Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
17:12:59 (1588683): wrapper (7.7.26015): starting
17:12:59 (1588683): wrapper: running run_atlas (--nthreads 4)
[2026-03-03 17:12:59] Arguments: --nthreads 4
[2026-03-03 17:12:59] Threads: 4
[2026-03-03 17:12:59] Checking for CVMFS
[2026-03-03 17:12:59] No cvmfs_config command found, will try listing directly
[2026-03-03 17:12:59] CVMFS is ok
[2026-03-03 17:12:59] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-03 17:12:59] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-03 17:12:59] Further information can be found at the LHC@home message board.
[2026-03-03 17:12:59] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-03 17:12:59] Checking for apptainer binary...
[2026-03-03 17:12:59] which: no apptainer in ((null))
[2026-03-03 17:12:59] apptainer is not installed, using version from CVMFS
[2026-03-03 17:12:59] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-03 17:12:59] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot24/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut01.grid.cesnet.cz
[2026-03-03 17:12:59] apptainer works
[2026-03-03 17:12:59] Set ATHENA_PROC_NUMBER=4
[2026-03-03 17:12:59] Set ATHENA_CORE_NUMBER=4
[2026-03-03 17:12:59] Starting ATLAS job with PandaID=7036184820
[2026-03-03 17:12:59] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot24/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-03 21:06:45]  *** The last 200 lines of the pilot log: ***
[2026-03-03 21:06:45] 2026-03-03 20:05:40,325 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_999830/.job.ad'
[2026-03-03 21:06:45] 2026-03-03 20:05:40,325 | INFO     | total number of processed events: 400 (read)
[2026-03-03 21:06:45] 2026-03-03 20:05:40,353 | INFO     | using path: /scratch/boinc/var/slot24/slots/0/PanDA_Pilot-7036184820/memory_monitor_summary.json (trf name=prmon)
[2026-03-03 21:06:45] 2026-03-03 20:05:40,354 | INFO     | extracted standard info from prmon json
[2026-03-03 21:06:45] 2026-03-03 20:05:40,354 | INFO     | extracted standard memory fields from prmon json
[2026-03-03 21:06:45] 2026-03-03 20:05:40,354 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-03 21:06:45] 2026-03-03 20:05:40,355 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-03 21:06:45] 2026-03-03 20:05:40,355 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-03 21:06:45] 2026-03-03 20:05:40,359 | INFO     | fitting pss+swap vs Time
[2026-03-03 21:06:45] 2026-03-03 20:05:40,360 | INFO     | sum of square deviations: 3723716330.0
[2026-03-03 21:06:45] 2026-03-03 20:05:40,362 | INFO     | sum of deviations: 19875237342.999992
[2026-03-03 21:06:45] 2026-03-03 20:05:40,362 | INFO     | mean x: 1772561373.0
[2026-03-03 21:06:45] 2026-03-03 20:05:40,362 | INFO     | mean y: 2333126.7030567685
[2026-03-03 21:06:45] 2026-03-03 20:05:40,362 | INFO     | intersect: -9458666281.221483
[2026-03-03 21:06:45] 2026-03-03 20:05:40,363 | INFO     | chi2: 2.132580595484434
[2026-03-03 21:06:45] 2026-03-03 20:05:40,363 | INFO     | sum of square deviations: 3485088600.0
[2026-03-03 21:06:45] 2026-03-03 20:05:40,365 | INFO     | sum of deviations: 33797730394.0
[2026-03-03 21:06:45] 2026-03-03 20:05:40,365 | INFO     | mean x: 1772561220.5
[2026-03-03 21:06:45] 2026-03-03 20:05:40,365 | INFO     | mean y: 2341859.223214286
