Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
01:32:50 (2201348): wrapper (7.7.26015): starting
01:32:50 (2201348): wrapper: running run_atlas (--nthreads 4)
[2026-03-04 01:32:50] Arguments: --nthreads 4
[2026-03-04 01:32:50] Threads: 4
[2026-03-04 01:32:50] Checking for CVMFS
[2026-03-04 01:32:50] No cvmfs_config command found, will try listing directly
[2026-03-04 01:32:50] CVMFS is ok
[2026-03-04 01:32:50] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-04 01:32:50] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-04 01:32:50] Further information can be found at the LHC@home message board.
[2026-03-04 01:32:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-04 01:32:50] Checking for apptainer binary...
[2026-03-04 01:32:50] which: no apptainer in ((null))
[2026-03-04 01:32:50] apptainer is not installed, using version from CVMFS
[2026-03-04 01:32:50] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-04 01:32:50] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot28/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut04.grid.cesnet.cz
[2026-03-04 01:32:50] apptainer works
[2026-03-04 01:32:50] Set ATHENA_PROC_NUMBER=4
[2026-03-04 01:32:50] Set ATHENA_CORE_NUMBER=4
[2026-03-04 01:32:50] Starting ATLAS job with PandaID=7036192501
[2026-03-04 01:32:50] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot28/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-04 07:18:46]  *** The last 200 lines of the pilot log: ***
[2026-03-04 07:18:46] 2026-03-04 06:17:47,058 | INFO     | preparing for final server update for job 7036192501 in state='finished'
[2026-03-04 07:18:46] 2026-03-04 06:17:47,058 | INFO     | reading metadata from: /scratch/boinc/var/slot28/slots/0/PanDA_Pilot-7036192501/jobReport.json
[2026-03-04 07:18:46] 2026-03-04 06:17:47,061 | INFO     | added worker_node to metadata from /scratch/boinc/var/slot28/slots/0/workernode_map.json
[2026-03-04 07:18:46] 2026-03-04 06:17:47,061 | INFO     | this job has now completed (state=finished)
[2026-03-04 07:18:46] 2026-03-04 06:17:47,062 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-04 07:18:46] 2026-03-04 06:17:47,062 | INFO     | log transfer has been attempted: DONE
[2026-03-04 07:18:46] 2026-03-04 06:17:47,062 | INFO     | job 7036192501 has finished - writing final server update
[2026-03-04 07:18:46] 2026-03-04 06:17:47,062 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_2303094/.job.ad'
[2026-03-04 07:18:46] 2026-03-04 06:17:47,062 | INFO     | total number of processed events: 400 (read)
[2026-03-04 07:18:46] 2026-03-04 06:17:47,075 | INFO     | using path: /scratch/boinc/var/slot28/slots/0/PanDA_Pilot-7036192501/memory_monitor_summary.json (trf name=prmon)
[2026-03-04 07:18:46] 2026-03-04 06:17:47,075 | INFO     | extracted standard info from prmon json
[2026-03-04 07:18:46] 2026-03-04 06:17:47,076 | INFO     | extracted standard memory fields from prmon json
[2026-03-04 07:18:46] 2026-03-04 06:17:47,076 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-04 07:18:46] 2026-03-04 06:17:47,076 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-04 07:18:46] 2026-03-04 06:17:47,076 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-04 07:18:46] 2026-03-04 06:17:47,083 | INFO     | fitting pss+swap vs Time
[2026-03-04 07:18:46] 2026-03-04 06:17:47,083 | INFO     | sum of square deviations: 12080189290.0
