Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
02:39:01 (1285072): wrapper (7.7.26015): starting
02:39:01 (1285072): wrapper: running run_atlas (--nthreads 3)
[2026-03-04 02:39:01] Arguments: --nthreads 3
[2026-03-04 02:39:01] Threads: 3
[2026-03-04 02:39:01] Checking for CVMFS
[2026-03-04 02:39:01] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-04 02:39:02] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-04 02:39:02] Running cvmfs_config stat atlas.cern.ch
[2026-03-04 02:39:02] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-04 02:39:02] 2.9.2.0 35661 9302 86220 156864 0 49 22738231 36864000 0 130560 0 3546472 99.981 359470 7593 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-04 02:39:02] CVMFS is ok
[2026-03-04 02:39:02] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-04 02:39:02] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-04 02:39:02] Further information can be found at the LHC@home message board.
[2026-03-04 02:39:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-04 02:39:02] Checking for apptainer binary...
[2026-03-04 02:39:02] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-04 02:39:02] Running /usr/bin/apptainer --version
[2026-03-04 02:39:02] apptainer version 1.4.1-1.1
[2026-03-04 02:39:02] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-04 02:39:02] magicA250a
[2026-03-04 02:39:02] apptainer works
[2026-03-04 02:39:02] Set ATHENA_PROC_NUMBER=3
[2026-03-04 02:39:02] Set ATHENA_CORE_NUMBER=3
[2026-03-04 02:39:02] Starting ATLAS job with PandaID=7036183945
[2026-03-04 02:39:02] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-04 04:17:23]  *** The last 200 lines of the pilot log: ***
[2026-03-04 04:17:23] 2026-03-04 03:16:49,380 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-04 04:17:23] 2026-03-04 03:16:49,380 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-04 04:17:23] 2026-03-04 03:16:49,380 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-04 04:17:23] 2026-03-04 03:16:49,380 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-04 04:17:23] 2026-03-04 03:16:49,380 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-04 04:17:23] 2026-03-04 03:16:49,380 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-04 04:17:23] 2026-03-04 03:16:49,380 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-04 04:17:23] 2026-03-04 03:16:49,380 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-04 04:17:23] 2026-03-04 03:16:49,380 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-04 04:17:23] 2026-03-04 03:16:49,380 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-04 04:17:23] 2026-03-04 03:16:49,380 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-04 04:17:23] 2026-03-04 03:16:49,380 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-04 04:17:23] 2026-03-04 03:16:49,381 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-04 04:17:23] 2026-03-04 03:16:49,381 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-04 04:17:23] 2026-03-04 03:16:49,381 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-04 04:17:23] 2026-03-04 03:16:49,381 | INFO     | job 7036183945 has completed (purged errors)
[2026-03-04 04:17:23] 2026-03-04 03:16:49,381 | INFO     | overall cleanup function is called
[2026-03-04 04:17:23] 2026-03-04 03:16:49,908 | INFO     | PID=1289114 has CPU usage=3.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-04 04:17:23] 2026-03-04 03:16:50,387 | INFO     | --- collectZombieJob: --- 10, [1293537]
[2026-03-04 04:17:23] 2026-03-04 03:16:50,387 | INFO     | zombie collector waiting for pid 1293537
[2026-03-04 04:17:23] 2026-03-04 03:16:50,388 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-04 04:17:23] 2026-03-04 03:16:50,388 | INFO     | collected zombie processes
[2026-03-04 04:17:23] 2026-03-04 03:16:50,388 | INFO     | will attempt to kill all subprocesses of pid=1293537
