Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
15:57:30 (3963965): wrapper (7.7.26015): starting
15:57:30 (3963965): wrapper: running run_atlas (--nthreads 4)
[2026-03-04 15:57:30] Arguments: --nthreads 4
[2026-03-04 15:57:30] Threads: 4
[2026-03-04 15:57:30] Checking for CVMFS
[2026-03-04 15:57:30] No cvmfs_config command found, will try listing directly
[2026-03-04 15:57:30] CVMFS is ok
[2026-03-04 15:57:30] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-04 15:57:30] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-04 15:57:30] Further information can be found at the LHC@home message board.
[2026-03-04 15:57:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-04 15:57:30] Checking for apptainer binary...
[2026-03-04 15:57:30] which: no apptainer in ((null))
[2026-03-04 15:57:30] apptainer is not installed, using version from CVMFS
[2026-03-04 15:57:30] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-04 15:57:31] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot196/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut20.grid.cesnet.cz
[2026-03-04 15:57:31] apptainer works
[2026-03-04 15:57:31] Set ATHENA_PROC_NUMBER=4
[2026-03-04 15:57:31] Set ATHENA_CORE_NUMBER=4
[2026-03-04 15:57:31] Starting ATLAS job with PandaID=7036191422
[2026-03-04 15:57:31] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot196/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-04 19:08:08]  *** The last 200 lines of the pilot log: ***
[2026-03-04 19:08:08] 2026-03-04 18:07:09,217 | INFO     | mean x: 1772641924.5
[2026-03-04 19:08:08] 2026-03-04 18:07:09,217 | INFO     | mean y: 2323917.2849462368
[2026-03-04 19:08:08] 2026-03-04 18:07:09,217 | INFO     | intersect: -20709917809.139
[2026-03-04 19:08:08] 2026-03-04 18:07:09,217 | INFO     | chi2: 1.083554357130329
[2026-03-04 19:08:08] 2026-03-04 18:07:09,217 | INFO     | sum of square deviations: 1838657730.0
[2026-03-04 19:08:08] 2026-03-04 18:07:09,218 | INFO     | sum of deviations: 22559194033.000004
[2026-03-04 19:08:08] 2026-03-04 18:07:09,218 | INFO     | mean x: 1772641772.0
[2026-03-04 19:08:08] 2026-03-04 18:07:09,218 | INFO     | mean y: 2323182.502762431
[2026-03-04 19:08:08] 2026-03-04 18:07:09,218 | INFO     | intersect: -21746895844.54745
[2026-03-04 19:08:08] 2026-03-04 18:07:09,218 | INFO     | chi2: 1.0839963540996038
[2026-03-04 19:08:08] 2026-03-04 18:07:09,218 | INFO     | current chi2=1.0839963540996038 (change=-0.040791397899539256 %)
[2026-03-04 19:08:08] 2026-03-04 18:07:09,218 | INFO     | right removable region: 180
[2026-03-04 19:08:08] 2026-03-04 18:07:09,218 | INFO     | sum of square deviations: 1838657730.0
[2026-03-04 19:08:08] 2026-03-04 18:07:09,219 | INFO     | sum of deviations: 5171255602.0
[2026-03-04 19:08:08] 2026-03-04 18:07:09,219 | INFO     | mean x: 1772642077.0
[2026-03-04 19:08:08] 2026-03-04 18:07:09,219 | INFO     | mean y: 2341285.4364640885
[2026-03-04 19:08:08] 2026-03-04 18:07:09,219 | INFO     | intersect: -4983244188.934106
[2026-03-04 19:08:08] 2026-03-04 18:07:09,219 | INFO     | chi2: 0.0013664016670725792
