02:27:45,679 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-04 03:28:46] 2026-03-04 02:27:45,679 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-04 03:28:46] 2026-03-04 02:27:45,679 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-04 03:28:46] 2026-03-04 02:27:45,679 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-04 03:28:46] 2026-03-04 02:27:45,679 | INFO     | job 7036191646 has completed (purged errors)
[2026-03-04 03:28:46] 2026-03-04 02:27:45,679 | INFO     | overall cleanup function is called
[2026-03-04 03:28:46] 2026-03-04 02:27:46,685 | INFO     | --- collectZombieJob: --- 10, [1373996]
[2026-03-04 03:28:46] 2026-03-04 02:27:46,685 | INFO     | zombie collector waiting for pid 1373996
[2026-03-04 03:28:46] 2026-03-04 02:27:46,686 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-04 03:28:46] 2026-03-04 02:27:46,686 | INFO     | collected zombie processes
[2026-03-04 03:28:46] 2026-03-04 02:27:46,686 | INFO     | will attempt to kill all subprocesses of pid=1373996
[2026-03-04 03:28:46] 2026-03-04 02:27:46,723 | INFO     | process IDs to be killed: [1373996] (in reverse order)
[2026-03-04 03:28:46] 2026-03-04 02:27:46,749 | WARNING  | found no corresponding commands to process id(s)
[2026-03-04 03:28:46] 2026-03-04 02:27:46,750 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-04 03:28:46] 2026-03-04 02:27:46,755 | INFO     | did not find any defunct processes belonging to 1373996
[2026-03-04 03:28:46] 2026-03-04 02:27:46,759 | INFO     | did not find any defunct processes belonging to 1373996
[2026-03-04 03:28:46] 2026-03-04 02:27:46,759 | INFO     | ready for new job
[2026-03-04 03:28:46] 2026-03-04 02:27:46,759 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-04 03:28:46] 2026-03-04 02:27:46,763 | INFO     | **************************************
[2026-03-04 03:28:46] 2026-03-04 02:27:46,763 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-04 03:28:46] 2026-03-04 02:27:46,763 | INFO     | **************************************
[2026-03-04 03:28:46] 2026-03-04 02:27:46,763 | INFO     | 
[2026-03-04 03:28:46] 2026-03-04 02:27:46,765 | INFO     | architecture information:
[2026-03-04 03:28:46] 2026-03-04 02:27:46,765 | INFO     | executing command: cat /etc/os-release
[2026-03-04 03:28:46] 2026-03-04 02:27:46,791 | INFO     | cat /etc/os-release:
[2026-03-04 03:28:46] NAME="CentOS Linux"
[2026-03-04 03:28:46] VERSION="7 (Core)"
[2026-03-04 03:28:46] ID="centos"
[2026-03-04 03:28:46] ID_LIKE="rhel fedora"
[2026-03-04 03:28:46] VERSION_ID="7"
[2026-03-04 03:28:46] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-04 03:28:46] ANSI_COLOR="0;31"
[2026-03-04 03:28:46] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-04 03:28:46] HOME_URL="https://www.centos.org/"
[2026-03-04 03:28:46] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-04 03:28:46] 
[2026-03-04 03:28:46] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-04 03:28:46] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-04 03:28:46] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-04 03:28:46] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-04 03:28:46] 