[2026-03-04 04:17:23] 2026-03-04 03:16:50,427 | INFO     | process IDs to be killed: [1293537] (in reverse order)
[2026-03-04 04:17:23] 2026-03-04 03:16:50,451 | WARNING  | found no corresponding commands to process id(s)
[2026-03-04 04:17:23] 2026-03-04 03:16:50,451 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-04 04:17:23] 2026-03-04 03:16:50,452 | INFO     | did not find any defunct processes belonging to 1293537
[2026-03-04 04:17:23] 2026-03-04 03:16:50,453 | INFO     | did not find any defunct processes belonging to 1293537
[2026-03-04 04:17:23] 2026-03-04 03:16:50,453 | INFO     | ready for new job
[2026-03-04 04:17:23] 2026-03-04 03:16:50,453 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-04 04:17:23] 2026-03-04 03:16:50,454 | INFO     | **************************************
[2026-03-04 04:17:23] 2026-03-04 03:16:50,454 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-04 04:17:23] 2026-03-04 03:16:50,454 | INFO     | **************************************
[2026-03-04 04:17:23] 2026-03-04 03:16:50,454 | INFO     | 
[2026-03-04 04:17:23] 2026-03-04 03:16:50,455 | INFO     | architecture information:
[2026-03-04 04:17:23] 2026-03-04 03:16:50,455 | INFO     | executing command: cat /etc/os-release
[2026-03-04 04:17:23] 2026-03-04 03:16:50,463 | INFO     | cat /etc/os-release:
[2026-03-04 04:17:23] NAME="CentOS Linux"
[2026-03-04 04:17:23] VERSION="7 (Core)"
[2026-03-04 04:17:23] ID="centos"
[2026-03-04 04:17:23] ID_LIKE="rhel fedora"
[2026-03-04 04:17:23] VERSION_ID="7"
[2026-03-04 04:17:23] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-04 04:17:23] ANSI_COLOR="0;31"
[2026-03-04 04:17:23] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-04 04:17:23] HOME_URL="https://www.centos.org/"
[2026-03-04 04:17:23] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-04 04:17:23] 
[2026-03-04 04:17:23] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-04 04:17:23] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-04 04:17:23] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-04 04:17:23] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-04 04:17:23] 
[2026-03-04 04:17:23] 2026-03-04 03:16:50,463 | INFO     | **************************************
[2026-03-04 04:17:23] 2026-03-04 03:16:50,967 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-04 04:17:23] 2026-03-04 03:16:50,979 | INFO     | sufficient remaining disk space (336671539200 B)
[2026-03-04 04:17:23] 2026-03-04 03:16:50,979 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-04 04:17:23] 2026-03-04 03:16:50,979 | INFO     | current server update state: UPDATING_FINAL
[2026-03-04 04:17:23] 2026-03-04 03:16:50,979 | INFO     | update_server=False
[2026-03-04 04:17:23] 2026-03-04 03:16:50,979 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-04 04:17:23] 2026-03-04 03:16:50,979 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-04 04:17:23] 2026-03-04 03:16:50,979 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-04 04:17:23] 2026-03-04 03:16:50,979 | INFO     | aborting loop
[2026-03-04 04:17:23] 2026-03-04 03:16:50,997 | INFO     | all data control threads have been joined
[2026-03-04 04:17:23] 2026-03-04 03:16:51,033 | INFO     | all payload control threads have been joined
[2026-03-04 04:17:23] 2026-03-04 03:16:51,688 | INFO     | all job control threads have been joined
[2026-03-04 04:17:23] 2026-03-04 03:16:51,985 | INFO     | [job] retrieve thread has finished
[2026-03-04 04:17:23] 2026-03-04 03:16:51,985 | INFO     | [job] queue monitor thread has finished
[2026-03-04 04:17:23] 2026-03-04 03:16:51,985 | INFO     | [job] job monitor thread has finished
[2026-03-04 04:17:23] 2026-03-04 03:16:52,003 | INFO     | [data] control thread has finished
[2026-03-04 04:17:23] 2026-03-04 03:16:52,039 | INFO     | [payload] control thread has finished
