Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
03:47:39 (16177): wrapper (7.7.26015): starting
03:47:39 (16177): wrapper: running run_atlas (--nthreads 8)
[2026-03-03 03:47:39] Arguments: --nthreads 8
[2026-03-03 03:47:39] Threads: 8
[2026-03-03 03:47:39] Checking for CVMFS
[2026-03-03 03:47:39] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-03 03:47:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-03 03:47:40] Running cvmfs_config stat atlas.cern.ch
[2026-03-03 03:47:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-03 03:47:40] 2.11.2.0 2876 205177 80416 156838 2 49 11294955 20275200 1 130560 0 53368552 99.844 13876420 31846 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-03-03 03:47:40] CVMFS is ok
[2026-03-03 03:47:40] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-03 03:47:40] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-03 03:47:40] Further information can be found at the LHC@home message board.
[2026-03-03 03:47:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-03 03:47:40] Checking for apptainer binary...
[2026-03-03 03:47:40] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-03 03:47:40] Running /usr/bin/apptainer --version
[2026-03-03 03:47:40] apptainer version 1.3.2-1.el7
[2026-03-03 03:47:40] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-03 03:47:42] c-204-40.aglt2.org
[2026-03-03 03:47:42] apptainer works
[2026-03-03 03:47:42] Set ATHENA_PROC_NUMBER=8
[2026-03-03 03:47:42] Set ATHENA_CORE_NUMBER=8
[2026-03-03 03:47:42] Starting ATLAS job with PandaID=7036191535
[2026-03-03 03:47:42] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-03 11:09:10]  *** The last 200 lines of the pilot log: ***
[2026-03-03 11:09:10] 2026-03-03 16:08:38,020 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-03 11:09:10] 2026-03-03 16:08:38,020 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-03 11:09:10] 2026-03-03 16:08:38,020 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-03 11:09:10] 2026-03-03 16:08:38,027 | INFO     | fitting pss+swap vs Time
[2026-03-03 11:09:10] 2026-03-03 16:08:38,027 | INFO     | sum of square deviations: 25173279432.0
[2026-03-03 11:09:10] 2026-03-03 16:08:38,032 | INFO     | sum of deviations: 47935601085.999985
[2026-03-03 11:09:10] 2026-03-03 16:08:38,032 | INFO     | mean x: 1772540888.0
[2026-03-03 11:09:10] 2026-03-03 16:08:38,032 | INFO     | mean y: 2506769.441108545
[2026-03-03 11:09:10] 2026-03-03 16:08:38,032 | INFO     | intersect: -3372810822.58395
[2026-03-03 11:09:10] 2026-03-03 16:08:38,033 | INFO     | chi2: 1.5909815021144498
[2026-03-03 11:09:10] 2026-03-03 16:08:38,033 | INFO     | sum of square deviations: 24311253967.0
[2026-03-03 11:09:10] 2026-03-03 16:08:38,037 | INFO     | sum of deviations: 47164659692.5
[2026-03-03 11:09:10] 2026-03-03 16:08:38,037 | INFO     | mean x: 1772540735.5
[2026-03-03 11:09:10] 2026-03-03 16:08:38,038 | INFO     | mean y: 2506633.0490654204
[2026-03-03 11:09:10] 2026-03-03 16:08:38,038 | INFO     | intersect: -3436282690.382428
[2026-03-03 11:09:10] 2026-03-03 16:08:38,038 | INFO     | chi2: 1.5912250738081681