[2026-03-04 19:08:08] 2026-03-04 18:07:09,219 | INFO     | current chi2=0.0013664016670725792 (change=99.87389634326318 %)
[2026-03-04 19:08:08] 2026-03-04 18:07:09,219 | INFO     | sum of square deviations: 1690450300.0
[2026-03-04 19:08:08] 2026-03-04 18:07:09,220 | INFO     | sum of deviations: 4125032890.0
[2026-03-04 19:08:08] 2026-03-04 18:07:09,220 | INFO     | mean x: 1772642229.5
[2026-03-04 19:08:08] 2026-03-04 18:07:09,220 | INFO     | mean y: 2342359.0113636362
[2026-03-04 19:08:08] 2026-03-04 18:07:09,220 | INFO     | intersect: -4323255086.172578
[2026-03-04 19:08:08] 2026-03-04 18:07:09,220 | INFO     | chi2: 0.0007757081635816501
[2026-03-04 19:08:08] 2026-03-04 18:07:09,220 | INFO     | current chi2=0.0007757081635816501 (change=43.22985822729922 %)
[2026-03-04 19:08:08] 2026-03-04 18:07:09,220 | INFO     | sum of square deviations: 1550429070.0
[2026-03-04 19:08:08] 2026-03-04 18:07:09,221 | INFO     | sum of deviations: 3430959335.0
[2026-03-04 19:08:08] 2026-03-04 18:07:09,221 | INFO     | mean x: 1772642382.0
[2026-03-04 19:08:08] 2026-03-04 18:07:09,221 | INFO     | mean y: 2343114.1052631577
[2026-03-04 19:08:08] 2026-03-04 18:07:09,221 | INFO     | intersect: -3920354186.803534
[2026-03-04 19:08:08] 2026-03-04 18:07:09,221 | INFO     | chi2: 0.000589694666840626
[2026-03-04 19:08:08] 2026-03-04 18:07:09,221 | INFO     | current chi2=0.000589694666840626 (change=23.97982971871155 %)
[2026-03-04 19:08:08] 2026-03-04 18:07:09,221 | INFO     | left removable region: 30
[2026-03-04 19:08:08] 2026-03-04 18:07:09,221 | INFO     | sum of square deviations: 1046484737.5
[2026-03-04 19:08:08] 2026-03-04 18:07:09,221 | INFO     | sum of deviations: 1988029314.5
[2026-03-04 19:08:08] 2026-03-04 18:07:09,221 | INFO     | mean x: 1772642656.5
[2026-03-04 19:08:08] 2026-03-04 18:07:09,221 | INFO     | mean y: 2344486.8333333335
[2026-03-04 19:08:08] 2026-03-04 18:07:09,221 | INFO     | intersect: -3365182471.7288823
[2026-03-04 19:08:08] 2026-03-04 18:07:09,222 | INFO     | chi2: 0.00032555970822012323
[2026-03-04 19:08:08] 2026-03-04 18:07:09,222 | INFO     | current memory leak: 1.90 B/s (using 150 data points, chi2=0.00)
[2026-03-04 19:08:08] 2026-03-04 18:07:09,222 | INFO     | could have reported an average CPU frequency of 3660 MHz (10 samples)
[2026-03-04 19:08:08] 2026-03-04 18:07:09,222 | INFO     | ..............................
[2026-03-04 19:08:08] 2026-03-04 18:07:09,222 | INFO     | . Timing measurements:
[2026-03-04 19:08:08] 2026-03-04 18:07:09,222 | INFO     | . get job = 0 s
[2026-03-04 19:08:08] 2026-03-04 18:07:09,222 | INFO     | . initial setup = 4 s
[2026-03-04 19:08:08] 2026-03-04 18:07:09,222 | INFO     | . payload setup = 4 s
[2026-03-04 19:08:08] 2026-03-04 18:07:09,222 | INFO     | . stage-in = 0 s
[2026-03-04 19:08:08] 2026-03-04 18:07:09,222 | INFO     | . payload execution = 11342 s
[2026-03-04 19:08:08] 2026-03-04 18:07:09,222 | INFO     | . stage-out = 1 s
[2026-03-04 19:08:08] 2026-03-04 18:07:09,222 | INFO     | . log creation = 0 s
[2026-03-04 19:08:08] 2026-03-04 18:07:09,222 | INFO     | ..............................