[2026-03-04 04:17:23] 2026-03-04 03:16:52,423 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-04 04:17:23] 2026-03-04 03:16:52,428 | INFO     | [payload] execute_payloads thread has finished
[2026-03-04 04:17:23] 2026-03-04 03:16:52,693 | INFO     | [job] control thread has finished
[2026-03-04 04:17:23] 2026-03-04 03:16:52,850 | INFO     | [payload] validate_post thread has finished
[2026-03-04 04:17:23] 2026-03-04 03:16:53,040 | INFO     | [job] validate thread has finished
[2026-03-04 04:17:23] 2026-03-04 03:16:53,078 | INFO     | [job] create_data_payload thread has finished
[2026-03-04 04:17:23] 2026-03-04 03:16:53,128 | INFO     | [payload] validate_pre thread has finished
[2026-03-04 04:17:23] 2026-03-04 03:16:53,149 | INFO     | [payload] failed_post thread has finished
[2026-03-04 04:17:23] 2026-03-04 03:16:53,217 | INFO     | [data] copytool_in thread has finished
[2026-03-04 04:17:23] 2026-03-04 03:16:53,617 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-04 04:17:23] 2026-03-04 03:16:54,429 | INFO     | [data] copytool_out thread has finished
[2026-03-04 04:17:23] 2026-03-04 03:16:57,623 | INFO     | [data] queue_monitor thread has finished
[2026-03-04 04:17:23] 2026-03-04 03:17:01,263 | INFO     | job.realtimelogging is not enabled
[2026-03-04 04:17:23] 2026-03-04 03:17:02,265 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-04 04:17:23] 2026-03-04 03:17:18,075 | INFO     | [monitor] cgroup control has ended
[2026-03-04 04:17:23] 2026-03-04 03:17:18,377 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140580176336704)>', '<ExcThread(monitor, started 140579178542848)>']
[2026-03-04 04:17:23] 2026-03-04 03:17:22,000 | INFO     | PID=1289114 has CPU usage=0.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-04 04:17:23] 2026-03-04 03:17:22,000 | INFO     | found 0 job(s) in 20 queues
[2026-03-04 04:17:23] 2026-03-04 03:17:22,000 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-04 04:17:23] 2026-03-04 03:17:22,000 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-04 04:17:23] 2026-03-04 03:17:22,000 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-04 04:17:23] 2026-03-04 03:17:22,000 | INFO     | [monitor] control thread has ended
[2026-03-04 04:17:23] 2026-03-04 03:17:23,400 | INFO     | all workflow threads have been joined
[2026-03-04 04:17:23] 2026-03-04 03:17:23,400 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-04 04:17:23] 2026-03-04 03:17:23,400 | INFO     | traces error code: 0
[2026-03-04 04:17:23] 2026-03-04 03:17:23,401 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-04 04:17:23] 2026-03-04 03:17:23,448 [wrapper] ==== pilot stdout END ====
[2026-03-04 04:17:23] 2026-03-04 03:17:23,451 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-04 04:17:23] 2026-03-04 03:17:23,453 [wrapper] pilotpid: 1289114
[2026-03-04 04:17:23] 2026-03-04 03:17:23,456 [wrapper] Pilot exit status: 0
[2026-03-04 04:17:23] 2026-03-04 03:17:23,463 [wrapper] pandaids: 7036183945
[2026-03-04 04:17:23] 2026-03-04 03:17:23,478 [wrapper] cleanup supervisor_pilot 1298992 1289115
[2026-03-04 04:17:23] 2026-03-04 03:17:23,481 [wrapper] Test setup, not cleaning
[2026-03-04 04:17:23] 2026-03-04 03:17:23,483 [wrapper] apfmon messages muted
[2026-03-04 04:17:23] 2026-03-04 03:17:23,486 [wrapper] ==== wrapper stdout END ====
[2026-03-04 04:17:23] 2026-03-04 03:17:23,488 [wrapper] ==== wrapper stderr END ====
[2026-03-04 04:17:23]  *** Error codes and diagnostics ***
[2026-03-04 04:17:23]     "exeErrorCode": 0,
[2026-03-04 04:17:23]     "exeErrorDiag": "",
[2026-03-04 04:17:23]     "pilotErrorCode": 0,
[2026-03-04 04:17:23]     "pilotErrorDiag": "",
[2026-03-04 04:17:23]  *** Listing of results directory ***
[2026-03-04 04:17:23] total 515036
[2026-03-04 04:17:23] -rw-r--r-- 1 boinc boinc    584627 Mar  3 04:05 pilot3.tar.gz
