Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
2026-03-05 18:30:42 (27900): vboxwrapper version 26210
2026-03-05 18:30:42 (27900): BOINC client version: 8.2.8
2026-03-05 18:30:43 (27900): Detected: VirtualBox VboxManage Interface (Version: 7.2.0)
2026-03-05 18:30:44 (27900): Successfully copied 'init_data.xml' to the shared directory.
2026-03-05 18:30:44 (27900): Create VM. (boinc_7273666dd6746490, slot#0)
2026-03-05 18:30:45 (27900): Setting Memory Size for VM. (4100MB)
2026-03-05 18:30:45 (27900): Setting CPU Count for VM. (1)
2026-03-05 18:30:45 (27900): Setting Chipset Options for VM.
2026-03-05 18:30:45 (27900): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2026-03-05 18:30:46 (27900): Setting Boot Options for VM.
2026-03-05 18:30:46 (27900): Setting Network Configuration for NAT. (Driver: virtio)
2026-03-05 18:30:46 (27900): Enabling VM Network Access.
2026-03-05 18:30:47 (27900): Disabling USB Support for VM.
2026-03-05 18:30:47 (27900): Disabling COM Port Support for VM.
2026-03-05 18:30:47 (27900): Disabling LPT Port Support for VM.
2026-03-05 18:30:47 (27900): Disabling Audio Support for VM.
2026-03-05 18:30:48 (27900): Disabling Clipboard Support for VM.
2026-03-05 18:30:48 (27900): Disabling Drag and Drop Support for VM.
2026-03-05 18:30:48 (27900): Adding storage controller(s) to VM.
2026-03-05 18:30:49 (27900): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2026-03-05 18:30:51 (27900): Attempts: 2
2026-03-05 18:30:52 (27900): Adding VirtualBox Guest Additions to VM.
2026-03-05 18:30:52 (27900): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2026-03-05 18:30:52 (27900): forwarding host port 50782 to guest port 80
2026-03-05 18:30:53 (27900): Enabling remote desktop for VM.
2026-03-05 18:30:53 (27900): Required extension pack not installed, remote desktop not enabled.
2026-03-05 18:30:53 (27900): Enabling shared directory for VM.
2026-03-05 18:30:53 (27900): Starting VM using VBoxManage interface. (boinc_7273666dd6746490, slot#0)
2026-03-05 18:31:00 (27900): Successfully started VM. (PID = '26724')
2026-03-05 18:31:00 (27900): Reporting VM Process ID to BOINC.
2026-03-05 18:31:00 (27900): Guest Log: BIOS: VirtualBox 7.2.0
2026-03-05 18:31:00 (27900): Guest Log: CPUID EDX: 0x178bfbff
2026-03-05 18:31:00 (27900): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2026-03-05 18:31:00 (27900): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2026-03-05 18:31:00 (27900): VM state change detected. (old = 'poweredoff', new = 'running')
2026-03-05 18:31:00 (27900): Detected: Web Application Enabled (http://localhost:50782)
2026-03-05 18:31:00 (27900): Preference change detected
2026-03-05 18:31:00 (27900): Setting CPU throttle for VM. (100%)
2026-03-05 18:31:00 (27900): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2026-03-05 18:31:02 (27900): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2026-03-05 18:31:02 (27900): Guest Log: BIOS: Booting from Hard Disk...