[2026-03-04 19:08:08] 2026-03-04 18:07:09,404 | INFO     | 
[2026-03-04 19:08:08] 2026-03-04 18:07:09,404 | INFO     | job summary report
[2026-03-04 19:08:08] 2026-03-04 18:07:09,404 | INFO     | --------------------------------------------------
[2026-03-04 19:08:08] 2026-03-04 18:07:09,404 | INFO     | PanDA job id: 7036191422
[2026-03-04 19:08:08] 2026-03-04 18:07:09,404 | INFO     | task id: 48849547
[2026-03-04 19:08:08] 2026-03-04 18:07:09,404 | INFO     | errors: (none)
[2026-03-04 19:08:08] 2026-03-04 18:07:09,404 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-04 19:08:08] 2026-03-04 18:07:09,404 | INFO     | pilot state: finished 
[2026-03-04 19:08:08] 2026-03-04 18:07:09,404 | INFO     | transexitcode: 0
[2026-03-04 19:08:08] 2026-03-04 18:07:09,404 | INFO     | exeerrorcode: 0
[2026-03-04 19:08:08] 2026-03-04 18:07:09,404 | INFO     | exeerrordiag: 
[2026-03-04 19:08:08] 2026-03-04 18:07:09,404 | INFO     | exitcode: 0
[2026-03-04 19:08:08] 2026-03-04 18:07:09,404 | INFO     | exitmsg: OK
[2026-03-04 19:08:08] 2026-03-04 18:07:09,404 | INFO     | cpuconsumptiontime: 41716 s
[2026-03-04 19:08:08] 2026-03-04 18:07:09,404 | INFO     | nevents: 400
[2026-03-04 19:08:08] 2026-03-04 18:07:09,404 | INFO     | neventsw: 0
[2026-03-04 19:08:08] 2026-03-04 18:07:09,405 | INFO     | pid: 3974935
[2026-03-04 19:08:08] 2026-03-04 18:07:09,405 | INFO     | pgrp: 3974935
[2026-03-04 19:08:08] 2026-03-04 18:07:09,405 | INFO     | corecount: 4
[2026-03-04 19:08:08] 2026-03-04 18:07:09,405 | INFO     | event service: False
[2026-03-04 19:08:08] 2026-03-04 18:07:09,405 | INFO     | sizes: {0: 2287148, 10: 2287148, 11352: 2316806, 11354: 2334621, 11356: 2334759}
[2026-03-04 19:08:08] 2026-03-04 18:07:09,405 | INFO     | --------------------------------------------------
[2026-03-04 19:08:08] 2026-03-04 18:07:09,405 | INFO     | 
[2026-03-04 19:08:08] 2026-03-04 18:07:09,405 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot196/slots/0
[2026-03-04 19:08:08] 2026-03-04 18:07:09,532 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-04 19:08:08] 2026-03-04 18:07:09,532 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-04 19:08:08] 2026-03-04 18:07:09,532 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-04 19:08:08] 2026-03-04 18:07:09,532 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-04 19:08:08] 2026-03-04 18:07:09,543 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-04 19:08:08] 2026-03-04 18:07:09,543 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-04 19:08:08] 2026-03-04 18:07:09,543 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-04 19:08:08] 2026-03-04 18:07:09,543 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-04 19:08:08] 2026-03-04 18:07:09,543 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-04 19:08:08] 2026-03-04 18:07:09,543 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-04 19:08:08] 2026-03-04 18:07:09,543 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-04 19:08:08] 2026-03-04 18:07:09,543 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-04 19:08:08] 2026-03-04 18:07:09,543 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-04 19:08:08] 2026-03-04 18:07:09,543 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-04 19:08:08] 2026-03-04 18:07:09,543 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-04 19:08:08] 2026-03-04 18:07:09,543 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-04 19:08:08] 2026-03-04 18:07:09,543 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-04 19:08:08] 2026-03-04 18:07:09,543 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-04 19:08:08] 2026-03-04 18:07:09,543 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-04 19:08:08] 2026-03-04 18:07:09,543 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-04 19:08:08] 2026-03-04 18:07:09,543 | INFO     | job 7036191422 has completed (purged errors)