[2026-03-03 21:06:45] 2026-03-03 20:05:40,365 | INFO     | intersect: -17187621758.148975
[2026-03-03 21:06:45] 2026-03-03 20:05:40,366 | INFO     | chi2: 1.326978987573747
[2026-03-03 21:06:45] 2026-03-03 20:05:40,366 | INFO     | current chi2=1.326978987573747 (change=37.77590444255579 %)
[2026-03-03 21:06:45] 2026-03-03 20:05:40,366 | INFO     | sum of square deviations: 3256879670.0
[2026-03-03 21:06:45] 2026-03-03 20:05:40,368 | INFO     | sum of deviations: 32896077498.999996
[2026-03-03 21:06:45] 2026-03-03 20:05:40,368 | INFO     | mean x: 1772561068.0
[2026-03-03 21:06:45] 2026-03-03 20:05:40,368 | INFO     | mean y: 2341256.598173516
[2026-03-03 21:06:45] 2026-03-03 20:05:40,368 | INFO     | intersect: -17901392431.12453
[2026-03-03 21:06:45] 2026-03-03 20:05:40,369 | INFO     | chi2: 1.3274261966241205
[2026-03-03 21:06:45] 2026-03-03 20:05:40,369 | INFO     | current chi2=1.3274261966241205 (change=-0.033701291019778784 %)
[2026-03-03 21:06:45] 2026-03-03 20:05:40,369 | INFO     | right removable region: 218
[2026-03-03 21:06:45] 2026-03-03 20:05:40,370 | INFO     | sum of square deviations: 3485088600.0
[2026-03-03 21:06:45] 2026-03-03 20:05:40,372 | INFO     | sum of deviations: -11026402913.5
[2026-03-03 21:06:45] 2026-03-03 20:05:40,372 | INFO     | mean x: 1772561525.5
[2026-03-03 21:06:45] 2026-03-03 20:05:40,372 | INFO     | mean y: 2352677.65625
[2026-03-03 21:06:45] 2026-03-03 20:05:40,372 | INFO     | intersect: 5610525040.6576395
[2026-03-03 21:06:45] 2026-03-03 20:05:40,372 | INFO     | chi2: 0.8295928257352359
[2026-03-03 21:06:45] 2026-03-03 20:05:40,373 | INFO     | current chi2=0.8295928257352359 (change=61.09911027551169 %)
[2026-03-03 21:06:45] 2026-03-03 20:05:40,373 | INFO     | sum of square deviations: 3256879670.0
[2026-03-03 21:06:45] 2026-03-03 20:05:40,375 | INFO     | sum of deviations: -12871421876.0
[2026-03-03 21:06:45] 2026-03-03 20:05:40,375 | INFO     | mean x: 1772561678.0
[2026-03-03 21:06:45] 2026-03-03 20:05:40,375 | INFO     | mean y: 2353896.99086758
[2026-03-03 21:06:45] 2026-03-03 20:05:40,375 | INFO     | intersect: 7007644687.721392
[2026-03-03 21:06:45] 2026-03-03 20:05:40,376 | INFO     | chi2: 0.8233338495647871
[2026-03-03 21:06:45] 2026-03-03 20:05:40,376 | INFO     | current chi2=0.8233338495647871 (change=0.7544636327950047 %)
[2026-03-03 21:06:45] 2026-03-03 20:05:40,376 | INFO     | left removable region: 20
[2026-03-03 21:06:45] 2026-03-03 20:05:40,376 | INFO     | sum of square deviations: 2406926989.5
[2026-03-03 21:06:45] 2026-03-03 20:05:40,378 | INFO     | sum of deviations: 313649525.4999998
[2026-03-03 21:06:45] 2026-03-03 20:05:40,378 | INFO     | mean x: 1772561647.5
[2026-03-03 21:06:45] 2026-03-03 20:05:40,378 | INFO     | mean y: 2363893.287878788
[2026-03-03 21:06:45] 2026-03-03 20:05:40,378 | INFO     | intersect: -228620728.21630952
[2026-03-03 21:06:45] 2026-03-03 20:05:40,378 | INFO     | chi2: 0.0005459137306306275
[2026-03-03 21:06:45] 2026-03-03 20:05:40,379 | INFO     | current memory leak: 0.13 B/s (using 198 data points, chi2=0.00)
[2026-03-03 21:06:45] 2026-03-03 20:05:40,379 | INFO     | could have reported an average CPU frequency of 2661 MHz (11 samples)
[2026-03-03 21:06:45] 2026-03-03 20:05:40,379 | INFO     | ..............................
