Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
20:23:27 (14284): wrapper (7.7.26015): starting
20:23:27 (14284): wrapper: running run_atlas (--nthreads 4)
[2026-03-03 20:23:27] Arguments: --nthreads 4
[2026-03-03 20:23:27] Threads: 4
[2026-03-03 20:23:27] Checking for CVMFS
[2026-03-03 20:23:27] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-03 20:23:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-03 20:23:27] Running cvmfs_config stat atlas.cern.ch
[2026-03-03 20:23:27] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-03 20:23:27] 2.9.2.0 3017 13 49956 156855 2 7 33478931 36864001 828 130560 0 33032 99.947 4245 29685 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-03 20:23:27] CVMFS is ok
[2026-03-03 20:23:27] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-03 20:23:27] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-03 20:23:27] Further information can be found at the LHC@home message board.
[2026-03-03 20:23:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-03 20:23:27] Checking for apptainer binary...
[2026-03-03 20:23:27] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-03 20:23:27] Running /usr/bin/apptainer --version
[2026-03-03 20:23:27] apptainer version 1.4.1-1.1
[2026-03-03 20:23:27] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-03 20:23:27] thA373a
[2026-03-03 20:23:27] apptainer works
[2026-03-03 20:23:28] Set ATHENA_PROC_NUMBER=4
[2026-03-03 20:23:28] Set ATHENA_CORE_NUMBER=4
[2026-03-03 20:23:28] Starting ATLAS job with PandaID=7036134367
[2026-03-03 20:23:28] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-03 20:30:45]  *** The last 200 lines of the pilot log: ***
[2026-03-03 20:30:45] 2026-03-03 19:30:05,963 | INFO     | [payload] validate_pre thread has finished
[2026-03-03 20:30:45] 2026-03-03 19:30:06,073 | INFO     | [job] job monitor thread has finished
[2026-03-03 20:30:45] 2026-03-03 19:30:06,087 | INFO     | [data] copytool_in thread has finished
[2026-03-03 20:30:45] 2026-03-03 19:30:06,240 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-03 20:30:45] 2026-03-03 19:30:06,320 | INFO     | [data] control thread has finished
[2026-03-03 20:30:45] 2026-03-03 19:30:06,449 | INFO     | [payload] control thread has finished
[2026-03-03 20:30:45] 2026-03-03 19:30:06,455 | INFO     | [payload] failed_post thread has finished
[2026-03-03 20:30:45] 2026-03-03 19:30:06,485 | INFO     | [payload] execute_payloads thread has finished
[2026-03-03 20:30:45] 2026-03-03 19:30:06,759 | INFO     | [job] control thread has finished
[2026-03-03 20:30:45] 2026-03-03 19:30:06,862 | INFO     | [payload] validate_post thread has finished
[2026-03-03 20:30:45] 2026-03-03 19:30:07,128 | INFO     | [data] copytool_out thread has finished
[2026-03-03 20:30:45] 2026-03-03 19:30:07,286 | INFO     | [job] validate thread has finished
[2026-03-03 20:30:45] 2026-03-03 19:30:07,839 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-03 20:30:45] 2026-03-03 19:30:08,844 | INFO     | [job] queue monitor thread has finished
[2026-03-03 20:30:45] 2026-03-03 19:30:10,247 | INFO     | [data] queue_monitor thread has finished
[2026-03-03 20:30:45] 2026-03-03 19:30:35,462 | INFO     | PID=18424 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-03-03 20:30:45] 2026-03-03 19:30:35,462 | INFO     | found 0 job(s) in 20 queues
[2026-03-03 20:30:45] 2026-03-03 19:30:35,462 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-03 20:30:45] 2026-03-03 19:30:35,462 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-03 20:30:45] 2026-03-03 19:30:39,854 | INFO     | [monitor] cgroup control has ended
[2026-03-03 20:30:45] 2026-03-03 19:30:40,777 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140714822514496)>', '<ExcThread(monitor, started 140714042181376)>']
[2026-03-03 20:30:45] 2026-03-03 19:30:41,494 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-03 20:30:45] 2026-03-03 19:30:41,495 | INFO     | [monitor] control thread has ended
