Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
21:32:04 (298167): wrapper (7.7.26015): starting
21:32:04 (298167): wrapper: running run_atlas (--nthreads 3)
[2026-03-03 21:32:04] Arguments: --nthreads 3
[2026-03-03 21:32:04] Threads: 3
[2026-03-03 21:32:04] Checking for CVMFS
[2026-03-03 21:32:04] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-03 21:32:08] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-03 21:32:26] Running cvmfs_config stat atlas.cern.ch
[2026-03-03 21:32:26] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-03 21:32:26] 2.9.2.0 12686 2026 76316 156856 1 49 28606675 36864001 0 130560 0 799346 99.982 73293 16544 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-03 21:32:26] CVMFS is ok
[2026-03-03 21:32:26] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-03 21:32:26] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-03 21:32:26] Further information can be found at the LHC@home message board.
[2026-03-03 21:32:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-03 21:32:26] Checking for apptainer binary...
[2026-03-03 21:32:26] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-03 21:32:26] Running /usr/bin/apptainer --version
[2026-03-03 21:32:26] apptainer version 1.4.1-1.1
[2026-03-03 21:32:26] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-03 21:32:26] thA337a
[2026-03-03 21:32:26] apptainer works
[2026-03-03 21:32:26] Set ATHENA_PROC_NUMBER=3
[2026-03-03 21:32:26] Set ATHENA_CORE_NUMBER=3
[2026-03-03 21:32:26] Starting ATLAS job with PandaID=7036047540
[2026-03-03 21:32:26] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-04 01:49:59]  *** The last 200 lines of the pilot log: ***
[2026-03-04 01:49:59] 2026-03-04 00:49:16,211 | WARNING  | found no corresponding commands to process id(s)
[2026-03-04 01:49:59] 2026-03-04 00:49:16,211 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-04 01:49:59] 2026-03-04 00:49:16,212 | INFO     | did not find any defunct processes belonging to 306640
[2026-03-04 01:49:59] 2026-03-04 00:49:16,213 | INFO     | did not find any defunct processes belonging to 306640
[2026-03-04 01:49:59] 2026-03-04 00:49:16,213 | INFO     | ready for new job
[2026-03-04 01:49:59] 2026-03-04 00:49:16,213 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-04 01:49:59] 2026-03-04 00:49:16,214 | INFO     | **************************************
[2026-03-04 01:49:59] 2026-03-04 00:49:16,214 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-04 01:49:59] 2026-03-04 00:49:16,214 | INFO     | **************************************
[2026-03-04 01:49:59] 2026-03-04 00:49:16,214 | INFO     | 
[2026-03-04 01:49:59] 2026-03-04 00:49:16,215 | INFO     | architecture information:
[2026-03-04 01:49:59] 2026-03-04 00:49:16,215 | INFO     | executing command: cat /etc/os-release
[2026-03-04 01:49:59] 2026-03-04 00:49:16,224 | INFO     | cat /etc/os-release:
[2026-03-04 01:49:59] NAME="CentOS Linux"
[2026-03-04 01:49:59] VERSION="7 (Core)"
[2026-03-04 01:49:59] ID="centos"
[2026-03-04 01:49:59] ID_LIKE="rhel fedora"
[2026-03-04 01:49:59] VERSION_ID="7"
[2026-03-04 01:49:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-04 01:49:59] ANSI_COLOR="0;31"
[2026-03-04 01:49:59] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-04 01:49:59] HOME_URL="https://www.centos.org/"