2026-03-05 18:31:05 (27900): Guest Log: BIOS: KBD: unsupported int 16h function 03
2026-03-05 18:31:05 (27900): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2026-03-05 18:31:05 (27900): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2026-03-05 18:31:05 (27900): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2026-03-05 18:31:05 (27900): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2026-03-05 18:31:05 (27900): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2026-03-05 18:31:05 (27900): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2026-03-05 18:31:05 (27900): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2026-03-05 18:31:05 (27900): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2026-03-05 18:31:05 (27900): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2026-03-05 18:31:05 (27900): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2026-03-05 18:31:05 (27900): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2026-03-05 18:31:05 (27900): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2026-03-05 18:31:05 (27900): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2026-03-05 18:31:05 (27900): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2026-03-05 18:31:05 (27900): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2026-03-05 18:31:05 (27900): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2026-03-05 18:31:05 (27900): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2026-03-05 18:31:05 (27900): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2026-03-05 18:31:05 (27900): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2026-03-05 18:31:05 (27900): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2026-03-05 18:31:05 (27900): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2026-03-05 18:31:05 (27900): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2026-03-05 18:31:05 (27900): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2026-03-05 18:31:05 (27900): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2026-03-05 18:31:05 (27900): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2026-03-05 18:31:05 (27900): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2026-03-05 18:31:05 (27900): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2026-03-05 18:31:05 (27900): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2026-03-05 18:31:05 (27900): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2026-03-05 18:31:05 (27900): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2026-03-05 18:31:05 (27900): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2026-03-05 18:31:12 (27900): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2026-03-05 18:31:12 (27900): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2026-03-05 18:31:28 (27900): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2026-03-05 18:31:28 (27900): Guest Log: 00:00:00.000197 main     Log opened 2026-03-05T18:31:26.750045000Z
2026-03-05 18:31:28 (27900): Guest Log: 00:00:00.000346 main     OS Product: Linux
2026-03-05 18:31:28 (27900): Guest Log: 00:00:00.000396 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2026-03-05 18:31:28 (27900): Guest Log: 00:00:00.000435 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2026-03-05 18:31:28 (27900): Guest Log: 00:00:00.000474 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2026-03-05 18:31:28 (27900): Guest Log: 00:00:00.000476 main     Process ID: 1258
2026-03-05 18:31:28 (27900): Guest Log: 00:00:00.000477 main     Package type: LINUX_64BITS_GENERIC
2026-03-05 18:31:28 (27900): Guest Log: 00:00:00.012209 main     5.2.32 r132073 started. Verbose level = 0
2026-03-05 18:31:28 (27900): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2026-03-05 18:31:28 (27900): Guest Log: [INFO] Mounting shared directory
2026-03-05 18:31:28 (27900): Guest Log: [INFO] Checking for init_data.xml
2026-03-05 18:31:38 (27900): Guest Log: 00:00:10.035900 timesync vgsvcTimeSyncWorker: Radical guest time change: -3 588 944 293 000ns (GuestNow=1 772 731 897 839 706 000 ns GuestLast=1 772 735 486 783 999 000 ns fSetTimeLastLoop=true )
2026-03-05 18:32:29 (27900): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2026-03-05 18:32:29 (27900): Guest Log: [INFO] Detected branch: prod
2026-03-05 18:32:29 (27900): Guest Log: This is the prod version of the ATLAS job wrapper
2026-03-05 18:32:29 (27900): Guest Log: Copying input files
2026-03-05 18:32:32 (27900): Guest Log: Copied input files into RunAtlas.
2026-03-05 18:32:32 (27900): Guest Log: This VM did not configure a local http proxy via BOINC.
2026-03-05 18:32:32 (27900): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2026-03-05 18:32:32 (27900): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2026-03-05 18:32:32 (27900): Guest Log: Further information can be found at the LHC@home message board.