[2026-03-04 07:18:46] 2026-03-04 06:17:47,087 | INFO     | sum of deviations: -7184328802.00001
[2026-03-04 07:18:46] 2026-03-04 06:17:47,087 | INFO     | mean x: 1772594718.0
[2026-03-04 07:18:46] 2026-03-04 06:17:47,087 | INFO     | mean y: 2332298.95280236
[2026-03-04 07:18:46] 2026-03-04 06:17:47,087 | INFO     | intersect: 1056529628.2398906
[2026-03-04 07:18:46] 2026-03-04 06:17:47,088 | INFO     | chi2: 1.4667702589434766
[2026-03-04 07:18:46] 2026-03-04 06:17:47,088 | INFO     | sum of square deviations: 11553509647.5
[2026-03-04 07:18:46] 2026-03-04 06:17:47,091 | INFO     | sum of deviations: -7242923328.0
[2026-03-04 07:18:46] 2026-03-04 06:17:47,092 | INFO     | mean x: 1772594565.5
[2026-03-04 07:18:46] 2026-03-04 06:17:47,092 | INFO     | mean y: 2332281.976047904
[2026-03-04 07:18:46] 2026-03-04 06:17:47,092 | INFO     | intersect: 1113576130.9240673
[2026-03-04 07:18:46] 2026-03-04 06:17:47,092 | INFO     | chi2: 1.4664539523256204
[2026-03-04 07:18:46] 2026-03-04 06:17:47,093 | INFO     | current chi2=1.4664539523256204 (change=0.021564837160254167 %)
[2026-03-04 07:18:46] 2026-03-04 06:17:47,093 | INFO     | right removable region: 333
[2026-03-04 07:18:46] 2026-03-04 06:17:47,093 | INFO     | sum of square deviations: 11553509647.5
[2026-03-04 07:18:46] 2026-03-04 06:17:47,096 | INFO     | sum of deviations: -49158686405.00001
[2026-03-04 07:18:46] 2026-03-04 06:17:47,096 | INFO     | mean x: 1772594870.5
[2026-03-04 07:18:46] 2026-03-04 06:17:47,097 | INFO     | mean y: 2344354.2574850298
[2026-03-04 07:18:46] 2026-03-04 06:17:47,097 | INFO     | intersect: 7544505829.050256
[2026-03-04 07:18:46] 2026-03-04 06:17:47,097 | INFO     | chi2: 0.1582244091357318
[2026-03-04 07:18:46] 2026-03-04 06:17:47,097 | INFO     | current chi2=0.1582244091357318 (change=89.21273402082056 %)
[2026-03-04 07:18:46] 2026-03-04 06:17:47,098 | INFO     | sum of square deviations: 11042365180.0
[2026-03-04 07:18:46] 2026-03-04 06:17:47,101 | INFO     | sum of deviations: -42832198224.0
[2026-03-04 07:18:46] 2026-03-04 06:17:47,101 | INFO     | mean x: 1772595023.0
[2026-03-04 07:18:46] 2026-03-04 06:17:47,101 | INFO     | mean y: 2342465.389057751
[2026-03-04 07:18:46] 2026-03-04 06:17:47,101 | INFO     | intersect: 6878056151.57706
[2026-03-04 07:18:46] 2026-03-04 06:17:47,102 | INFO     | chi2: 0.15226990363283047
[2026-03-04 07:18:46] 2026-03-04 06:17:47,102 | INFO     | current chi2=0.15226990363283047 (change=3.763329271018668 %)
[2026-03-04 07:18:46] 2026-03-04 06:17:47,102 | INFO     | left removable region: 20
[2026-03-04 07:18:46] 2026-03-04 06:17:47,102 | INFO     | sum of square deviations: 9508390372.0
[2026-03-04 07:18:46] 2026-03-04 06:17:47,105 | INFO     | sum of deviations: -27114350794.0
[2026-03-04 07:18:46] 2026-03-04 06:17:47,105 | INFO     | mean x: 1772595145.0
[2026-03-04 07:18:46] 2026-03-04 06:17:47,105 | INFO     | mean y: 2337705.6357827475
[2026-03-04 07:18:46] 2026-03-04 06:17:47,105 | INFO     | intersect: 5057111931.019396
[2026-03-04 07:18:46] 2026-03-04 06:17:47,106 | INFO     | chi2: 0.1253017990121809
[2026-03-04 07:18:46] 2026-03-04 06:17:47,106 | INFO     | current memory leak: -2.85 B/s (using 313 data points, chi2=0.13)
[2026-03-04 07:18:46] 2026-03-04 06:17:47,107 | INFO     | could have reported an average CPU frequency of 2584 MHz (15 samples)
[2026-03-04 07:18:46] 2026-03-04 06:17:47,107 | INFO     | ..............................