[2026-03-04 01:49:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-04 01:49:59] 
[2026-03-04 01:49:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-04 01:49:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-04 01:49:59] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-04 01:49:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-04 01:49:59] 
[2026-03-04 01:49:59] 2026-03-04 00:49:16,224 | INFO     | **************************************
[2026-03-04 01:49:59] 2026-03-04 00:49:16,727 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-04 01:49:59] 2026-03-04 00:49:16,741 | INFO     | sufficient remaining disk space (375343022080 B)
[2026-03-04 01:49:59] 2026-03-04 00:49:16,741 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-04 01:49:59] 2026-03-04 00:49:16,741 | INFO     | current server update state: UPDATING_FINAL
[2026-03-04 01:49:59] 2026-03-04 00:49:16,741 | INFO     | update_server=False
[2026-03-04 01:49:59] 2026-03-04 00:49:16,741 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-04 01:49:59] 2026-03-04 00:49:16,741 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-04 01:49:59] 2026-03-04 00:49:16,741 | INFO     | aborting loop
[2026-03-04 01:49:59] 2026-03-04 00:49:16,741 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-04 01:49:59] 2026-03-04 00:49:16,741 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-04 01:49:59] 2026-03-04 00:49:16,742 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-04 01:49:59] 2026-03-04 00:49:17,039 | INFO     | all payload control threads have been joined
[2026-03-04 01:49:59] 2026-03-04 00:49:17,318 | INFO     | all job control threads have been joined
[2026-03-04 01:49:59] 2026-03-04 00:49:17,660 | INFO     | all data control threads have been joined
[2026-03-04 01:49:59] 2026-03-04 00:49:17,747 | INFO     | [job] retrieve thread has finished
[2026-03-04 01:49:59] 2026-03-04 00:49:17,747 | INFO     | [job] job monitor thread has finished
[2026-03-04 01:49:59] 2026-03-04 00:49:17,747 | INFO     | [job] queue monitor thread has finished
[2026-03-04 01:49:59] 2026-03-04 00:49:17,828 | INFO     | [payload] validate_post thread has finished
[2026-03-04 01:49:59] 2026-03-04 00:49:18,045 | INFO     | [payload] control thread has finished
[2026-03-04 01:49:59] 2026-03-04 00:49:18,259 | INFO     | [job] validate thread has finished
[2026-03-04 01:49:59] 2026-03-04 00:49:18,288 | INFO     | [job] create_data_payload thread has finished
[2026-03-04 01:49:59] 2026-03-04 00:49:18,324 | INFO     | [job] control thread has finished
[2026-03-04 01:49:59] 2026-03-04 00:49:18,577 | INFO     | [payload] validate_pre thread has finished
[2026-03-04 01:49:59] 2026-03-04 00:49:18,666 | INFO     | [data] control thread has finished
[2026-03-04 01:49:59] 2026-03-04 00:49:18,666 | INFO     | [data] copytool_in thread has finished
[2026-03-04 01:49:59] 2026-03-04 00:49:18,747 | INFO     | [data] copytool_out thread has finished
[2026-03-04 01:49:59] 2026-03-04 00:49:18,848 | INFO     | [payload] failed_post thread has finished
[2026-03-04 01:49:59] 2026-03-04 00:49:18,895 | INFO     | [payload] execute_payloads thread has finished
[2026-03-04 01:49:59] 2026-03-04 00:49:20,749 | INFO     | [data] queue_monitor thread has finished