2026-03-05 18:32:41 (27900): Guest Log: Running cvmfs_config stat atlas.cern.ch
2026-03-05 18:32:42 (27900): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2026-03-05 18:32:42 (27900): Guest Log: 2.6.3.0 1550 0 32116 156928 4 1 3117743 4096001 0 65024 0 0 n/a 0 0 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2026-03-05 18:32:43 (27900): Guest Log: copied the webapp to /var/www
2026-03-05 18:32:43 (27900): Guest Log: core_number=1
2026-03-05 18:32:43 (27900): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2026-03-05 18:32:43 (27900): Guest Log:  *** Starting ATLAS job. (PandaID=7036184512 taskID=48838577) ***
2026-03-05 20:11:33 (27900): Status Report: Elapsed Time: '6000.000000'
2026-03-05 20:11:33 (27900): Status Report: CPU Time: '5874.750000'
2026-03-05 21:51:46 (27900): Status Report: Elapsed Time: '12000.000000'
2026-03-05 21:51:46 (27900): Status Report: CPU Time: '11867.750000'
2026-03-05 23:32:00 (27900): Status Report: Elapsed Time: '18000.000000'
2026-03-05 23:32:00 (27900): Status Report: CPU Time: '17859.875000'
2026-03-06 01:12:05 (27900): Status Report: Elapsed Time: '24000.000000'
2026-03-06 01:12:05 (27900): Status Report: CPU Time: '23848.828125'
2026-03-06 02:52:12 (27900): Status Report: Elapsed Time: '30000.783377'
2026-03-06 02:52:12 (27900): Status Report: CPU Time: '29836.453125'
2026-03-06 04:32:18 (27900): Status Report: Elapsed Time: '36000.783377'
2026-03-06 04:32:18 (27900): Status Report: CPU Time: '35825.734375'
2026-03-06 06:12:25 (27900): Status Report: Elapsed Time: '42000.783377'
2026-03-06 06:12:25 (27900): Status Report: CPU Time: '41811.578125'
2026-03-06 07:53:02 (27900): Status Report: Elapsed Time: '48000.783377'
2026-03-06 07:53:02 (27900): Status Report: CPU Time: '47823.078125'
2026-03-06 09:34:09 (27900): Status Report: Elapsed Time: '54001.025517'
2026-03-06 09:34:09 (27900): Status Report: CPU Time: '53807.718750'
2026-03-06 11:14:33 (27900): Status Report: Elapsed Time: '60001.025517'
2026-03-06 11:14:33 (27900): Status Report: CPU Time: '59718.109375'
2026-03-06 12:54:54 (27900): Status Report: Elapsed Time: '66001.025517'
2026-03-06 12:54:54 (27900): Status Report: CPU Time: '65628.437500'
2026-03-06 14:35:16 (27900): Status Report: Elapsed Time: '72001.025517'
2026-03-06 14:35:16 (27900): Status Report: CPU Time: '71540.984375'
2026-03-06 16:15:44 (27900): Status Report: Elapsed Time: '78001.025517'
2026-03-06 16:15:44 (27900): Status Report: CPU Time: '77458.406250'
2026-03-06 16:42:10 (27900): Guest Log:  *** Job finished ***
2026-03-06 16:42:10 (27900): Guest Log:  *** The last 20 lines of the pilot log: ***
2026-03-06 16:42:10 (27900): Guest Log: 2026-03-06 15:42:02,452 | INFO     | found 0 job(s) in 20 queues
2026-03-06 16:42:10 (27900): Guest Log: 2026-03-06 15:42:02,454 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2026-03-06 16:42:10 (27900): Guest Log: 2026-03-06 15:42:02,454 | WARNING  | will wait for a maximum of 300 s for threads to finish
2026-03-06 16:42:10 (27900): Guest Log: 2026-03-06 15:42:03,591 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140413247567680)>', '<ExcThread(monitor, started 140412664665856)>']
2026-03-06 16:42:10 (27900): Guest Log: 2026-03-06 15:42:04,458 | WARNING  | job_aborted has been set - aborting pilot monitoring