[2026-03-03 21:06:45] 2026-03-03 20:05:40,380 | INFO     | . Timing measurements:
[2026-03-03 21:06:45] 2026-03-03 20:05:40,380 | INFO     | . get job = 0 s
[2026-03-03 21:06:45] 2026-03-03 20:05:40,380 | INFO     | . initial setup = 5 s
[2026-03-03 21:06:45] 2026-03-03 20:05:40,380 | INFO     | . payload setup = 5 s
[2026-03-03 21:06:45] 2026-03-03 20:05:40,380 | INFO     | . stage-in = 0 s
[2026-03-03 21:06:45] 2026-03-03 20:05:40,380 | INFO     | . payload execution = 13918 s
[2026-03-03 21:06:45] 2026-03-03 20:05:40,380 | INFO     | . stage-out = 1 s
[2026-03-03 21:06:45] 2026-03-03 20:05:40,380 | INFO     | . log creation = 0 s
[2026-03-03 21:06:45] 2026-03-03 20:05:40,380 | INFO     | ..............................
[2026-03-03 21:06:45] 2026-03-03 20:05:40,478 | INFO     | 
[2026-03-03 21:06:45] 2026-03-03 20:05:40,478 | INFO     | job summary report
[2026-03-03 21:06:45] 2026-03-03 20:05:40,478 | INFO     | --------------------------------------------------
[2026-03-03 21:06:45] 2026-03-03 20:05:40,478 | INFO     | PanDA job id: 7036184820
[2026-03-03 21:06:45] 2026-03-03 20:05:40,479 | INFO     | task id: 48838577
[2026-03-03 21:06:45] 2026-03-03 20:05:40,479 | INFO     | errors: (none)
[2026-03-03 21:06:45] 2026-03-03 20:05:40,479 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-03 21:06:45] 2026-03-03 20:05:40,479 | INFO     | pilot state: finished 
[2026-03-03 21:06:45] 2026-03-03 20:05:40,479 | INFO     | transexitcode: 0
[2026-03-03 21:06:45] 2026-03-03 20:05:40,479 | INFO     | exeerrorcode: 0
[2026-03-03 21:06:45] 2026-03-03 20:05:40,479 | INFO     | exeerrordiag: 
[2026-03-03 21:06:45] 2026-03-03 20:05:40,479 | INFO     | exitcode: 0
[2026-03-03 21:06:45] 2026-03-03 20:05:40,479 | INFO     | exitmsg: OK
[2026-03-03 21:06:45] 2026-03-03 20:05:40,479 | INFO     | cpuconsumptiontime: 53664 s
[2026-03-03 21:06:45] 2026-03-03 20:05:40,479 | INFO     | nevents: 400
[2026-03-03 21:06:45] 2026-03-03 20:05:40,479 | INFO     | neventsw: 0
[2026-03-03 21:06:45] 2026-03-03 20:05:40,480 | INFO     | pid: 1597650
[2026-03-03 21:06:45] 2026-03-03 20:05:40,480 | INFO     | pgrp: 1597650
[2026-03-03 21:06:45] 2026-03-03 20:05:40,480 | INFO     | corecount: 4
[2026-03-03 21:06:45] 2026-03-03 20:05:40,480 | INFO     | event service: False
[2026-03-03 21:06:45] 2026-03-03 20:05:40,480 | INFO     | sizes: {0: 2287089, 11: 2287089, 13928: 2317458, 13929: 2326478, 13932: 2326728}
[2026-03-03 21:06:45] 2026-03-03 20:05:40,480 | INFO     | --------------------------------------------------
[2026-03-03 21:06:45] 2026-03-03 20:05:40,480 | INFO     | 
[2026-03-03 21:06:45] 2026-03-03 20:05:40,480 | INFO     | executing command: ls -lF /scratch/boinc/var/slot24/slots/0
[2026-03-03 21:06:45] 2026-03-03 20:05:40,500 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-03 21:06:45] 2026-03-03 20:05:40,500 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-03 21:06:45] 2026-03-03 20:05:40,500 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-03 21:06:45] 2026-03-03 20:05:40,500 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-03 21:06:45] 2026-03-03 20:05:40,501 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-03 21:06:45] 2026-03-03 20:05:40,501 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-03 21:06:45] 2026-03-03 20:05:40,501 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-03 21:06:45] 2026-03-03 