[2026-03-03 11:09:10] 2026-03-03 16:08:38,038 | INFO     | current chi2=1.5912250738081681 (change=-0.015309523925617383 %)
[2026-03-03 11:09:10] 2026-03-03 16:08:38,039 | INFO     | right removable region: 427
[2026-03-03 11:09:10] 2026-03-03 16:08:38,039 | INFO     | sum of square deviations: 24311253967.0
[2026-03-03 11:09:10] 2026-03-03 16:08:38,043 | INFO     | sum of deviations: -18833044656.999954
[2026-03-03 11:09:10] 2026-03-03 16:08:38,043 | INFO     | mean x: 1772541040.5
[2026-03-03 11:09:10] 2026-03-03 16:08:38,043 | INFO     | mean y: 2518520.1775700934
[2026-03-03 11:09:10] 2026-03-03 16:08:38,044 | INFO     | intersect: 1375641626.7608309
[2026-03-03 11:09:10] 2026-03-03 16:08:38,044 | INFO     | chi2: 0.15891513202581142
[2026-03-03 11:09:10] 2026-03-03 16:08:38,044 | INFO     | current chi2=0.15891513202581142 (change=90.011503476652 %)
[2026-03-03 11:09:10] 2026-03-03 16:08:38,045 | INFO     | sum of square deviations: 23469135852.0
[2026-03-03 11:09:10] 2026-03-03 16:08:38,049 | INFO     | sum of deviations: -25494239655.000015
[2026-03-03 11:09:10] 2026-03-03 16:08:38,049 | INFO     | mean x: 1772541193.0
[2026-03-03 11:09:10] 2026-03-03 16:08:38,049 | INFO     | mean y: 2519726.3971631206
[2026-03-03 11:09:10] 2026-03-03 16:08:38,049 | INFO     | intersect: 1928009878.9819956
[2026-03-03 11:09:10] 2026-03-03 16:08:38,050 | INFO     | chi2: 0.1480678350206657
[2026-03-03 11:09:10] 2026-03-03 16:08:38,050 | INFO     | current chi2=0.1480678350206657 (change=6.8258427418880885 %)
[2026-03-03 11:09:10] 2026-03-03 16:08:38,050 | INFO     | left removable region: 20
[2026-03-03 11:09:10] 2026-03-03 16:08:38,050 | INFO     | sum of square deviations: 20905426388.0
[2026-03-03 11:09:10] 2026-03-03 16:08:38,054 | INFO     | sum of deviations: -4653893861.99998
[2026-03-03 11:09:10] 2026-03-03 16:08:38,054 | INFO     | mean x: 1772541315.0
[2026-03-03 11:09:10] 2026-03-03 16:08:38,055 | INFO     | mean y: 2515717.7886977885
[2026-03-03 11:09:10] 2026-03-03 16:08:38,055 | INFO     | intersect: 397112746.94831526
[2026-03-03 11:09:10] 2026-03-03 16:08:38,055 | INFO     | chi2: 0.09788485688812365
[2026-03-03 11:09:10] 2026-03-03 16:08:38,055 | INFO     | current memory leak: -0.22 B/s (using 407 data points, chi2=0.10)
[2026-03-03 11:09:10] 2026-03-03 16:08:38,056 | INFO     | could have reported an average CPU frequency of 1729 MHz (18 samples)
[2026-03-03 11:09:10] 2026-03-03 16:08:38,056 | INFO     | ..............................
[2026-03-03 11:09:10] 2026-03-03 16:08:38,056 | INFO     | . Timing measurements:
[2026-03-03 11:09:10] 2026-03-03 16:08:38,056 | INFO     | . get job = 0 s
[2026-03-03 11:09:10] 2026-03-03 16:08:38,056 | INFO     | . initial setup = 8 s
[2026-03-03 11:09:10] 2026-03-03 16:08:38,056 | INFO     | . payload setup = 8 s
[2026-03-03 11:09:10] 2026-03-03 16:08:38,057 | INFO     | . stage-in = 0 s
[2026-03-03 11:09:10] 2026-03-03 16:08:38,057 | INFO     | . payload execution = 26402 s
[2026-03-03 11:09:10] 2026-03-03 16:08:38,057 | INFO     | . stage-out = 2 s
[2026-03-03 11:09:10] 2026-03-03 16:08:38,057 | INFO     | . log creation = 0 s
[2026-03-03 11:09:10] 2026-03-03 16:08:38,057 | INFO     | ..............................