[2026-03-04 07:18:46] 2026-03-04 06:17:47,107 | INFO     | . Timing measurements:
[2026-03-04 07:18:46] 2026-03-04 06:17:47,107 | INFO     | . get job = 0 s
[2026-03-04 07:18:46] 2026-03-04 06:17:47,107 | INFO     | . initial setup = 6 s
[2026-03-04 07:18:46] 2026-03-04 06:17:47,107 | INFO     | . payload setup = 6 s
[2026-03-04 07:18:46] 2026-03-04 06:17:47,107 | INFO     | . stage-in = 0 s
[2026-03-04 07:18:46] 2026-03-04 06:17:47,107 | INFO     | . payload execution = 20654 s
[2026-03-04 07:18:46] 2026-03-04 06:17:47,107 | INFO     | . stage-out = 1 s
[2026-03-04 07:18:46] 2026-03-04 06:17:47,108 | INFO     | . log creation = 0 s
[2026-03-04 07:18:46] 2026-03-04 06:17:47,108 | INFO     | ..............................
[2026-03-04 07:18:46] 2026-03-04 06:17:47,200 | INFO     | 
[2026-03-04 07:18:46] 2026-03-04 06:17:47,200 | INFO     | job summary report
[2026-03-04 07:18:46] 2026-03-04 06:17:47,201 | INFO     | --------------------------------------------------
[2026-03-04 07:18:46] 2026-03-04 06:17:47,201 | INFO     | PanDA job id: 7036192501
[2026-03-04 07:18:46] 2026-03-04 06:17:47,201 | INFO     | task id: 48851911
[2026-03-04 07:18:46] 2026-03-04 06:17:47,201 | INFO     | errors: (none)
[2026-03-04 07:18:46] 2026-03-04 06:17:47,201 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-04 07:18:46] 2026-03-04 06:17:47,201 | INFO     | pilot state: finished 
[2026-03-04 07:18:46] 2026-03-04 06:17:47,201 | INFO     | transexitcode: 0
[2026-03-04 07:18:46] 2026-03-04 06:17:47,201 | INFO     | exeerrorcode: 0
[2026-03-04 07:18:46] 2026-03-04 06:17:47,201 | INFO     | exeerrordiag: 
[2026-03-04 07:18:46] 2026-03-04 06:17:47,201 | INFO     | exitcode: 0
[2026-03-04 07:18:46] 2026-03-04 06:17:47,201 | INFO     | exitmsg: OK
[2026-03-04 07:18:46] 2026-03-04 06:17:47,201 | INFO     | cpuconsumptiontime: 80559 s
[2026-03-04 07:18:46] 2026-03-04 06:17:47,201 | INFO     | nevents: 400
[2026-03-04 07:18:46] 2026-03-04 06:17:47,202 | INFO     | neventsw: 0
[2026-03-04 07:18:46] 2026-03-04 06:17:47,202 | INFO     | pid: 2209904
[2026-03-04 07:18:46] 2026-03-04 06:17:47,202 | INFO     | pgrp: 2209904
[2026-03-04 07:18:46] 2026-03-04 06:17:47,202 | INFO     | corecount: 4
[2026-03-04 07:18:46] 2026-03-04 06:17:47,202 | INFO     | event service: False
[2026-03-04 07:18:46] 2026-03-04 06:17:47,202 | INFO     | sizes: {0: 2286810, 1: 2287214, 11: 2287214, 20664: 2320825, 20665: 2329845, 20667: 2329901, 20670: 2330223}
[2026-03-04 07:18:46] 2026-03-04 06:17:47,202 | INFO     | --------------------------------------------------
[2026-03-04 07:18:46] 2026-03-04 06:17:47,202 | INFO     | 
[2026-03-04 07:18:46] 2026-03-04 06:17:47,202 | INFO     | executing command: ls -lF /scratch/boinc/var/slot28/slots/0
[2026-03-04 07:18:46] 2026-03-04 06:17:47,224 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-04 07:18:46] 2026-03-04 06:17:47,225 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-04 07:18:46] 2026-03-04 06:17:47,225 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-04 07:18:46] 2026-03-04 06:17:47,225 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-04 07:18:46] 2026-03-04 06:17:47,225 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-04 07:18:46] 2026-03-04 06:17:47,225 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-04 07:18:46] 2026-03-04 06:17:47,225 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-04 