[2026-03-04 03:28:46] 2026-03-04 02:27:46,792 | INFO     | **************************************
[2026-03-04 03:28:46] 2026-03-04 02:27:47,295 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-04 03:28:46] 2026-03-04 02:27:47,309 | INFO     | sufficient remaining disk space (329841115136 B)
[2026-03-04 03:28:46] 2026-03-04 02:27:47,309 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-04 03:28:46] 2026-03-04 02:27:47,309 | INFO     | current server update state: UPDATING_FINAL
[2026-03-04 03:28:46] 2026-03-04 02:27:47,309 | INFO     | update_server=False
[2026-03-04 03:28:46] 2026-03-04 02:27:47,309 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-04 03:28:46] 2026-03-04 02:27:47,309 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-04 03:28:46] 2026-03-04 02:27:47,310 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-04 03:28:46] 2026-03-04 02:27:47,310 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-04 03:28:46] 2026-03-04 02:27:47,310 | INFO     | aborting loop
[2026-03-04 03:28:46] 2026-03-04 02:27:47,377 | INFO     | all job control threads have been joined
[2026-03-04 03:28:46] 2026-03-04 02:27:47,549 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-04 03:28:46] 2026-03-04 02:27:47,661 | INFO     | all payload control threads have been joined
[2026-03-04 03:28:46] 2026-03-04 02:27:47,804 | INFO     | all data control threads have been joined
[2026-03-04 03:28:46] 2026-03-04 02:27:48,315 | INFO     | [job] retrieve thread has finished
[2026-03-04 03:28:46] 2026-03-04 02:27:48,316 | INFO     | [job] queue monitor thread has finished
[2026-03-04 03:28:46] 2026-03-04 02:27:48,316 | INFO     | [job] job monitor thread has finished
[2026-03-04 03:28:46] 2026-03-04 02:27:48,383 | INFO     | [job] control thread has finished
[2026-03-04 03:28:46] 2026-03-04 02:27:48,500 | INFO     | job.realtimelogging is not enabled
[2026-03-04 03:28:46] 2026-03-04 02:27:48,611 | INFO     | [data] copytool_in thread has finished
[2026-03-04 03:28:46] 2026-03-04 02:27:48,656 | INFO     | [job] validate thread has finished
[2026-03-04 03:28:46] 2026-03-04 02:27:48,667 | INFO     | [payload] control thread has finished
[2026-03-04 03:28:46] 2026-03-04 02:27:48,810 | INFO     | [data] control thread has finished
[2026-03-04 03:28:46] 2026-03-04 02:27:48,840 | INFO     | [payload] failed_post thread has finished
[2026-03-04 03:28:46] 2026-03-04 02:27:48,892 | INFO     | [payload] execute_payloads thread has finished
[2026-03-04 03:28:46] 2026-03-04 02:27:48,893 | INFO     | [payload] validate_pre thread has finished
[2026-03-04 03:28:46] 2026-03-04 02:27:49,387 | INFO     | [payload] validate_post thread has finished
[2026-03-04 03:28:46] 2026-03-04 02:27:49,506 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-04 03:28:46] 2026-03-04 02:27:49,555 | INFO     | [data] copytool_out thread has finished
[2026-03-04 03:28:46] 2026-03-04 02:27:49,753 | INFO     | [job] create_data_payload thread has finished
[2026-03-04 03:28:46] 2026-03-04 02:27:51,316 | INFO     | [data] queue_monitor thread has finished