[2026-03-03 11:09:10] 2026-03-03 16:08:38,140 | INFO     | 
[2026-03-03 11:09:10] 2026-03-03 16:08:38,140 | INFO     | job summary report
[2026-03-03 11:09:10] 2026-03-03 16:08:38,140 | INFO     | --------------------------------------------------
[2026-03-03 11:09:10] 2026-03-03 16:08:38,140 | INFO     | PanDA job id: 7036191535
[2026-03-03 11:09:10] 2026-03-03 16:08:38,141 | INFO     | task id: 48848904
[2026-03-03 11:09:10] 2026-03-03 16:08:38,141 | INFO     | errors: (none)
[2026-03-03 11:09:10] 2026-03-03 16:08:38,141 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-03 11:09:10] 2026-03-03 16:08:38,141 | INFO     | pilot state: finished 
[2026-03-03 11:09:10] 2026-03-03 16:08:38,141 | INFO     | transexitcode: 0
[2026-03-03 11:09:10] 2026-03-03 16:08:38,142 | INFO     | exeerrorcode: 0
[2026-03-03 11:09:10] 2026-03-03 16:08:38,142 | INFO     | exeerrordiag: 
[2026-03-03 11:09:10] 2026-03-03 16:08:38,142 | INFO     | exitcode: 0
[2026-03-03 11:09:10] 2026-03-03 16:08:38,142 | INFO     | exitmsg: OK
[2026-03-03 11:09:10] 2026-03-03 16:08:38,142 | INFO     | cpuconsumptiontime: 202566 s
[2026-03-03 11:09:10] 2026-03-03 16:08:38,142 | INFO     | nevents: 400
[2026-03-03 11:09:10] 2026-03-03 16:08:38,143 | INFO     | neventsw: 0
[2026-03-03 11:09:10] 2026-03-03 16:08:38,143 | INFO     | pid: 24666
[2026-03-03 11:09:10] 2026-03-03 16:08:38,143 | INFO     | pgrp: 24666
[2026-03-03 11:09:10] 2026-03-03 16:08:38,143 | INFO     | corecount: 8
[2026-03-03 11:09:10] 2026-03-03 16:08:38,143 | INFO     | event service: False
[2026-03-03 11:09:10] 2026-03-03 16:08:38,143 | INFO     | sizes: {0: 2282133, 1: 2282339, 11: 2282367, 26414: 2318794, 26417: 2332591, 26420: 2332969}
[2026-03-03 11:09:10] 2026-03-03 16:08:38,143 | INFO     | --------------------------------------------------
[2026-03-03 11:09:10] 2026-03-03 16:08:38,144 | INFO     | 
[2026-03-03 11:09:10] 2026-03-03 16:08:38,144 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-03-03 11:09:10] 2026-03-03 16:08:38,169 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-03 11:09:10] 2026-03-03 16:08:38,169 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-03 11:09:10] 2026-03-03 16:08:38,170 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-03 11:09:10] 2026-03-03 16:08:38,170 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-03 11:09:10] 2026-03-03 16:08:38,170 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-03 11:09:10] 2026-03-03 16:08:38,170 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-03 11:09:10] 2026-03-03 16:08:38,170 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-03 11:09:10] 2026-03-03 16:08:38,170 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-03 11:09:10] 2026-03-03 16:08:38,171 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-03 11:09:10] 2026-03-03 16:08:38,171 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-03 11:09:10] 2026-03-03 16:08:38,171 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-03 11:09:10] 2026-03-03 16:08:38,171 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-03 11:09:10] 2026-03-03 16:08:38,171 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-03 11:09:10] 2026-03-03 16:08:38,172 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-03 11:09:10] 2026-03-03 16:08:38,172 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-03 11:09:10] 2026-03-03 16:08:38,172 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-03 11:09:10] 2026-03-03 16:08:38,172 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-03 11:09:10] 2026-03-03 16:08:38,172 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-03 11:09:10] 2026-03-03 16:08:38,172 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-03 11:09:10] 2026-03-03 16:08:38,173 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-03 11:09:10] 2026-03-03 16:08:38,173 | INFO     | job 7036191535 has completed (purged errors)