[2026-03-04 19:08:08] 2026-03-04 18:07:09,544 | INFO     | overall cleanup function is called
[2026-03-04 19:08:08] 2026-03-04 18:07:10,371 | WARNING  | process 3974935 can no longer be monitored (due to stat problems) - aborting
[2026-03-04 19:08:08] 2026-03-04 18:07:10,559 | INFO     | --- collectZombieJob: --- 10, [3974935]
[2026-03-04 19:08:08] 2026-03-04 18:07:10,559 | INFO     | zombie collector waiting for pid 3974935
[2026-03-04 19:08:08] 2026-03-04 18:07:10,559 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-04 19:08:08] 2026-03-04 18:07:10,559 | INFO     | collected zombie processes
[2026-03-04 19:08:08] 2026-03-04 18:07:10,559 | INFO     | will attempt to kill all subprocesses of pid=3974935
[2026-03-04 19:08:08] 2026-03-04 18:07:10,884 | INFO     | using path: /var/lib/boinc/var/slot196/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-04 19:08:08] 2026-03-04 18:07:10,884 | INFO     | using path: /var/lib/boinc/var/slot196/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-04 19:08:08] 2026-03-04 18:07:10,885 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-03-04 19:08:08] 2026-03-04 18:07:10,885 | WARNING  | maxPSS not found in memory monitor output
[2026-03-04 19:08:08] 2026-03-04 18:07:10,885 | INFO     | skipping file size check of payload stdout file (/var/lib/boinc/var/slot196/slots/0/PanDA_Pilot-7036191422/payload.stdout) since it has not been created yet
[2026-03-04 19:08:08] 2026-03-04 18:07:10,885 | INFO     | executing command: df -mP /var/lib/boinc/var/slot196/slots/0
[2026-03-04 19:08:08] 2026-03-04 18:07:10,973 | INFO     | sufficient remaining disk space (21123563520 B)
[2026-03-04 19:08:08] 2026-03-04 18:07:10,973 | WARNING  | skipping size check of workdir since it has not been created yet
[2026-03-04 19:08:08] 2026-03-04 18:07:10,974 | INFO     | output file size check: skipping output file /var/lib/boinc/var/slot196/slots/0/PanDA_Pilot-7036191422/HITS.48849547._000056.pool.root.1 since it does not exist
[2026-03-04 19:08:08] 2026-03-04 18:07:11,753 | INFO     | process IDs to be killed: [3974935] (in reverse order)
[2026-03-04 19:08:08] 2026-03-04 18:07:11,885 | INFO     | number of running child processes to parent process 3974935: 1
[2026-03-04 19:08:08] 2026-03-04 18:07:11,885 | INFO     | maximum number of monitored processes: 6
[2026-03-04 19:08:08] 2026-03-04 18:07:11,885 | INFO     | aborting job monitoring since job object (job id=7036191422) has expired
[2026-03-04 19:08:08] 2026-03-04 18:07:12,823 | WARNING  | found no corresponding commands to process id(s)
[2026-03-04 19:08:08] 2026-03-04 18:07:12,823 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-04 19:08:08] 2026-03-04 18:07:12,865 | INFO     | did not find any defunct processes belonging to 3974935
[2026-03-04 19:08:08] 2026-03-04 18:07:12,901 | INFO     | did not find any defunct processes belonging to 3974935
[2026-03-04 19:08:08] 2026-03-04 18:07:12,901 | INFO     | ready for new job
[2026-03-04 19:08:08] 2026-03-04 18:07:12,901 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-04 19:08:08] 2026-03-04 18:07:12,903 | INFO     | **************************************