07:18:46] 2026-03-04 06:17:47,225 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-04 07:18:46] 2026-03-04 06:17:47,225 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-04 07:18:46] 2026-03-04 06:17:47,225 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-04 07:18:46] 2026-03-04 06:17:47,225 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-04 07:18:46] 2026-03-04 06:17:47,225 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-04 07:18:46] 2026-03-04 06:17:47,226 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-04 07:18:46] 2026-03-04 06:17:47,226 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-04 07:18:46] 2026-03-04 06:17:47,226 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-04 07:18:46] 2026-03-04 06:17:47,226 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-04 07:18:46] 2026-03-04 06:17:47,226 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-04 07:18:46] 2026-03-04 06:17:47,226 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-04 07:18:46] 2026-03-04 06:17:47,226 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-04 07:18:46] 2026-03-04 06:17:47,226 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-04 07:18:46] 2026-03-04 06:17:47,226 | INFO     | job 7036192501 has completed (purged errors)
[2026-03-04 07:18:46] 2026-03-04 06:17:47,227 | INFO     | overall cleanup function is called
[2026-03-04 07:18:46] 2026-03-04 06:17:48,234 | INFO     | --- collectZombieJob: --- 10, [2209904]
[2026-03-04 07:18:46] 2026-03-04 06:17:48,235 | INFO     | zombie collector waiting for pid 2209904
[2026-03-04 07:18:46] 2026-03-04 06:17:48,235 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-04 07:18:46] 2026-03-04 06:17:48,235 | INFO     | collected zombie processes
[2026-03-04 07:18:46] 2026-03-04 06:17:48,235 | INFO     | will attempt to kill all subprocesses of pid=2209904
[2026-03-04 07:18:46] 2026-03-04 06:17:48,556 | INFO     | process IDs to be killed: [2209904] (in reverse order)
[2026-03-04 07:18:46] 2026-03-04 06:17:48,662 | WARNING  | found no corresponding commands to process id(s)
[2026-03-04 07:18:46] 2026-03-04 06:17:48,663 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-04 07:18:46] 2026-03-04 06:17:48,672 | INFO     | did not find any defunct processes belonging to 2209904
[2026-03-04 07:18:46] 2026-03-04 06:17:48,681 | INFO     | did not find any defunct processes belonging to 2209904
[2026-03-04 07:18:46] 2026-03-04 06:17:48,681 | INFO     | ready for new job
[2026-03-04 07:18:46] 2026-03-04 06:17:48,682 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-04 07:18:46] 2026-03-04 06:17:48,684 | INFO     | **************************************
[2026-03-04 07:18:46] 2026-03-04 06:17:48,685 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-04 07:18:46] 2026-03-04 06:17:48,685 | INFO     | **************************************
[2026-03-04 07:18:46] 2026-03-04 06:17:48,685 | INFO     | 
[2026-03-04 07:18:46] 2026-03-04 06:17:48,689 | INFO     | architecture information:
[2026-03-04 07:18:46] 2026-03-04 06:17:48,689 | INFO     | executing command: cat /etc/os-release
[2026-03-04 07:18:46] 2026-03-04 06:17:48,705 | INFO     | cat /etc/os-release:
[2026-03-04 07:18:46] NAME="CentOS Linux"
[2026-03-04 07:18:46] VERSION="7 (Core)"
[2026-03-04 07:18:46] ID="centos"
[2026-03-04 07:18:46] ID_LIKE="rhel fedora"
[2026-03-04 07:18:46] VERSION_ID="7"