20:05:40,501 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-03 21:06:45] 2026-03-03 20:05:40,501 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-03 21:06:45] 2026-03-03 20:05:40,501 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-03 21:06:45] 2026-03-03 20:05:40,501 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-03 21:06:45] 2026-03-03 20:05:40,501 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-03 21:06:45] 2026-03-03 20:05:40,501 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-03 21:06:45] 2026-03-03 20:05:40,501 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-03 21:06:45] 2026-03-03 20:05:40,501 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-03 21:06:45] 2026-03-03 20:05:40,502 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-03 21:06:45] 2026-03-03 20:05:40,502 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-03 21:06:45] 2026-03-03 20:05:40,502 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-03 21:06:45] 2026-03-03 20:05:40,502 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-03 21:06:45] 2026-03-03 20:05:40,502 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-03 21:06:45] 2026-03-03 20:05:40,502 | INFO     | job 7036184820 has completed (purged errors)
[2026-03-03 21:06:45] 2026-03-03 20:05:40,502 | INFO     | overall cleanup function is called
[2026-03-03 21:06:45] 2026-03-03 20:05:41,047 | INFO     | PID=1592869 has CPU usage=14.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-03-03 21:06:45] 2026-03-03 20:05:41,048 | INFO     | .. there are 12 such processes running
[2026-03-03 21:06:45] 2026-03-03 20:05:41,509 | INFO     | --- collectZombieJob: --- 10, [1597650]
[2026-03-03 21:06:45] 2026-03-03 20:05:41,509 | INFO     | zombie collector waiting for pid 1597650
[2026-03-03 21:06:45] 2026-03-03 20:05:41,510 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-03 21:06:45] 2026-03-03 20:05:41,510 | INFO     | collected zombie processes
[2026-03-03 21:06:45] 2026-03-03 20:05:41,510 | INFO     | will attempt to kill all subprocesses of pid=1597650
[2026-03-03 21:06:45] 2026-03-03 20:05:41,855 | INFO     | process IDs to be killed: [1597650] (in reverse order)
[2026-03-03 21:06:45] 2026-03-03 20:05:41,970 | WARNING  | found no corresponding commands to process id(s)
[2026-03-03 21:06:45] 2026-03-03 20:05:41,970 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-03 21:06:45] 2026-03-03 20:05:41,983 | INFO     | did not find any defunct processes belonging to 1597650
[2026-03-03 21:06:45] 2026-03-03 20:05:41,995 | INFO     | did not find any defunct processes belonging to 1597650
[2026-03-03 21:06:45] 2026-03-03 20:05:41,995 | INFO     | ready for new job
[2026-03-03 21:06:45] 2026-03-03 20:05:41,996 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-03 21:06:45] 2026-03-03 20:05:41,998 | INFO     | **************************************
[2026-03-03 21:06:45] 2026-03-03 20:05:41,999 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-03 21:06:45] 2026-03-03 20:05:41,999 | INFO     | **************************************
[2026-03-03 21:06:45] 2026-03-03 20:05:41,999 | INFO     | 
[2026-03-03 21:06:45] 2026-03-03 20:05:42,002 | INFO     | architecture information:
[2026-03-03 21:06:45] 2026-03-03 20:05:42,003 | INFO     | executing command: cat /etc/os-release
[2026-03-03 21:06:45] 2026-03-03 20:05:42,017 | INFO     | cat /etc/os-release:
[2026-03-03 21:06:45] NAME="CentOS Linux"
[2026-03-03 21:06:45] VERSION="7 (Core)"
[2026-03-03 21:06:45] ID="centos"
[2026-03-03 21:06:45] ID_LIKE="rhel fedora"
[2026-03-03 21:06:45] VERSION_ID="7"
[2026-03-03 21:06:45] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-03 21:06:45] ANSI_COLOR="0;31"
[2026-03-03 21:06:45] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-03 21:06:45] HOME_URL="https://www.centos.org/"
[2026-03-03 21:06:45] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-03 21:06:45] 
[2026-03-03 21:06:45] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-03 21:06:45] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-03 21:06:45] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-03 21:06:45] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-03 21:06:45] 
[2026-03-03 21:06:45] 2026-03-03 20:05:42,018 | INFO     | **************************************
[2026-03-03 21:06:45] 2026-03-03 20:05:42,520 | INFO     | executing command: df -mP /scratch/boinc/var/slot24/slots/0
[2026-03-03 21:06:45] 2026-03-03 20:05:42,536 | INFO     | sufficient remaining disk space (670496194560 B)
[2026-03-03 21:06:45] 2026-03-03 20:05:42,537 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-03 21:06:45] 2026-03-03 20:05:42,537 | INFO     | current server update state: UPDATING_FINAL
[2026-03-03 21:06:45] 2026-03-03 20:05:42,537 | INFO     | update_server=False
[2026-03-03 21:06:45] 2026-03-03 20:05:42,537 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-03 21:06:45] 2026-03-03 20:05:42,537 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-03 21:06:45] 2026-03-03 20:05:42,577 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-03 21:06:45] 2026-03-03 20:05:42,765 | INFO     | all payload control threads have been joined
[2026-03-03 21:06:45] 2026-03-03 20:05:42,894 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-03 21:06:45] 2026-03-03 20:05:42,894 | INFO     | aborting loop
[2026-03-03 21:06:45] 2026-03-03 20:05:43,542 | INFO     | [job] retrieve thread has finished
[2026-03-03 21:06:45] 2026-03-03 20:05:43,554 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-03 21:06:45] 2026-03-03 20:05:43,556 | INFO     | all data control threads have been joined
[2026-03-03 21:06:45] 2026-03-03 20:05:43,730 | INFO     | all job control threads have been joined
[2026-03-03 21:06:45] 2026-03-03 20:05:43,770 | INFO     | [payload] control thread has finished
[2026-03-03 21:06:45] 2026-03-03 20:05:43,822 | INFO     | [data] copytool_in thread has finished
[2026-03-03 21:06:45] 2026-03-03 20:05:43,899 | INFO     | [job] job monitor thread has finished
[2026-03-03 21:06:45] 2026-03-03 20:05:44,214 | INFO     | [payload] failed_post thread has finished
[2026-03-03 21:06:45] 2026-03-03 20:05:44,298 | INFO     | [payload] execute_payloads thread has finished
[2026-03-03 21:06:45] 2026-03-03 20:05:44,561 | INFO     | [data] control thread has finished
[2026-03-03 21:06:45] 2026-03-03 20:05:44,582 | INFO     | [data] copytool_out thread has finished
[2026-03-03 21:06:45] 2026-03-03 20:05:44,641 | INFO     | [payload] validate_pre thread has finished
[2026-03-03 21:06:45] 2026-03-03 20:05:44,735 | INFO     | [job] control thread has finished
[2026-03-03 21:06:45] 2026-03-03 20:05:44,750 | INFO     | [job] validate thread has finished