[2026-03-04 03:28:46] 2026-03-04 02:28:16,988 | INFO     | PID=1369571 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-04 03:28:46] 2026-03-04 02:28:16,988 | INFO     | found 0 job(s) in 20 queues
[2026-03-04 03:28:46] 2026-03-04 02:28:16,988 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-04 03:28:46] 2026-03-04 02:28:16,988 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-04 03:28:46] 2026-03-04 02:28:40,132 | INFO     | [monitor] cgroup control has ended
[2026-03-04 03:28:46] 2026-03-04 02:28:40,878 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140490113374016)>', '<ExcThread(monitor, started 140489151985408)>']
[2026-03-04 03:28:46] 2026-03-04 02:28:41,100 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-04 03:28:46] 2026-03-04 02:28:41,100 | INFO     | [monitor] control thread has ended
[2026-03-04 03:28:46] 2026-03-04 02:28:45,904 | INFO     | all workflow threads have been joined
[2026-03-04 03:28:46] 2026-03-04 02:28:45,905 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-04 03:28:46] 2026-03-04 02:28:45,905 | INFO     | traces error code: 0
[2026-03-04 03:28:46] 2026-03-04 02:28:45,906 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-04 03:28:46] 2026-03-04 02:28:45,989 [wrapper] ==== pilot stdout END ====
[2026-03-04 03:28:46] 2026-03-04 02:28:45,992 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-04 03:28:46] 2026-03-04 02:28:45,995 [wrapper] pilotpid: 1369571
[2026-03-04 03:28:46] 2026-03-04 02:28:45,998 [wrapper] Pilot exit status: 0
[2026-03-04 03:28:46] 2026-03-04 02:28:46,006 [wrapper] pandaids: 7036191646
[2026-03-04 03:28:46] 2026-03-04 02:28:46,024 [wrapper] cleanup supervisor_pilot 1380807 1369572
[2026-03-04 03:28:46] 2026-03-04 02:28:46,027 [wrapper] Test setup, not cleaning
[2026-03-04 03:28:46] 2026-03-04 02:28:46,030 [wrapper] apfmon messages muted
[2026-03-04 03:28:46] 2026-03-04 02:28:46,033 [wrapper] ==== wrapper stdout END ====
[2026-03-04 03:28:46] 2026-03-04 02:28:46,035 [wrapper] ==== wrapper stderr END ====
[2026-03-04 03:28:46]  *** Error codes and diagnostics ***
[2026-03-04 03:28:46]     "exeErrorCode": 0,
[2026-03-04 03:28:46]     "exeErrorDiag": "",
[2026-03-04 03:28:46]     "pilotErrorCode": 0,
[2026-03-04 03:28:46]     "pilotErrorDiag": "",
[2026-03-04 03:28:46]  *** Listing of results directory ***
[2026-03-04 03:28:46] total 427356
[2026-03-04 03:28:46] -rw-r--r-- 1 boinc boinc    584627 Mar  3 05:44 pilot3.tar.gz
[2026-03-04 03:28:46] -rwx------ 1 boinc boinc     36322 Mar  3 05:48 runpilot2-wrapper.sh
[2026-03-04 03:28:46] -rw-r--r-- 1 boinc boinc      5111 Mar  3 05:49 queuedata.json
[2026-03-04 03:28:46] -rw-r--r-- 1 boinc boinc       100 Mar  3 23:57 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-04 03:28:46] -rwxr-xr-x 1 boinc boinc      7986 Mar  3 23:57 run_atlas
[2026-03-04 03:28:46] -rw-r--r-- 1 boinc boinc       105 Mar  3 23:57 job.xml
[2026-03-04 03:28:46] -rw-r--r-- 2 boinc boinc 220557332 Mar  3 23:57 EVNT.48457385._000001.pool.root.1
[2026-03-04 03:28:46] -rw-r--r-- 2 boinc boinc    597971 Mar  3 23:57 input.tar.gz
[2026-03-04 03:28:46] -rw-r--r-- 2 boinc boinc     15845 Mar  3 23:57 start_atlas.sh