[2026-03-04 19:08:08] 2026-03-04 18:07:12,903 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-04 19:08:08] 2026-03-04 18:07:12,903 | INFO     | **************************************
[2026-03-04 19:08:08] 2026-03-04 18:07:12,903 | INFO     | 
[2026-03-04 19:08:08] 2026-03-04 18:07:12,908 | INFO     | architecture information:
[2026-03-04 19:08:08] 2026-03-04 18:07:12,909 | INFO     | executing command: cat /etc/os-release
[2026-03-04 19:08:08] 2026-03-04 18:07:12,923 | INFO     | cat /etc/os-release:
[2026-03-04 19:08:08] NAME="CentOS Linux"
[2026-03-04 19:08:08] VERSION="7 (Core)"
[2026-03-04 19:08:08] ID="centos"
[2026-03-04 19:08:08] ID_LIKE="rhel fedora"
[2026-03-04 19:08:08] VERSION_ID="7"
[2026-03-04 19:08:08] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-04 19:08:08] ANSI_COLOR="0;31"
[2026-03-04 19:08:08] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-04 19:08:08] HOME_URL="https://www.centos.org/"
[2026-03-04 19:08:08] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-04 19:08:08] 
[2026-03-04 19:08:08] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-04 19:08:08] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-04 19:08:08] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-04 19:08:08] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-04 19:08:08] 
[2026-03-04 19:08:08] 2026-03-04 18:07:12,923 | INFO     | **************************************
[2026-03-04 19:08:08] 2026-03-04 18:07:13,425 | INFO     | executing command: df -mP /var/lib/boinc/var/slot196/slots/0
[2026-03-04 19:08:08] 2026-03-04 18:07:13,495 | INFO     | sufficient remaining disk space (21123563520 B)
[2026-03-04 19:08:08] 2026-03-04 18:07:13,496 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-04 19:08:08] 2026-03-04 18:07:13,496 | INFO     | current server update state: UPDATING_FINAL
[2026-03-04 19:08:08] 2026-03-04 18:07:13,496 | INFO     | update_server=False
[2026-03-04 19:08:08] 2026-03-04 18:07:13,496 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-04 19:08:08] 2026-03-04 18:07:13,497 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-04 19:08:08] 2026-03-04 18:07:13,497 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-04 19:08:08] 2026-03-04 18:07:13,498 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-04 19:08:08] 2026-03-04 18:07:13,498 | INFO     | aborting loop
[2026-03-04 19:08:08] 2026-03-04 18:07:13,901 | INFO     | all payload control threads have been joined
[2026-03-04 19:08:08] 2026-03-04 18:07:13,948 | INFO     | all job control threads have been joined
[2026-03-04 19:08:08] 2026-03-04 18:07:14,250 | INFO     | all data control threads have been joined
[2026-03-04 19:08:08] 2026-03-04 18:07:14,322 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-04 19:08:08] 2026-03-04 18:07:14,501 | INFO     | [job] retrieve thread has finished
[2026-03-04 19:08:08] 2026-03-04 18:07:14,504 | INFO     | [job] job monitor thread has finished
[2026-03-04 19:08:08] 2026-03-04 18:07:14,551 | INFO     | [payload] validate_post thread has finished
[2026-03-04 19:08:08] 2026-03-04 18:07:14,658 | INFO     | [data] copytool_in thread has finished
[2026-03-04 19:08:08] 2026-03-04 18:07:14,907 | INFO     | [payload] control thread has finished
[2026-03-04 19:08:08] 2026-03-04 18:07:14,919 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-04 19:08:08] 2026-03-04 18:07:14,953 | INFO     | [job] control thread has finished
[2026-03-04 19:08:08] 2026-03-04 18:07:15,021 | INFO     | [payload] execute_payloads thread has finished
[2026-03-04 19:08:08] 2026-03-04 18:07:15,083 | INFO     | [payload] validate_pre thread has finished