[2026-03-03 11:09:10] 2026-03-03 16:08:38,173 | INFO     | overall cleanup function is called
[2026-03-03 11:09:10] 2026-03-03 16:08:38,557 | WARNING  | process 24666 can no longer be monitored (due to stat problems) - aborting
[2026-03-03 11:09:10] 2026-03-03 16:08:38,630 | INFO     | using path: /tmp/boinchome/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-03 11:09:10] 2026-03-03 16:08:38,632 | INFO     | using path: /tmp/boinchome/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-03 11:09:10] 2026-03-03 16:08:38,632 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-03-03 11:09:10] 2026-03-03 16:08:38,632 | WARNING  | maxPSS not found in memory monitor output
[2026-03-03 11:09:10] 2026-03-03 16:08:38,633 | INFO     | skipping file size check of payload stdout file (/tmp/boinchome/slots/0/PanDA_Pilot-7036191535/payload.stdout) since it has not been created yet
[2026-03-03 11:09:10] 2026-03-03 16:08:38,633 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-03-03 11:09:10] 2026-03-03 16:08:38,653 | INFO     | sufficient remaining disk space (18445500416 B)
[2026-03-03 11:09:10] 2026-03-03 16:08:38,654 | WARNING  | skipping size check of workdir since it has not been created yet
[2026-03-03 11:09:10] 2026-03-03 16:08:38,654 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/0/PanDA_Pilot-7036191535/HITS.48848904._000048.pool.root.1 since it does not exist
[2026-03-03 11:09:10] 2026-03-03 16:08:38,745 | INFO     | number of running child processes to parent process 24666: 1
[2026-03-03 11:09:10] 2026-03-03 16:08:38,745 | INFO     | maximum number of monitored processes: 6
[2026-03-03 11:09:10] 2026-03-03 16:08:38,746 | INFO     | aborting job monitoring since job object (job id=7036191535) has expired
[2026-03-03 11:09:10] 2026-03-03 16:08:39,182 | INFO     | --- collectZombieJob: --- 10, [24666]
[2026-03-03 11:09:10] 2026-03-03 16:08:39,182 | INFO     | zombie collector waiting for pid 24666
[2026-03-03 11:09:10] 2026-03-03 16:08:39,183 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-03 11:09:10] 2026-03-03 16:08:39,183 | INFO     | collected zombie processes
[2026-03-03 11:09:10] 2026-03-03 16:08:39,183 | INFO     | will attempt to kill all subprocesses of pid=24666
[2026-03-03 11:09:10] 2026-03-03 16:08:39,274 | INFO     | process IDs to be killed: [24666] (in reverse order)
[2026-03-03 11:09:10] 2026-03-03 16:08:39,332 | WARNING  | found no corresponding commands to process id(s)
[2026-03-03 11:09:10] 2026-03-03 16:08:39,332 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-03 11:09:10] 2026-03-03 16:08:39,336 | INFO     | did not find any defunct processes belonging to 24666
[2026-03-03 11:09:10] 2026-03-03 16:08:39,338 | INFO     | did not find any defunct processes belonging to 24666
[2026-03-03 11:09:10] 2026-03-03 16:08:39,338 | INFO     | ready for new job
[2026-03-03 11:09:10] 2026-03-03 16:08:39,339 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-03 11:09:10] 2026-03-03 16:08:39,342 | INFO     | **************************************
[2026-03-03 11:09:10] 2026-03-03 16:08:39,342 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-03 11:09:10] 2026-03-03 16:08:39,342 | INFO     | **************************************
[2026-03-03 11:09:10] 2026-03-03 16:08:39,342 | INFO     | 