[2026-03-04 07:18:46] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-04 07:18:46] ANSI_COLOR="0;31"
[2026-03-04 07:18:46] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-04 07:18:46] HOME_URL="https://www.centos.org/"
[2026-03-04 07:18:46] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-04 07:18:46] 
[2026-03-04 07:18:46] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-04 07:18:46] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-04 07:18:46] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-04 07:18:46] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-04 07:18:46] 
[2026-03-04 07:18:46] 2026-03-04 06:17:48,705 | INFO     | **************************************
[2026-03-04 07:18:46] 2026-03-04 06:17:49,208 | INFO     | executing command: df -mP /scratch/boinc/var/slot28/slots/0
[2026-03-04 07:18:46] 2026-03-04 06:17:49,227 | INFO     | sufficient remaining disk space (672277725184 B)
[2026-03-04 07:18:46] 2026-03-04 06:17:49,227 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-04 07:18:46] 2026-03-04 06:17:49,227 | INFO     | current server update state: UPDATING_FINAL
[2026-03-04 07:18:46] 2026-03-04 06:17:49,228 | INFO     | update_server=False
[2026-03-04 07:18:46] 2026-03-04 06:17:49,228 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-04 07:18:46] 2026-03-04 06:17:49,363 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-04 07:18:46] 2026-03-04 06:17:49,364 | INFO     | aborting loop
[2026-03-04 07:18:46] 2026-03-04 06:17:49,466 | INFO     | all payload control threads have been joined
[2026-03-04 07:18:46] 2026-03-04 06:17:49,554 | INFO     | all data control threads have been joined
[2026-03-04 07:18:46] 2026-03-04 06:17:50,211 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-04 07:18:46] 2026-03-04 06:17:50,233 | INFO     | [job] retrieve thread has finished
[2026-03-04 07:18:46] 2026-03-04 06:17:50,315 | INFO     | [data] copytool_in thread has finished
[2026-03-04 07:18:46] 2026-03-04 06:17:50,368 | INFO     | [job] job monitor thread has finished
[2026-03-04 07:18:46] 2026-03-04 06:17:50,371 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-04 07:18:46] 2026-03-04 06:17:50,470 | INFO     | [payload] control thread has finished
[2026-03-04 07:18:46] 2026-03-04 06:17:50,507 | INFO     | all job control threads have been joined
[2026-03-04 07:18:46] 2026-03-04 06:17:50,559 | INFO     | [data] control thread has finished
[2026-03-04 07:18:46] 2026-03-04 06:17:51,017 | INFO     | [job] validate thread has finished
[2026-03-04 07:18:46] 2026-03-04 06:17:51,124 | INFO     | [payload] execute_payloads thread has finished
[2026-03-04 07:18:46] 2026-03-04 06:17:51,405 | INFO     | [payload] validate_pre thread has finished
[2026-03-04 07:18:46] 2026-03-04 06:17:51,503 | INFO     | [job] create_data_payload thread has finished
[2026-03-04 07:18:46] 2026-03-04 06:17:51,512 | INFO     | [job] control thread has finished
[2026-03-04 07:18:46] 2026-03-04 06:17:51,661 | INFO     | [payload] failed_post thread has finished
[2026-03-04 07:18:46] 2026-03-04 06:17:51,805 | INFO     | [payload] validate_post thread has finished
[2026-03-04 07:18:46] 2026-03-04 06:17:52,211 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-04 07:18:46] 2026-03-04 06:17:52,377 | INFO     | [data] copytool_out thread has finished
[2026-03-04 07:18:46] 2026-03-04 06:17:53,215 | INFO     | [job] queue monitor thread has finished