[2026-03-04 19:08:08] 2026-03-04 18:07:15,256 | INFO     | [data] control thread has finished
[2026-03-04 19:08:08] 2026-03-04 18:07:15,328 | INFO     | [job] queue monitor thread has finished
[2026-03-04 19:08:08] 2026-03-04 18:07:15,412 | INFO     | [job] create_data_payload thread has finished
[2026-03-04 19:08:08] 2026-03-04 18:07:15,504 | INFO     | [data] copytool_out thread has finished
[2026-03-04 19:08:08] 2026-03-04 18:07:15,559 | INFO     | [payload] failed_post thread has finished
[2026-03-04 19:08:08] 2026-03-04 18:07:15,611 | INFO     | [job] validate thread has finished
[2026-03-04 19:08:08] 2026-03-04 18:07:17,506 | INFO     | [data] queue_monitor thread has finished
[2026-03-04 19:08:08] 2026-03-04 18:07:41,953 | INFO     | PID=3968924 has CPU usage=8.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-04 19:08:08] 2026-03-04 18:07:41,953 | INFO     | .. there are 57 such processes running
[2026-03-04 19:08:08] 2026-03-04 18:07:41,953 | INFO     | found 0 job(s) in 20 queues
[2026-03-04 19:08:08] 2026-03-04 18:07:41,953 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-04 19:08:08] 2026-03-04 18:07:41,953 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-04 19:08:08] 2026-03-04 18:08:01,210 | INFO     | [monitor] cgroup control has ended
[2026-03-04 19:08:08] 2026-03-04 18:08:02,392 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23264879732544)>', '<ExcThread(monitor, started 23264639592192)>']
[2026-03-04 19:08:08] 2026-03-04 18:08:03,083 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-04 19:08:08] 2026-03-04 18:08:03,083 | INFO     | [monitor] control thread has ended
[2026-03-04 19:08:08] 2026-03-04 18:08:07,418 | INFO     | all workflow threads have been joined
[2026-03-04 19:08:08] 2026-03-04 18:08:07,418 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-04 19:08:08] 2026-03-04 18:08:07,418 | INFO     | traces error code: 0
[2026-03-04 19:08:08] 2026-03-04 18:08:07,418 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-04 19:08:08] 2026-03-04 18:08:07,705 [wrapper] ==== pilot stdout END ====
[2026-03-04 19:08:08] 2026-03-04 18:08:07,724 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-04 19:08:08] 2026-03-04 18:08:07,732 [wrapper] pilotpid: 3968924
[2026-03-04 19:08:08] 2026-03-04 18:08:07,735 [wrapper] Pilot exit status: 0
[2026-03-04 19:08:08] 2026-03-04 18:08:07,798 [wrapper] pandaids: 7036191422
[2026-03-04 19:08:08] 2026-03-04 18:08:07,932 [wrapper] cleanup supervisor_pilot 1590054 3968925
[2026-03-04 19:08:08] 2026-03-04 18:08:07,949 [wrapper] Test setup, not cleaning
[2026-03-04 19:08:08] 2026-03-04 18:08:07,954 [wrapper] apfmon messages muted
[2026-03-04 19:08:08] 2026-03-04 18:08:07,961 [wrapper] ==== wrapper stdout END ====
[2026-03-04 19:08:08] 2026-03-04 18:08:07,970 [wrapper] ==== wrapper stderr END ====
[2026-03-04 19:08:08]  *** Error codes and diagnostics ***
[2026-03-04 19:08:08]     "exeErrorCode": 0,
[2026-03-04 19:08:08]     "exeErrorDiag": "",
[2026-03-04 19:08:08]     "pilotErrorCode": 0,
[2026-03-04 19:08:08]     "pilotErrorDiag": "",
[2026-03-04 19:08:08]  *** Listing of results directory ***
[2026-03-04 19:08:08] total 449148
[2026-03-04 19:08:08] -rw-r--r--. 1 boinc boinc    584627 Mar  3 05:44 pilot3.tar.gz
[2026-03-04 19:08:08] -rwx------. 1 boinc boinc     36322 Mar  3 05:45 runpilot2-wrapper.sh
[2026-03-04 19:08:08] -rw-r--r--. 1 boinc boinc      5111 Mar  3 05:45 queuedata.json