[2026-03-03 11:09:10] 2026-03-03 16:08:39,342 | INFO     | architecture information:
[2026-03-03 11:09:10] 2026-03-03 16:08:39,343 | INFO     | executing command: cat /etc/os-release
[2026-03-03 11:09:10] 2026-03-03 16:08:39,361 | INFO     | cat /etc/os-release:
[2026-03-03 11:09:10] NAME="CentOS Linux"
[2026-03-03 11:09:10] VERSION="7 (Core)"
[2026-03-03 11:09:10] ID="centos"
[2026-03-03 11:09:10] ID_LIKE="rhel fedora"
[2026-03-03 11:09:10] VERSION_ID="7"
[2026-03-03 11:09:10] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-03 11:09:10] ANSI_COLOR="0;31"
[2026-03-03 11:09:10] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-03 11:09:10] HOME_URL="https://www.centos.org/"
[2026-03-03 11:09:10] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-03 11:09:10] 
[2026-03-03 11:09:10] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-03 11:09:10] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-03 11:09:10] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-03 11:09:10] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-03 11:09:10] 
[2026-03-03 11:09:10] 2026-03-03 16:08:39,362 | INFO     | **************************************
[2026-03-03 11:09:10] 2026-03-03 16:08:39,865 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-03-03 11:09:10] 2026-03-03 16:08:39,884 | INFO     | sufficient remaining disk space (18449694720 B)
[2026-03-03 11:09:10] 2026-03-03 16:08:39,885 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-03 11:09:10] 2026-03-03 16:08:39,885 | INFO     | current server update state: UPDATING_FINAL
[2026-03-03 11:09:10] 2026-03-03 16:08:39,885 | INFO     | update_server=False
[2026-03-03 11:09:10] 2026-03-03 16:08:39,886 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-03 11:09:10] 2026-03-03 16:08:39,886 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-03 11:09:10] 2026-03-03 16:08:39,886 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-03 11:09:10] 2026-03-03 16:08:39,887 | INFO     | aborting loop
[2026-03-03 11:09:10] 2026-03-03 16:08:39,887 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-03 11:09:10] 2026-03-03 16:08:40,289 | INFO     | all payload control threads have been joined
[2026-03-03 11:09:10] 2026-03-03 16:08:40,390 | INFO     | all data control threads have been joined
[2026-03-03 11:09:10] 2026-03-03 16:08:40,594 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-03 11:09:10] 2026-03-03 16:08:40,694 | INFO     | all job control threads have been joined
[2026-03-03 11:09:10] 2026-03-03 16:08:40,891 | INFO     | [job] retrieve thread has finished
[2026-03-03 11:09:10] 2026-03-03 16:08:40,893 | INFO     | [job] job monitor thread has finished
[2026-03-03 11:09:10] 2026-03-03 16:08:40,893 | INFO     | [job] queue monitor thread has finished
[2026-03-03 11:09:10] 2026-03-03 16:08:41,059 | INFO     | [payload] validate_post thread has finished
[2026-03-03 11:09:10] 2026-03-03 16:08:41,294 | INFO     | [payload] control thread has finished
[2026-03-03 11:09:10] 2026-03-03 16:08:41,396 | INFO     | [data] control thread has finished
[2026-03-03 11:09:10] 2026-03-03 16:08:41,700 | INFO     | [job] control thread has finished
[2026-03-03 11:09:10] 2026-03-03 16:08:41,848 | INFO     | [job] validate thread has finished
[2026-03-03 11:09:10] 2026-03-03 16:08:41,975 | INFO     | [data] copytool_in thread has finished
[2026-03-03 11:09:10] 2026-03-03 16:08:41,977 | INFO     | [payload] execute_payloads thread has finished
[2026-03-03 11:09:10] 2026-03-03 16:08:42,279 | INFO     | [payload] validate_pre thread has finished