[2026-03-04 01:49:59] 2026-03-04 00:49:27,025 | INFO     | job.realtimelogging is not enabled
[2026-03-04 01:49:59] 2026-03-04 00:49:28,031 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-04 01:49:59] 2026-03-04 00:49:47,128 | INFO     | PID=302219 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-04 01:49:59] 2026-03-04 00:49:47,128 | INFO     | found 0 job(s) in 20 queues
[2026-03-04 01:49:59] 2026-03-04 00:49:47,128 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-04 01:49:59] 2026-03-04 00:49:47,129 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-04 01:49:59] 2026-03-04 00:49:53,965 | INFO     | [monitor] cgroup control has ended
[2026-03-04 01:49:59] 2026-03-04 00:49:54,152 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140692362372928)>', '<ExcThread(monitor, started 140691636213504)>']
[2026-03-04 01:49:59] 2026-03-04 00:49:54,166 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-04 01:49:59] 2026-03-04 00:49:54,167 | INFO     | [monitor] control thread has ended
[2026-03-04 01:49:59] 2026-03-04 00:49:59,170 | INFO     | all workflow threads have been joined
[2026-03-04 01:49:59] 2026-03-04 00:49:59,170 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-04 01:49:59] 2026-03-04 00:49:59,170 | INFO     | traces error code: 0
[2026-03-04 01:49:59] 2026-03-04 00:49:59,171 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-04 01:49:59] 2026-03-04 00:49:59,220 [wrapper] ==== pilot stdout END ====
[2026-03-04 01:49:59] 2026-03-04 00:49:59,223 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-04 01:49:59] 2026-03-04 00:49:59,226 [wrapper] pilotpid: 302219
[2026-03-04 01:49:59] 2026-03-04 00:49:59,228 [wrapper] Pilot exit status: 0
[2026-03-04 01:49:59] 2026-03-04 00:49:59,236 [wrapper] pandaids: 7036047540
[2026-03-04 01:49:59] 2026-03-04 00:49:59,253 [wrapper] cleanup supervisor_pilot  315078 302220
[2026-03-04 01:49:59] 2026-03-04 00:49:59,255 [wrapper] Test setup, not cleaning
[2026-03-04 01:49:59] 2026-03-04 00:49:59,258 [wrapper] apfmon messages muted
[2026-03-04 01:49:59] 2026-03-04 00:49:59,261 [wrapper] ==== wrapper stdout END ====
[2026-03-04 01:49:59] 2026-03-04 00:49:59,263 [wrapper] ==== wrapper stderr END ====
[2026-03-04 01:49:59]  *** Error codes and diagnostics ***
[2026-03-04 01:49:59]     "exeErrorCode": 0,
[2026-03-04 01:49:59]     "exeErrorDiag": "",
[2026-03-04 01:49:59]     "pilotErrorCode": 0,
[2026-03-04 01:49:59]     "pilotErrorDiag": "",
[2026-03-04 01:49:59]  *** Listing of results directory ***
[2026-03-04 01:49:59] total 498980
[2026-03-04 01:49:59] -rw-r--r-- 1 boinc boinc    584627 Mar  2 18:50 pilot3.tar.gz
[2026-03-04 01:49:59] -rwx------ 1 boinc boinc     36322 Mar  2 18:51 runpilot2-wrapper.sh
[2026-03-04 01:49:59] -rw-r--r-- 1 boinc boinc      5111 Mar  2 18:51 queuedata.json
[2026-03-04 01:49:59] -rw-r--r-- 1 boinc boinc       100 Mar  3 21:32 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-04 01:49:59] -rwxr-xr-x 1 boinc boinc      7986 Mar  3 21:32 run_atlas
[2026-03-04 01:49:59] -rw-r--r-- 1 boinc boinc       105 Mar  3 21:32 job.xml
[2026-03-04 01:49:59] -rw-r--r-- 2 boinc boinc 236290445 Mar  3 21:32 EVNT.48458247._000001.pool.root.1