[2026-03-04 07:18:46] 2026-03-04 06:17:54,217 | INFO     | [data] queue_monitor thread has finished
[2026-03-04 07:18:46] 2026-03-04 06:17:59,175 [wrapper] supervise_pilot (15 min periods counter: 24)
[2026-03-04 07:18:46] 2026-03-04 06:17:59,704 | INFO     | job.realtimelogging is not enabled
[2026-03-04 07:18:46] 2026-03-04 06:18:00,710 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-04 07:18:46] 2026-03-04 06:18:20,294 | INFO     | PID=2205112 has CPU usage=6.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-04 07:18:46] 2026-03-04 06:18:20,294 | INFO     | .. there are 13 such processes running
[2026-03-04 07:18:46] 2026-03-04 06:18:20,295 | INFO     | found 0 job(s) in 20 queues
[2026-03-04 07:18:46] 2026-03-04 06:18:20,295 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-04 07:18:46] 2026-03-04 06:18:20,296 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-04 07:18:46] 2026-03-04 06:18:38,856 | INFO     | [monitor] cgroup control has ended
[2026-03-04 07:18:46] 2026-03-04 06:18:40,947 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22959611127616)>', '<ExcThread(monitor, started 22959367653120)>']
[2026-03-04 07:18:46] 2026-03-04 06:18:41,397 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-04 07:18:46] 2026-03-04 06:18:41,397 | INFO     | [monitor] control thread has ended
[2026-03-04 07:18:46] 2026-03-04 06:18:45,952 | INFO     | all workflow threads have been joined
[2026-03-04 07:18:46] 2026-03-04 06:18:45,952 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-04 07:18:46] 2026-03-04 06:18:45,952 | INFO     | traces error code: 0
[2026-03-04 07:18:46] 2026-03-04 06:18:45,952 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-04 07:18:46] 2026-03-04 06:18:46,113 [wrapper] ==== pilot stdout END ====
[2026-03-04 07:18:46] 2026-03-04 06:18:46,117 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-04 07:18:46] 2026-03-04 06:18:46,120 [wrapper] pilotpid: 2205112
[2026-03-04 07:18:46] 2026-03-04 06:18:46,123 [wrapper] Pilot exit status: 0
[2026-03-04 07:18:46] 2026-03-04 06:18:46,134 [wrapper] pandaids: 7036192501
[2026-03-04 07:18:46] 2026-03-04 06:18:46,201 [wrapper] cleanup supervisor_pilot 2463361 2205113
[2026-03-04 07:18:46] 2026-03-04 06:18:46,205 [wrapper] Test setup, not cleaning
[2026-03-04 07:18:46] 2026-03-04 06:18:46,209 [wrapper] apfmon messages muted
[2026-03-04 07:18:46] 2026-03-04 06:18:46,212 [wrapper] ==== wrapper stdout END ====
[2026-03-04 07:18:46] 2026-03-04 06:18:46,215 [wrapper] ==== wrapper stderr END ====
[2026-03-04 07:18:46]  *** Error codes and diagnostics ***
[2026-03-04 07:18:46]     "exeErrorCode": 0,
[2026-03-04 07:18:46]     "exeErrorDiag": "",
[2026-03-04 07:18:46]     "pilotErrorCode": 0,
[2026-03-04 07:18:46]     "pilotErrorDiag": "",
[2026-03-04 07:18:46]  *** Listing of results directory ***
[2026-03-04 07:18:46] total 360612
[2026-03-04 07:18:46] -rw-r--r-- 1 boinc boinc    584627 Mar  3 05:44 pilot3.tar.gz
[2026-03-04 07:18:46] -rw-r--r-- 1 boinc boinc      5111 Mar  3 05:45 queuedata.json
[2026-03-04 07:18:46] -rwx------ 1 boinc boinc     36322 Mar  3 05:45 runpilot2-wrapper.sh
[2026-03-04 07:18:46] -rw-r--r-- 1 boinc boinc       100 Mar  4 01:32 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-04 07:18:46] -rwxr-xr-x 1 boinc boinc      7986 Mar  4 01:32 run_atlas