[2026-03-04 03:28:46] drwxrwx--x 2 boinc boinc      4096 Mar  3 23:57 shared
[2026-03-04 03:28:46] -rw-r--r-- 1 boinc boinc         0 Mar  3 23:57 boinc_setup_complete
[2026-03-04 03:28:46] -rw-r--r-- 1 boinc boinc      6200 Mar  3 23:57 init_data.xml
[2026-03-04 03:28:46] -rw-r--r-- 1 boinc boinc         0 Mar  3 23:57 boinc_lockfile
[2026-03-04 03:28:46] -rw-r--r-- 1 boinc boinc      2621 Mar  3 23:57 pandaJob.out
[2026-03-04 03:28:46] -rw------- 1 boinc boinc    998484 Mar  3 23:57 agis_schedconf.cvmfs.json
[2026-03-04 03:28:46] -rw------- 1 boinc boinc       430 Mar  3 23:57 workernode_map.json
[2026-03-04 03:28:46] drwx------ 5 boinc boinc      4096 Mar  3 23:57 pilot3
[2026-03-04 03:28:46] -rw-r--r-- 1 boinc boinc       530 Mar  4 03:27 boinc_task_state.xml
[2026-03-04 03:28:46] -rw------- 1 boinc boinc        95 Mar  4 03:27 pilot_heartbeat.json
[2026-03-04 03:28:46] -rw------- 1 boinc boinc 208866957 Mar  4 03:27 HITS.48849583._000006.pool.root.1
[2026-03-04 03:28:46] -rw------- 1 boinc boinc      1017 Mar  4 03:27 memory_monitor_summary.json
[2026-03-04 03:28:46] -rw------- 1 boinc boinc   1516092 Mar  4 03:27 agis_ddmendpoints.agis.ALL.json
[2026-03-04 03:28:46] -rw------- 1 boinc boinc    352592 Mar  4 03:27 log.48849583._000006.job.log.tgz.1
[2026-03-04 03:28:46] -rw------- 1 boinc boinc      6304 Mar  4 03:27 heartbeat.json
[2026-03-04 03:28:46] -rw-r--r-- 1 boinc boinc        28 Mar  4 03:28 wrapper_checkpoint.txt
[2026-03-04 03:28:46] -rw-r--r-- 1 boinc boinc      8192 Mar  4 03:28 boinc_mmap_file
[2026-03-04 03:28:46] -rw------- 1 boinc boinc      4820 Mar  4 03:28 pilotlog.txt
[2026-03-04 03:28:46] -rw------- 1 boinc boinc   1784726 Mar  4 03:28 log.48849583._000006.job.log.1
[2026-03-04 03:28:46] -rw------- 1 boinc boinc       357 Mar  4 03:28 output.list
[2026-03-04 03:28:46] -rw-r--r-- 1 boinc boinc       620 Mar  4 03:28 runtime_log
[2026-03-04 03:28:46] -rw------- 1 boinc boinc   2150400 Mar  4 03:28 result.tar.gz
[2026-03-04 03:28:46] -rw-r--r-- 1 boinc boinc      8917 Mar  4 03:28 runtime_log.err
[2026-03-04 03:28:46] -rw------- 1 boinc boinc       664 Mar  4 03:28 I74KDmfrWH9n9Rq4apOajLDm4fhM0noT9bVooX4SDmSdDLDmNxGY4n.diag
[2026-03-04 03:28:46] -rw-r--r-- 1 boinc boinc     12129 Mar  4 03:28 stderr.txt
[2026-03-04 03:28:46] HITS file was successfully produced:
[2026-03-04 03:28:46] -rw------- 1 boinc boinc 208866957 Mar  4 03:27 shared/HITS.pool.root.1
[2026-03-04 03:28:46]  *** Contents of shared directory: ***
[2026-03-04 03:28:46] total 422068
[2026-03-04 03:28:46] -rw-r--r-- 2 boinc boinc 220557332 Mar  3 23:57 ATLAS.root_0
[2026-03-04 03:28:46] -rw-r--r-- 2 boinc boinc    597971 Mar  3 23:57 input.tar.gz
[2026-03-04 03:28:46] -rw-r--r-- 2 boinc boinc     15845 Mar  3 23:57 start_atlas.sh
[2026-03-04 03:28:46] -rw------- 1 boinc boinc 208866957 Mar  4 03:27 HITS.pool.root.1
[2026-03-04 03:28:46] -rw------- 1 boinc boinc   2150400 Mar  4 03:28 result.tar.gz
03:28:48 (1365525): run_atlas exited; CPU time 37086.590830
03:28:48 (1365525): called boinc_finish(0)

</stderr_txt>
]]>

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