2026-03-06 16:42:10 (27900): Guest Log: 2026-03-06 15:42:04,460 | INFO     | [monitor] control thread has ended
2026-03-06 16:42:10 (27900): Guest Log: 2026-03-06 15:42:08,601 | INFO     | all workflow threads have been joined
2026-03-06 16:42:10 (27900): Guest Log: 2026-03-06 15:42:08,601 | INFO     | end of generic workflow (traces error code: 0)
2026-03-06 16:42:10 (27900): Guest Log: 2026-03-06 15:42:08,601 | INFO     | traces error code: 0
2026-03-06 16:42:10 (27900): Guest Log: 2026-03-06 15:42:08,601 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2026-03-06 16:42:10 (27900): Guest Log: 2026-03-06 15:42:09,125 [wrapper] ==== pilot stdout END ====
2026-03-06 16:42:10 (27900): Guest Log: 2026-03-06 15:42:09,136 [wrapper] ==== wrapper stdout RESUME ====
2026-03-06 16:42:10 (27900): Guest Log: 2026-03-06 15:42:09,147 [wrapper] pilotpid: 5895
2026-03-06 16:42:10 (27900): Guest Log: 2026-03-06 15:42:09,162 [wrapper] Pilot exit status: 0
2026-03-06 16:42:10 (27900): Guest Log: 2026-03-06 15:42:09,292 [wrapper] pandaids: 7036184512
2026-03-06 16:42:10 (27900): Guest Log: 2026-03-06 15:42:09,488 [wrapper] cleanup supervisor_pilot 14921 5896
2026-03-06 16:42:10 (27900): Guest Log: 2026-03-06 15:42:09,504 [wrapper] Test setup, not cleaning
2026-03-06 16:42:10 (27900): Guest Log: 2026-03-06 15:42:09,521 [wrapper] apfmon messages muted
2026-03-06 16:42:10 (27900): Guest Log: 2026-03-06 15:42:09,536 [wrapper] ==== wrapper stdout END ====
2026-03-06 16:42:10 (27900): Guest Log: 2026-03-06 15:42:09,553 [wrapper] ==== wrapper stderr END ====
2026-03-06 16:42:10 (27900): Guest Log:  *** Error codes and diagnostics ***
2026-03-06 16:42:10 (27900): Guest Log:     "exeErrorCode": 0,
2026-03-06 16:42:10 (27900): Guest Log:     "exeErrorDiag": "",
2026-03-06 16:42:10 (27900): Guest Log:     "pilotErrorCode": 0,
2026-03-06 16:42:10 (27900): Guest Log:     "pilotErrorDiag": "",
2026-03-06 16:42:10 (27900): Guest Log:  *** Listing of results directory ***
2026-03-06 16:42:11 (27900): Guest Log: total 240768
2026-03-06 16:42:11 (27900): Guest Log: -rw-r--r--. 1 atlas atlas    584627 Mar  3 04:44 pilot3.tar.gz
2026-03-06 16:42:11 (27900): Guest Log: -rw-r--r--. 1 atlas atlas      5111 Mar  3 04:44 queuedata.json
2026-03-06 16:42:11 (27900): Guest Log: -rwx------. 1 atlas atlas     36322 Mar  3 04:44 runpilot2-wrapper.sh
2026-03-06 16:42:11 (27900): Guest Log: -rwxr-xr-x. 1 atlas atlas      8962 Mar  5 17:32 init_data.xml
2026-03-06 16:42:11 (27900): Guest Log: -rwxr-xr-x. 1 atlas atlas    597973 Mar  5 17:32 input.tar.gz
2026-03-06 16:42:11 (27900): Guest Log: -rwxr-xr-x. 1 atlas atlas     15845 Mar  5 17:32 start_atlas.sh
2026-03-06 16:42:11 (27900): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Mar  5 17:32 EVNT.48220197._000111.pool.root.1 -> /data/./ATLAS.root_0
2026-03-06 16:42:11 (27900): Guest Log: -rw-r--r--. 1 atlas atlas      2564 Mar  5 17:32 pandaJob.out
2026-03-06 16:42:11 (27900): Guest Log: -rw-------. 1 atlas atlas    998462 Mar  5 17:33 agis_schedconf.cvmfs.json
2026-03-06 16:42:11 (27900): Guest Log: -rw-------. 1 atlas atlas       425 Mar  5 17:33 workernode_map.json
2026-03-06 16:42:11 (27900): Guest Log: drwx------. 5 atlas atlas      4096 Mar  5 17:33 pilot3