[2026-03-03 11:09:10] 2026-03-03 16:08:42,279 | INFO     | [job] create_data_payload thread has finished
[2026-03-03 11:09:10] 2026-03-03 16:08:42,411 | INFO     | [payload] failed_post thread has finished
[2026-03-03 11:09:10] 2026-03-03 16:08:42,600 | INFO     | [data] copytool_out thread has finished
[2026-03-03 11:09:10] 2026-03-03 16:08:43,893 | INFO     | [data] queue_monitor thread has finished
[2026-03-03 11:09:10] 2026-03-03 16:08:49,486 | INFO     | [monitor] cgroup control has ended
[2026-03-03 11:09:10] 2026-03-03 16:08:50,849 | INFO     | job.realtimelogging is not enabled
[2026-03-03 11:09:10] 2026-03-03 16:08:51,855 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-03 11:09:10] 2026-03-03 16:08:51,910 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139853041010496)>', '<ExcThread(monitor, started 139852372760320)>']
[2026-03-03 11:09:10] 2026-03-03 16:08:56,936 | INFO     | all workflow threads have been joined
[2026-03-03 11:09:10] 2026-03-03 16:08:56,936 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-03 11:09:10] 2026-03-03 16:08:56,937 | INFO     | traces error code: 0
[2026-03-03 11:09:10] 2026-03-03 16:08:56,937 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-03 11:09:10] 2026-03-03 16:09:08,616 | INFO     | 26440s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2026-03-03 11:09:10] 2026-03-03 16:09:09,738 | INFO     | PID=20216 has CPU usage=4.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-03-03 11:09:10] 2026-03-03 16:09:09,738 | INFO     | found 0 job(s) in 20 queues
[2026-03-03 11:09:10] 2026-03-03 16:09:09,739 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-03 11:09:10] 2026-03-03 16:09:09,739 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-03 11:09:10] 2026-03-03 16:09:09,739 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-03 11:09:10] 2026-03-03 16:09:09,739 | INFO     | [monitor] control thread has ended
[2026-03-03 11:09:10] 2026-03-03 16:09:09,850 [wrapper] ==== pilot stdout END ====
[2026-03-03 11:09:10] 2026-03-03 16:09:09,854 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-03 11:09:10] 2026-03-03 16:09:09,859 [wrapper] pilotpid: 20216
[2026-03-03 11:09:10] 2026-03-03 16:09:09,864 [wrapper] Pilot exit status: 0
[2026-03-03 11:09:10] 2026-03-03 16:09:09,883 [wrapper] pandaids: 7036191535
[2026-03-03 11:09:10] 2026-03-03 16:09:09,928 [wrapper] cleanup supervisor_pilot 18738 20217
[2026-03-03 11:09:10] 2026-03-03 16:09:09,932 [wrapper] Test setup, not cleaning
[2026-03-03 11:09:10] 2026-03-03 16:09:09,937 [wrapper] apfmon messages muted
[2026-03-03 11:09:10] 2026-03-03 16:09:09,942 [wrapper] ==== wrapper stdout END ====
[2026-03-03 11:09:10] 2026-03-03 16:09:09,946 [wrapper] ==== wrapper stderr END ====
[2026-03-03 11:09:10]  *** Error codes and diagnostics ***
[2026-03-03 11:09:10]     "exeErrorCode": 0,
[2026-03-03 11:09:10]     "exeErrorDiag": "",
[2026-03-03 11:09:10]     "pilotErrorCode": 0,
[2026-03-03 11:09:10]     "pilotErrorDiag": "",
[2026-03-03 11:09:10]  *** Listing of results directory ***
[2026-03-03 11:09:10] total 484460
[2026-03-03 11:09:10] -rw-r--r-- 1 boincer umatlas    584627 Mar  2 23:44 pilot3.tar.gz
[2026-03-03 11:09:10] -rwx------ 1 boincer umatlas     36322 Mar  2 23:48 runpilot2-wrapper.sh
[2026-03-03 11:09:10] -rw-r--r-- 1 boincer umatlas      5111 Mar  2 23:49 queuedata.json
[2026-03-03 11:09:10] -rw-r--r-- 1 boincer umatlas       100 Mar  3 03:47 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-03 11:09:10] -rwxr-xr-x 1 boincer umatlas      7986 Mar  3 03:47 run_atlas