[2026-03-03 21:06:45] 2026-03-03 20:05:44,837 | INFO     | [job] create_data_payload thread has finished
[2026-03-03 21:06:45] 2026-03-03 20:05:44,892 | INFO     | [payload] validate_post thread has finished
[2026-03-03 21:06:45] 2026-03-03 20:05:45,488 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-03 21:06:45] 2026-03-03 20:05:46,493 | INFO     | [job] queue monitor thread has finished
[2026-03-03 21:06:45] 2026-03-03 20:05:46,543 | INFO     | [data] queue_monitor thread has finished
[2026-03-03 21:06:45] 2026-03-03 20:06:13,527 | INFO     | PID=1592869 has CPU usage=2.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-03 21:06:45] 2026-03-03 20:06:13,528 | INFO     | .. there are 12 such processes running
[2026-03-03 21:06:45] 2026-03-03 20:06:13,528 | INFO     | found 0 job(s) in 20 queues
[2026-03-03 21:06:45] 2026-03-03 20:06:13,528 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-03 21:06:45] 2026-03-03 20:06:13,528 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-03 21:06:45] 2026-03-03 20:06:39,456 | INFO     | [monitor] cgroup control has ended
[2026-03-03 21:06:45] 2026-03-03 20:06:40,067 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22561544406848)>', '<ExcThread(monitor, started 22561303041792)>']
[2026-03-03 21:06:45] 2026-03-03 20:06:40,661 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-03 21:06:45] 2026-03-03 20:06:40,661 | INFO     | [monitor] control thread has ended
[2026-03-03 21:06:45] 2026-03-03 20:06:45,093 | INFO     | all workflow threads have been joined
[2026-03-03 21:06:45] 2026-03-03 20:06:45,093 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-03 21:06:45] 2026-03-03 20:06:45,093 | INFO     | traces error code: 0
[2026-03-03 21:06:45] 2026-03-03 20:06:45,093 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-03 21:06:45] 2026-03-03 20:06:45,259 [wrapper] ==== pilot stdout END ====
[2026-03-03 21:06:45] 2026-03-03 20:06:45,262 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-03 21:06:45] 2026-03-03 20:06:45,264 [wrapper] pilotpid: 1592869
[2026-03-03 21:06:45] 2026-03-03 20:06:45,267 [wrapper] Pilot exit status: 0
[2026-03-03 21:06:45] 2026-03-03 20:06:45,276 [wrapper] pandaids: 7036184820
[2026-03-03 21:06:45] 2026-03-03 20:06:45,348 [wrapper] cleanup supervisor_pilot 1803173 1592870
[2026-03-03 21:06:45] 2026-03-03 20:06:45,351 [wrapper] Test setup, not cleaning
[2026-03-03 21:06:45] 2026-03-03 20:06:45,353 [wrapper] apfmon messages muted
[2026-03-03 21:06:45] 2026-03-03 20:06:45,356 [wrapper] ==== wrapper stdout END ====
[2026-03-03 21:06:45] 2026-03-03 20:06:45,358 [wrapper] ==== wrapper stderr END ====
[2026-03-03 21:06:45]  *** Error codes and diagnostics ***
[2026-03-03 21:06:45]     "exeErrorCode": 0,
[2026-03-03 21:06:45]     "exeErrorDiag": "",
[2026-03-03 21:06:45]     "pilotErrorCode": 0,
[2026-03-03 21:06:45]     "pilotErrorDiag": "",
[2026-03-03 21:06:45]  *** Listing of results directory ***
[2026-03-03 21:06:45] total 513060
[2026-03-03 21:06:45] -rw-r--r-- 1 boinc boinc    584627 Mar  3 05:44 pilot3.tar.gz
[2026-03-03 21:06:45] -rwx------ 1 boinc boinc     36322 Mar  3 05:45 runpilot2-wrapper.sh
[2026-03-03 21:06:45] -rw-r--r-- 1 boinc boinc      5111 Mar  3 05:45 queuedata.json
[2026-03-03 21:06:45] -rw-r--r-- 1 boinc boinc       100 Mar  3 17:12 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-03 21:06:45] -rwxr-xr-x 1 boinc boinc      7986 Mar  3 17:12 run_atlas