[2026-03-04 19:08:08] -rw-r--r--. 1 boinc boinc       100 Mar  4 15:57 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-04 19:08:08] -rwxr-xr-x. 1 boinc boinc      7986 Mar  4 15:57 run_atlas
[2026-03-04 19:08:08] -rw-r--r--. 1 boinc boinc       105 Mar  4 15:57 job.xml
[2026-03-04 19:08:08] -rw-r--r--. 1 boinc boinc      6708 Mar  4 15:57 init_data.xml
[2026-03-04 19:08:08] -rw-r--r--. 2 boinc boinc 236816723 Mar  4 15:57 EVNT.48457331._000003.pool.root.1
[2026-03-04 19:08:08] -rw-r--r--. 2 boinc boinc     15845 Mar  4 15:57 start_atlas.sh
[2026-03-04 19:08:08] drwxrwx--x. 2 boinc boinc      4096 Mar  4 15:57 shared
[2026-03-04 19:08:08] -rw-r--r--. 2 boinc boinc    597960 Mar  4 15:57 input.tar.gz
[2026-03-04 19:08:08] -rw-r--r--. 1 boinc boinc         0 Mar  4 15:57 boinc_lockfile
[2026-03-04 19:08:08] -rw-r--r--. 1 boinc boinc      2611 Mar  4 15:57 pandaJob.out
[2026-03-04 19:08:08] -rw-------. 1 boinc boinc    997352 Mar  4 15:57 agis_schedconf.cvmfs.json
[2026-03-04 19:08:08] -rw-------. 1 boinc boinc       445 Mar  4 15:57 workernode_map.json
[2026-03-04 19:08:08] drwx------. 5 boinc boinc      4096 Mar  4 15:57 pilot3
[2026-03-04 19:08:08] -rw-------. 1 boinc boinc 215276399 Mar  4 19:06 HITS.48849547._000056.pool.root.1
[2026-03-04 19:08:08] -rw-r--r--. 1 boinc boinc       530 Mar  4 19:06 boinc_task_state.xml
[2026-03-04 19:08:08] -rw-------. 1 boinc boinc        95 Mar  4 19:07 pilot_heartbeat.json
[2026-03-04 19:08:08] -rw-------. 1 boinc boinc      1032 Mar  4 19:07 memory_monitor_summary.json
[2026-03-04 19:08:08] -rw-------. 1 boinc boinc   1521291 Mar  4 19:07 agis_ddmendpoints.agis.ALL.json
[2026-03-04 19:08:08] -rw-------. 1 boinc boinc    356545 Mar  4 19:07 log.48849547._000056.job.log.tgz.1
[2026-03-04 19:08:08] -rw-------. 1 boinc boinc      6350 Mar  4 19:07 heartbeat.json
[2026-03-04 19:08:08] -rw-r--r--. 1 boinc boinc        28 Mar  4 19:08 wrapper_checkpoint.txt
[2026-03-04 19:08:08] -rw-r--r--. 1 boinc boinc      8192 Mar  4 19:08 boinc_mmap_file
[2026-03-04 19:08:08] -rw-------. 1 boinc boinc      4830 Mar  4 19:08 pilotlog.txt
[2026-03-04 19:08:08] -rw-------. 1 boinc boinc   1591864 Mar  4 19:08 log.48849547._000056.job.log.1
[2026-03-04 19:08:08] -rw-------. 1 boinc boinc       357 Mar  4 19:08 output.list
[2026-03-04 19:08:08] -rw-r--r--. 1 boinc boinc       620 Mar  4 19:08 runtime_log
[2026-03-04 19:08:08] -rw-------. 1 boinc boinc   1966080 Mar  4 19:08 result.tar.gz
[2026-03-04 19:08:08] -rw-r--r--. 1 boinc boinc      9222 Mar  4 19:08 runtime_log.err
[2026-03-04 19:08:08] -rw-------. 1 boinc boinc       665 Mar  4 19:08 V3LMDmtoWH9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmEZFLDmpjI6en.diag
[2026-03-04 19:08:08] -rw-r--r--. 1 boinc boinc     21253 Mar  4 19:08 stderr.txt
[2026-03-04 19:08:08] HITS file was successfully produced:
[2026-03-04 19:08:08] -rw-------. 1 boinc boinc 215276399 Mar  4 19:06 shared/HITS.pool.root.1
[2026-03-04 19:08:08]  *** Contents of shared directory: ***
[2026-03-04 19:08:08] total 444028
[2026-03-04 19:08:08] -rw-r--r--. 2 boinc boinc 236816723 Mar  4 15:57 ATLAS.root_0
[2026-03-04 19:08:08] -rw-r--r--. 2 boinc boinc     15845 Mar  4 15:57 start_atlas.sh
[2026-03-04 19:08:08] -rw-r--r--. 2 boinc boinc    597960 Mar  4 15:57 input.tar.gz
[2026-03-04 19:08:08] -rw-------. 1 boinc boinc 215276399 Mar  4 19:06 HITS.pool.root.1
[2026-03-04 19:08:08] -rw-------. 1 boinc boinc   1966080 Mar  4 19:08 result.tar.gz
19:08:09 (3963965): run_atlas exited; CPU time 42249.464047
19:08:09 (3963965): called boinc_finish(0)

</stderr_txt>
]]>

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