[2026-03-04 07:18:46] -rw-r--r-- 1 boinc boinc       105 Mar  4 01:32 job.xml
[2026-03-04 07:18:46] -rw-r--r-- 2 boinc boinc 201435687 Mar  4 01:32 EVNT.48461348._000002.pool.root.1
[2026-03-04 07:18:46] -rw-r--r-- 1 boinc boinc      6639 Mar  4 01:32 init_data.xml
[2026-03-04 07:18:46] -rw-r--r-- 2 boinc boinc     15845 Mar  4 01:32 start_atlas.sh
[2026-03-04 07:18:46] drwxrwx--x 2 boinc boinc      4096 Mar  4 01:32 shared
[2026-03-04 07:18:46] -rw-r--r-- 2 boinc boinc    597981 Mar  4 01:32 input.tar.gz
[2026-03-04 07:18:46] -rw-r--r-- 1 boinc boinc         0 Mar  4 01:32 boinc_lockfile
[2026-03-04 07:18:46] -rw-r--r-- 1 boinc boinc      2647 Mar  4 01:32 pandaJob.out
[2026-03-04 07:18:46] -rw------- 1 boinc boinc    998484 Mar  4 01:32 agis_schedconf.cvmfs.json
[2026-03-04 07:18:46] -rw------- 1 boinc boinc       452 Mar  4 01:33 workernode_map.json
[2026-03-04 07:18:46] drwx------ 5 boinc boinc      4096 Mar  4 01:33 pilot3
[2026-03-04 07:18:46] -rw------- 1 boinc boinc 157112684 Mar  4 07:17 HITS.48851911._000026.pool.root.1
[2026-03-04 07:18:46] -rw------- 1 boinc boinc      1031 Mar  4 07:17 memory_monitor_summary.json
[2026-03-04 07:18:46] -rw-r--r-- 1 boinc boinc       531 Mar  4 07:17 boinc_task_state.xml
[2026-03-04 07:18:46] -rw------- 1 boinc boinc   1516092 Mar  4 07:17 agis_ddmendpoints.agis.ALL.json
[2026-03-04 07:18:46] -rw------- 1 boinc boinc    479813 Mar  4 07:17 log.48851911._000026.job.log.tgz.1
[2026-03-04 07:18:46] -rw------- 1 boinc boinc      6388 Mar  4 07:17 heartbeat.json
[2026-03-04 07:18:46] -rw------- 1 boinc boinc        95 Mar  4 07:18 pilot_heartbeat.json
[2026-03-04 07:18:46] -rw-r--r-- 1 boinc boinc      8192 Mar  4 07:18 boinc_mmap_file
[2026-03-04 07:18:46] -rw-r--r-- 1 boinc boinc        28 Mar  4 07:18 wrapper_checkpoint.txt
[2026-03-04 07:18:46] -rw------- 1 boinc boinc      4902 Mar  4 07:18 pilotlog.txt
[2026-03-04 07:18:46] -rw------- 1 boinc boinc   2908287 Mar  4 07:18 log.48851911._000026.job.log.1
[2026-03-04 07:18:46] -rw------- 1 boinc boinc       357 Mar  4 07:18 output.list
[2026-03-04 07:18:46] -rw-r--r-- 1 boinc boinc       620 Mar  4 07:18 runtime_log
[2026-03-04 07:18:46] -rw------- 1 boinc boinc   3409920 Mar  4 07:18 result.tar.gz
[2026-03-04 07:18:46] -rw-r--r-- 1 boinc boinc      9205 Mar  4 07:18 runtime_log.err
[2026-03-04 07:18:46] -rw------- 1 boinc boinc       666 Mar  4 07:18 lFZMDm2oWH9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmebFLDmHqgaym.diag
[2026-03-04 07:18:46] -rw-r--r-- 1 boinc boinc     21111 Mar  4 07:18 stderr.txt
[2026-03-04 07:18:46] HITS file was successfully produced:
[2026-03-04 07:18:46] -rw------- 1 boinc boinc 157112684 Mar  4 07:17 shared/HITS.pool.root.1
[2026-03-04 07:18:46]  *** Contents of shared directory: ***
[2026-03-04 07:18:46] total 354088
[2026-03-04 07:18:46] -rw-r--r-- 2 boinc boinc 201435687 Mar  4 01:32 ATLAS.root_0
[2026-03-04 07:18:46] -rw-r--r-- 2 boinc boinc     15845 Mar  4 01:32 start_atlas.sh
[2026-03-04 07:18:46] -rw-r--r-- 2 boinc boinc    597981 Mar  4 01:32 input.tar.gz
[2026-03-04 07:18:46] -rw------- 1 boinc boinc 157112684 Mar  4 07:17 HITS.pool.root.1
[2026-03-04 07:18:46] -rw------- 1 boinc boinc   3409920 Mar  4 07:18 result.tar.gz
07:18:47 (2201348): run_atlas exited; CPU time 81328.818366
07:18:47 (2201348): called boinc_finish(0)

</stderr_txt>
]]>

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