[2026-03-04 04:17:23] -rw-r--r-- 1 boinc boinc      5111 Mar  3 04:05 queuedata.json
[2026-03-04 04:17:23] -rwx------ 1 boinc boinc     36322 Mar  3 04:06 runpilot2-wrapper.sh
[2026-03-04 04:17:23] -rw-r--r-- 1 boinc boinc       100 Mar  4 02:39 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-04 04:17:23] -rwxr-xr-x 1 boinc boinc      7986 Mar  4 02:39 run_atlas
[2026-03-04 04:17:23] -rw-r--r-- 1 boinc boinc       105 Mar  4 02:39 job.xml
[2026-03-04 04:17:23] -rw-r--r-- 2 boinc boinc 292901828 Mar  4 02:39 EVNT.48220197._000102.pool.root.1
[2026-03-04 04:17:23] -rw-r--r-- 2 boinc boinc    597977 Mar  4 02:39 input.tar.gz
[2026-03-04 04:17:23] -rw-r--r-- 2 boinc boinc     15845 Mar  4 02:39 start_atlas.sh
[2026-03-04 04:17:23] drwxrwx--x 2 boinc boinc      4096 Mar  4 02:39 shared
[2026-03-04 04:17:23] -rw-r--r-- 1 boinc boinc         0 Mar  4 02:39 boinc_setup_complete
[2026-03-04 04:17:23] -rw-r--r-- 1 boinc boinc      6444 Mar  4 02:39 init_data.xml
[2026-03-04 04:17:23] -rw-r--r-- 1 boinc boinc         0 Mar  4 02:39 boinc_lockfile
[2026-03-04 04:17:23] -rw-r--r-- 1 boinc boinc      2567 Mar  4 02:39 pandaJob.out
[2026-03-04 04:17:23] -rw------- 1 boinc boinc    998484 Mar  4 02:39 agis_schedconf.cvmfs.json
[2026-03-04 04:17:23] -rw------- 1 boinc boinc   1516092 Mar  4 02:39 agis_ddmendpoints.agis.ALL.json
[2026-03-04 04:17:23] -rw------- 1 boinc boinc       431 Mar  4 02:39 workernode_map.json
[2026-03-04 04:17:23] drwx------ 5 boinc boinc      4096 Mar  4 02:39 pilot3
[2026-03-04 04:17:23] -rw------- 1 boinc boinc 228355946 Mar  4 04:16 HITS.48838577._002665.pool.root.1
[2026-03-04 04:17:23] -rw-r--r-- 1 boinc boinc       529 Mar  4 04:16 boinc_task_state.xml
[2026-03-04 04:17:23] -rw------- 1 boinc boinc        95 Mar  4 04:16 pilot_heartbeat.json
[2026-03-04 04:17:23] -rw------- 1 boinc boinc      1022 Mar  4 04:16 memory_monitor_summary.json
[2026-03-04 04:17:23] -rw------- 1 boinc boinc    256321 Mar  4 04:16 log.48838577._002665.job.log.tgz.1
[2026-03-04 04:17:23] -rw------- 1 boinc boinc      6325 Mar  4 04:16 heartbeat.json
[2026-03-04 04:17:23] -rw-r--r-- 1 boinc boinc      8192 Mar  4 04:17 boinc_mmap_file
[2026-03-04 04:17:23] -rw-r--r-- 1 boinc boinc        27 Mar  4 04:17 wrapper_checkpoint.txt
[2026-03-04 04:17:23] -rw------- 1 boinc boinc      4820 Mar  4 04:17 pilotlog.txt
[2026-03-04 04:17:23] -rw------- 1 boinc boinc    850732 Mar  4 04:17 log.48838577._002665.job.log.1
[2026-03-04 04:17:23] -rw------- 1 boinc boinc       357 Mar  4 04:17 output.list
[2026-03-04 04:17:23] -rw-r--r-- 1 boinc boinc       620 Mar  4 04:17 runtime_log
[2026-03-04 04:17:23] -rw------- 1 boinc boinc   1126400 Mar  4 04:17 result.tar.gz
[2026-03-04 04:17:23] -rw-r--r-- 1 boinc boinc      8916 Mar  4 04:17 runtime_log.err
[2026-03-04 04:17:23] -rw------- 1 boinc boinc       661 Mar  4 04:17 5xIKDmoGVH9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmNSFLDmeWj3Do.diag
[2026-03-04 04:17:23] -rw-r--r-- 1 boinc boinc     12664 Mar  4 04:17 stderr.txt
[2026-03-04 04:17:23] HITS file was successfully produced:
[2026-03-04 04:17:23] -rw------- 1 boinc boinc 228355946 Mar  4 04:16 shared/HITS.pool.root.1
[2026-03-04 04:17:23]  *** Contents of shared directory: ***
[2026-03-04 04:17:23] total 510752
[2026-03-04 04:17:23] -rw-r--r-- 2 boinc boinc 292901828 Mar  4 02:39 ATLAS.root_0
[2026-03-04 04:17:23] -rw-r--r-- 2 boinc boinc    597977 Mar  4 02:39 input.tar.gz
[2026-03-04 04:17:23] -rw-r--r-- 2 boinc boinc     15845 Mar  4 02:39 start_atlas.sh
[2026-03-04 04:17:23] -rw------- 1 boinc boinc 228355946 Mar  4 04:16 HITS.pool.root.1
[2026-03-04 04:17:23] -rw------- 1 boinc boinc   1126400 Mar  4 04:17 result.tar.gz
04:17:24 (1285072): run_atlas exited; CPU time 16848.960095
04:17:24 (1285072): called boinc_finish(0)

</stderr_txt>
]]>

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