[2026-03-03 21:06:45] -rw-r--r-- 1 boinc boinc       105 Mar  3 17:12 job.xml
[2026-03-03 21:06:45] -rw-r--r-- 1 boinc boinc      6638 Mar  3 17:12 init_data.xml
[2026-03-03 21:06:45] -rw-r--r-- 2 boinc boinc 289212756 Mar  3 17:12 EVNT.48220197._000119.pool.root.1
[2026-03-03 21:06:45] -rw-r--r-- 2 boinc boinc     15845 Mar  3 17:12 start_atlas.sh
[2026-03-03 21:06:45] drwxrwx--x 2 boinc boinc      4096 Mar  3 17:12 shared
[2026-03-03 21:06:45] -rw-r--r-- 2 boinc boinc    597966 Mar  3 17:12 input.tar.gz
[2026-03-03 21:06:45] -rw-r--r-- 1 boinc boinc         0 Mar  3 17:12 boinc_lockfile
[2026-03-03 21:06:45] -rw-r--r-- 1 boinc boinc      2567 Mar  3 17:12 pandaJob.out
[2026-03-03 21:06:45] -rw------- 1 boinc boinc    998508 Mar  3 17:13 agis_schedconf.cvmfs.json
[2026-03-03 21:06:45] -rw------- 1 boinc boinc       447 Mar  3 17:13 workernode_map.json
[2026-03-03 21:06:45] drwx------ 5 boinc boinc      4096 Mar  3 17:13 pilot3
[2026-03-03 21:06:45] -rw------- 1 boinc boinc 227488320 Mar  3 21:04 HITS.48838577._003097.pool.root.1
[2026-03-03 21:06:45] -rw-r--r-- 1 boinc boinc       531 Mar  3 21:04 boinc_task_state.xml
[2026-03-03 21:06:45] -rw------- 1 boinc boinc        95 Mar  3 21:05 pilot_heartbeat.json
[2026-03-03 21:06:45] -rw------- 1 boinc boinc      1044 Mar  3 21:05 memory_monitor_summary.json
[2026-03-03 21:06:45] -rw------- 1 boinc boinc   1516092 Mar  3 21:05 agis_ddmendpoints.agis.ALL.json
[2026-03-03 21:06:45] -rw------- 1 boinc boinc    399464 Mar  3 21:05 log.48838577._003097.job.log.tgz.1
[2026-03-03 21:06:45] -rw------- 1 boinc boinc      6397 Mar  3 21:05 heartbeat.json
[2026-03-03 21:06:45] -rw-r--r-- 1 boinc boinc      8192 Mar  3 21:06 boinc_mmap_file
[2026-03-03 21:06:45] -rw-r--r-- 1 boinc boinc        28 Mar  3 21:06 wrapper_checkpoint.txt
[2026-03-03 21:06:45] -rw------- 1 boinc boinc      4830 Mar  3 21:06 pilotlog.txt
[2026-03-03 21:06:45] -rw------- 1 boinc boinc   1967913 Mar  3 21:06 log.48838577._003097.job.log.1
[2026-03-03 21:06:45] -rw------- 1 boinc boinc       357 Mar  3 21:06 output.list
[2026-03-03 21:06:45] -rw-r--r-- 1 boinc boinc       620 Mar  3 21:06 runtime_log
[2026-03-03 21:06:45] -rw------- 1 boinc boinc   2385920 Mar  3 21:06 result.tar.gz
[2026-03-03 21:06:45] -rw-r--r-- 1 boinc boinc      9205 Mar  3 21:06 runtime_log.err
[2026-03-03 21:06:45] -rw------- 1 boinc boinc       665 Mar  3 21:06 k5xLDmioWH9n9Rq4apOajLDm4fhM0noT9bVooX4SDmFVDLDmFcaKUo.diag
[2026-03-03 21:06:45] -rw-r--r-- 1 boinc boinc     20969 Mar  3 21:06 stderr.txt
[2026-03-03 21:06:45] HITS file was successfully produced:
[2026-03-03 21:06:45] -rw------- 1 boinc boinc 227488320 Mar  3 21:04 shared/HITS.pool.root.1
[2026-03-03 21:06:45]  *** Contents of shared directory: ***
[2026-03-03 21:06:45] total 507536
[2026-03-03 21:06:45] -rw-r--r-- 2 boinc boinc 289212756 Mar  3 17:12 ATLAS.root_0
[2026-03-03 21:06:45] -rw-r--r-- 2 boinc boinc     15845 Mar  3 17:12 start_atlas.sh
[2026-03-03 21:06:45] -rw-r--r-- 2 boinc boinc    597966 Mar  3 17:12 input.tar.gz
[2026-03-03 21:06:45] -rw------- 1 boinc boinc 227488320 Mar  3 21:04 HITS.pool.root.1
[2026-03-03 21:06:45] -rw------- 1 boinc boinc   2385920 Mar  3 21:06 result.tar.gz
21:06:47 (1588683): run_atlas exited; CPU time 54257.627789
21:06:47 (1588683): called boinc_finish(0)

</stderr_txt>
]]>

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