[2026-03-03 11:09:10] -rw-r--r-- 1 boincer umatlas       105 Mar  3 03:47 job.xml
[2026-03-03 11:09:10] -rw-r--r-- 2 boincer umatlas 221430160 Mar  3 03:47 EVNT.48456315._000002.pool.root.1
[2026-03-03 11:09:10] -rw-r--r-- 2 boincer umatlas     15845 Mar  3 03:47 start_atlas.sh
[2026-03-03 11:09:10] drwxrwx--x 2 boincer umatlas      4096 Mar  3 03:47 shared
[2026-03-03 11:09:10] -rw-r--r-- 2 boincer umatlas    597969 Mar  3 03:47 input.tar.gz
[2026-03-03 11:09:10] -rw-r--r-- 1 boincer umatlas         0 Mar  3 03:47 boinc_lockfile
[2026-03-03 11:09:10] -rw-r--r-- 1 boincer umatlas      2613 Mar  3 03:47 pandaJob.out
[2026-03-03 11:09:10] -rw------- 1 boincer umatlas        57 Mar  3 03:47 setup.sh.local
[2026-03-03 11:09:10] -rw------- 1 boincer umatlas    998420 Mar  3 03:47 agis_schedconf.cvmfs.json
[2026-03-03 11:09:10] -rw------- 1 boincer umatlas       433 Mar  3 03:48 workernode_map.json
[2026-03-03 11:09:10] drwx------ 5 boincer umatlas      4096 Mar  3 03:48 pilot3
[2026-03-03 11:09:10] -rw-r--r-- 1 boincer umatlas      5911 Mar  3 11:02 init_data.xml
[2026-03-03 11:09:10] -rw------- 1 boincer umatlas 262197867 Mar  3 11:07 HITS.48848904._000048.pool.root.1
[2026-03-03 11:09:10] -rw-r--r-- 1 boincer umatlas       531 Mar  3 11:08 boinc_task_state.xml
[2026-03-03 11:09:10] -rw------- 1 boincer umatlas      1050 Mar  3 11:08 memory_monitor_summary.json
[2026-03-03 11:09:10] -rw------- 1 boincer umatlas        95 Mar  3 11:08 pilot_heartbeat.json
[2026-03-03 11:09:10] -rw------- 1 boincer umatlas   1516092 Mar  3 11:08 agis_ddmendpoints.agis.ALL.json
[2026-03-03 11:09:10] -rw------- 1 boincer umatlas    638551 Mar  3 11:08 log.48848904._000048.job.log.tgz.1
[2026-03-03 11:09:10] -rw------- 1 boincer umatlas      6395 Mar  3 11:08 heartbeat.json
[2026-03-03 11:09:10] -rw-r--r-- 1 boincer umatlas      8192 Mar  3 11:08 boinc_mmap_file
[2026-03-03 11:09:10] -rw-r--r-- 1 boincer umatlas        29 Mar  3 11:08 wrapper_checkpoint.txt
[2026-03-03 11:09:10] -rw------- 1 boincer umatlas       861 Mar  3 11:09 pilotlog.txt
[2026-03-03 11:09:10] -rw------- 1 boincer umatlas   3621851 Mar  3 11:09 log.48848904._000048.job.log.1
[2026-03-03 11:09:10] -rw------- 1 boincer umatlas       357 Mar  3 11:09 output.list
[2026-03-03 11:09:10] -rw-r--r-- 1 boincer umatlas       620 Mar  3 11:09 runtime_log
[2026-03-03 11:09:10] -rw------- 1 boincer umatlas   4280320 Mar  3 11:09 result.tar.gz
[2026-03-03 11:09:10] -rw-r--r-- 1 boincer umatlas      9342 Mar  3 11:09 runtime_log.err
[2026-03-03 11:09:10] -rw------- 1 boincer umatlas       664 Mar  3 11:09 DKBNDmerWH9n9Rq4apOajLDm4fhM0noT9bVooX4SDmOcDLDmYCJbNn.diag
[2026-03-03 11:09:10] -rw-r--r-- 1 boincer umatlas     21462 Mar  3 11:09 stderr.txt
[2026-03-03 11:09:10] HITS file was successfully produced:
[2026-03-03 11:09:10] -rw------- 1 boincer umatlas 262197867 Mar  3 11:07 shared/HITS.pool.root.1
[2026-03-03 11:09:10]  *** Contents of shared directory: ***
[2026-03-03 11:09:10] total 477088
[2026-03-03 11:09:10] -rw-r--r-- 2 boincer umatlas 221430160 Mar  3 03:47 ATLAS.root_0
[2026-03-03 11:09:10] -rw-r--r-- 2 boincer umatlas     15845 Mar  3 03:47 start_atlas.sh
[2026-03-03 11:09:10] -rw-r--r-- 2 boincer umatlas    597969 Mar  3 03:47 input.tar.gz
[2026-03-03 11:09:10] -rw------- 1 boincer umatlas 262197867 Mar  3 11:07 HITS.pool.root.1
[2026-03-03 11:09:10] -rw------- 1 boincer umatlas   4280320 Mar  3 11:09 result.tar.gz
11:09:11 (16177): run_atlas exited; CPU time 202539.412552
11:09:11 (16177): called boinc_finish(0)

</stderr_txt>
]]>

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