2026-03-06 16:42:11 (27900): Guest Log: -rw-------. 1 atlas atlas 218589375 Mar  6 15:40 HITS.48838577._002885.pool.root.1
2026-03-06 16:42:11 (27900): Guest Log: -rw-------. 1 atlas atlas      1025 Mar  6 15:41 memory_monitor_summary.json
2026-03-06 16:42:11 (27900): Guest Log: -rw-------. 1 atlas atlas   1521291 Mar  6 15:41 agis_ddmendpoints.agis.ALL.json
2026-03-06 16:42:11 (27900): Guest Log: -rw-------. 1 atlas atlas   1224095 Mar  6 15:41 log.48838577._002885.job.log.tgz.1
2026-03-06 16:42:11 (27900): Guest Log: -rw-------. 1 atlas atlas      6364 Mar  6 15:41 heartbeat.json
2026-03-06 16:42:11 (27900): Guest Log: -rw-------. 1 atlas atlas        95 Mar  6 15:42 pilot_heartbeat.json
2026-03-06 16:42:11 (27900): Guest Log: -rw-------. 1 atlas atlas      4801 Mar  6 15:42 pilotlog.txt
2026-03-06 16:42:11 (27900): Guest Log: -rw-------. 1 atlas atlas  10821491 Mar  6 15:42 log.48838577._002885.job.log.1
2026-03-06 16:42:11 (27900): Guest Log: -rw-------. 1 atlas atlas       357 Mar  6 15:42 output.list
2026-03-06 16:42:11 (27900): Guest Log: -rw-r--r--. 1 atlas atlas       620 Mar  6 15:42 runtime_log
2026-03-06 16:42:11 (27900): Guest Log: -rw-------. 1 atlas atlas  12062720 Mar  6 15:42 result.tar.gz
2026-03-06 16:42:11 (27900): Guest Log: -rw-r--r--. 1 atlas atlas      8622 Mar  6 15:42 runtime_log.err
2026-03-06 16:42:11 (27900): Guest Log: -rw-------. 1 atlas atlas       654 Mar  6 15:42 gUDMDmfnWH9n9Rq4apOajLDm4fhM0noT9bVooX4SDmjUDLDmOQjLMm.diag
2026-03-06 16:42:11 (27900): Guest Log: Looking for outputfile HITS.48838577._002885.pool.root.1
2026-03-06 16:42:11 (27900): Guest Log: HITS file was successfully produced
2026-03-06 16:42:11 (27900): Guest Log: -rw-------. 1 atlas atlas 218589375 Mar  6 15:40 /home/atlas/RunAtlas/HITS.48838577._002885.pool.root.1
2026-03-06 16:42:17 (27900): Guest Log: Successfully finished the ATLAS job!
2026-03-06 16:42:17 (27900): Guest Log: Copying the results back to the shared directory!
2026-03-06 16:42:17 (27900): Guest Log:  *** Contents of shared directory: ***
2026-03-06 16:42:18 (27900): Guest Log: total 513232
2026-03-06 16:42:18 (27900): Guest Log: -rwxrwxrwx. 1 root root 294267034 Mar  5 17:30 ATLAS.root_0
2026-03-06 16:42:18 (27900): Guest Log: -rwxrwxrwx. 1 root root 218589375 Mar  6 15:42 HITS.pool.root.1
2026-03-06 16:42:18 (27900): Guest Log: -rwxrwxrwx. 1 root root      8962 Mar  5 17:30 init_data.xml
2026-03-06 16:42:18 (27900): Guest Log: -rwxrwxrwx. 1 root root    597973 Mar  3 07:07 input.tar.gz
2026-03-06 16:42:18 (27900): Guest Log: -rwxrwxrwx. 1 root root  12062720 Mar  6 15:42 result.tar.gz
2026-03-06 16:42:18 (27900): Guest Log: -rwxrwxrwx. 1 root root     15845 Mar  3 07:07 start_atlas.sh
2026-03-06 16:42:18 (27900): Guest Log:  *** Success! Shutting down the machine. ***
2026-03-06 16:42:18 (27900): VM Completion File Detected.
2026-03-06 16:42:18 (27900): Powering off VM.
2026-03-06 16:42:21 (27900): Successfully stopped VM.
2026-03-06 16:42:21 (27900): Deregistering VM. (boinc_7273666dd6746490, slot#0)
2026-03-06 16:42:21 (27900): Removing network bandwidth throttle group from VM.
2026-03-06 16:42:21 (27900): Removing VM from VirtualBox.
2026-03-06 16:42:27 (27900): called boinc_finish(0)

</stderr_txt>
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