[2026-03-04 01:49:59] -rw-r--r-- 2 boinc boinc    597954 Mar  3 21:32 input.tar.gz
[2026-03-04 01:49:59] -rw-r--r-- 2 boinc boinc     15845 Mar  3 21:32 start_atlas.sh
[2026-03-04 01:49:59] drwxrwx--x 2 boinc boinc      4096 Mar  3 21:32 shared
[2026-03-04 01:49:59] -rw-r--r-- 1 boinc boinc         0 Mar  3 21:32 boinc_setup_complete
[2026-03-04 01:49:59] -rw-r--r-- 1 boinc boinc      6447 Mar  3 21:32 init_data.xml
[2026-03-04 01:49:59] -rw-r--r-- 1 boinc boinc         0 Mar  3 21:32 boinc_lockfile
[2026-03-04 01:49:59] -rw-r--r-- 1 boinc boinc      2608 Mar  3 21:32 pandaJob.out
[2026-03-04 01:49:59] -rw------- 1 boinc boinc    998476 Mar  3 21:32 agis_schedconf.cvmfs.json
[2026-03-04 01:49:59] -rw------- 1 boinc boinc       424 Mar  3 21:32 workernode_map.json
[2026-03-04 01:49:59] drwx------ 5 boinc boinc      4096 Mar  3 21:32 pilot3
[2026-03-04 01:49:59] -rw------- 1 boinc boinc        95 Mar  4 01:48 pilot_heartbeat.json
[2026-03-04 01:49:59] -rw------- 1 boinc boinc 265637058 Mar  4 01:48 HITS.48850113._000004.pool.root.1
[2026-03-04 01:49:59] -rw-r--r-- 1 boinc boinc       530 Mar  4 01:48 boinc_task_state.xml
[2026-03-04 01:49:59] -rw------- 1 boinc boinc      1017 Mar  4 01:49 memory_monitor_summary.json
[2026-03-04 01:49:59] -rw------- 1 boinc boinc   1516092 Mar  4 01:49 agis_ddmendpoints.agis.ALL.json
[2026-03-04 01:49:59] -rw------- 1 boinc boinc    389382 Mar  4 01:49 log.48850113._000004.job.log.tgz.1
[2026-03-04 01:49:59] -rw------- 1 boinc boinc      6287 Mar  4 01:49 heartbeat.json
[2026-03-04 01:49:59] -rw-r--r-- 1 boinc boinc      8192 Mar  4 01:49 boinc_mmap_file
[2026-03-04 01:49:59] -rw-r--r-- 1 boinc boinc        28 Mar  4 01:49 wrapper_checkpoint.txt
[2026-03-04 01:49:59] -rw------- 1 boinc boinc      4819 Mar  4 01:49 pilotlog.txt
[2026-03-04 01:49:59] -rw------- 1 boinc boinc   2162995 Mar  4 01:49 log.48850113._000004.job.log.1
[2026-03-04 01:49:59] -rw------- 1 boinc boinc       357 Mar  4 01:49 output.list
[2026-03-04 01:49:59] -rw-r--r-- 1 boinc boinc       620 Mar  4 01:49 runtime_log
[2026-03-04 01:49:59] -rw------- 1 boinc boinc   2570240 Mar  4 01:49 result.tar.gz
[2026-03-04 01:49:59] -rw-r--r-- 1 boinc boinc      8902 Mar  4 01:49 runtime_log.err
[2026-03-04 01:49:59] -rw------- 1 boinc boinc       661 Mar  4 01:49 hJTLDmhbMH9n9Rq4apOajLDm4fhM0noT9bVooX4SDmk7BLDmZMHhMn.diag
[2026-03-04 01:49:59] -rw-r--r-- 1 boinc boinc     10052 Mar  4 01:49 stderr.txt
[2026-03-04 01:49:59] HITS file was successfully produced:
[2026-03-04 01:49:59] -rw------- 1 boinc boinc 265637058 Mar  4 01:48 shared/HITS.pool.root.1
[2026-03-04 01:49:59]  *** Contents of shared directory: ***
[2026-03-04 01:49:59] total 493284
[2026-03-04 01:49:59] -rw-r--r-- 2 boinc boinc 236290445 Mar  3 21:32 ATLAS.root_0
[2026-03-04 01:49:59] -rw-r--r-- 2 boinc boinc    597954 Mar  3 21:32 input.tar.gz
[2026-03-04 01:49:59] -rw-r--r-- 2 boinc boinc     15845 Mar  3 21:32 start_atlas.sh
[2026-03-04 01:49:59] -rw------- 1 boinc boinc 265637058 Mar  4 01:48 HITS.pool.root.1
[2026-03-04 01:49:59] -rw------- 1 boinc boinc   2570240 Mar  4 01:49 result.tar.gz
01:50:00 (298167): run_atlas exited; CPU time 45314.451569
01:50:00 (298167): called boinc_finish(0)

</stderr_txt>
]]>

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