[2026-03-03 20:30:45] 2026-03-03 19:30:45,803 | INFO     | all workflow threads have been joined
[2026-03-03 20:30:45] 2026-03-03 19:30:45,803 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-03 20:30:45] 2026-03-03 19:30:45,803 | INFO     | traces error code: 0
[2026-03-03 20:30:45] 2026-03-03 19:30:45,803 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-03 20:30:45] 2026-03-03 19:30:45,874 [wrapper] ==== pilot stdout END ====
[2026-03-03 20:30:45] 2026-03-03 19:30:45,878 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-03 20:30:45] 2026-03-03 19:30:45,882 [wrapper] pilotpid: 18424
[2026-03-03 20:30:45] 2026-03-03 19:30:45,885 [wrapper] Pilot exit status: 0
[2026-03-03 20:30:45] 2026-03-03 19:30:45,896 [wrapper] pandaids: 7036134367
[2026-03-03 20:30:45] 2026-03-03 19:30:45,917 [wrapper] cleanup supervisor_pilot   18430 18425
[2026-03-03 20:30:45] 2026-03-03 19:30:45,920 [wrapper] Test setup, not cleaning
[2026-03-03 20:30:45] 2026-03-03 19:30:45,924 [wrapper] apfmon messages muted
[2026-03-03 20:30:45] 2026-03-03 19:30:45,927 [wrapper] ==== wrapper stdout END ====
[2026-03-03 20:30:45] 2026-03-03 19:30:45,931 [wrapper] ==== wrapper stderr END ====
[2026-03-03 20:30:45]  *** Error codes and diagnostics ***
[2026-03-03 20:30:45]     "exeErrorCode": 65,
[2026-03-03 20:30:45]     "exeErrorDiag": "EVNTtoHITS got a SIGILL signal (exit code 132); Logfile error in log.EVNTtoHITS: \"CoreDumpSvc   FATAL Caught fatal signal. Printing details to stdout.\"; Possible memory leak: 'pss' slope: 7352.61 KB/s",
[2026-03-03 20:30:45]     "pilotErrorCode": 1305,
[2026-03-03 20:30:45]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: EVNTtoHITS got a SIGILL signal (exit code 132); Logfile error in log.EVNTtoHITS: \"CoreDumpSvc   FATAL Caught fatal signal. Printing details to stdout.\"; Possib",
[2026-03-03 20:30:45]  *** Listing of results directory ***
[2026-03-03 20:30:45] total 282112
[2026-03-03 20:30:45] -rw-r--r-- 1 boinc boinc    584627 Mar  3 00:56 pilot3.tar.gz
[2026-03-03 20:30:45] -rwx------ 1 boinc boinc     36322 Mar  3 01:00 runpilot2-wrapper.sh
[2026-03-03 20:30:45] -rw-r--r-- 1 boinc boinc      5111 Mar  3 01:02 queuedata.json
[2026-03-03 20:30:45] -rw-r--r-- 1 boinc boinc       100 Mar  3 20:23 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-03 20:30:45] -rwxr-xr-x 1 boinc boinc      7986 Mar  3 20:23 run_atlas
[2026-03-03 20:30:45] -rw-r--r-- 1 boinc boinc       105 Mar  3 20:23 job.xml
[2026-03-03 20:30:45] -rw-r--r-- 2 boinc boinc 284574874 Mar  3 20:23 EVNT.48220205._000182.pool.root.1
[2026-03-03 20:30:45] drwxrwx--x 2 boinc boinc      4096 Mar  3 20:23 shared
[2026-03-03 20:30:45] -rw-r--r-- 2 boinc boinc    597969 Mar  3 20:23 input.tar.gz
[2026-03-03 20:30:45] -rw-r--r-- 2 boinc boinc     15845 Mar  3 20:23 start_atlas.sh
[2026-03-03 20:30:45] -rw-r--r-- 1 boinc boinc         0 Mar  3 20:23 boinc_setup_complete
[2026-03-03 20:30:45] -rw-r--r-- 1 boinc boinc      6213 Mar  3 20:23 init_data.xml
[2026-03-03 20:30:45] -rw-r--r-- 1 boinc boinc         0 Mar  3 20:23 boinc_lockfile
[2026-03-03 20:30:45] -rw-r--r-- 1 boinc boinc      2588 Mar  3 20:23 pandaJob.out
[2026-03-03 20:30:45] -rw------- 1 boinc boinc    998476 Mar  3 20:23 agis_schedconf.cvmfs.json
[2026-03-03 20:30:45] -rw------- 1 boinc boinc   1516092 Mar  3 20:23 agis_ddmendpoints.agis.ALL.json
[2026-03-03 20:30:45] -rw------- 1 boinc boinc       428 Mar  3 20:23 workernode_map.json
[2026-03-03 20:30:45] drwx------ 5 boinc boinc      4096 Mar  3 20:23 pilot3
[2026-03-03 20:30:45] -rw------- 1 boinc boinc      1000 Mar  3 20:28 memory_monitor_summary.json
[2026-03-03 20:30:45] -rw------- 1 boinc boinc     82295 Mar  3 20:28 log.48838581._004402.job.log.tgz.1
[2026-03-03 20:30:45] -rw-r--r-- 1 boinc boinc       525 Mar  3 20:28 boinc_task_state.xml
[2026-03-03 20:30:45] -rw------- 1 boinc boinc        95 Mar  3 20:29 pilot_heartbeat.json
[2026-03-03 20:30:45] -rw------- 1 boinc boinc      8167 Mar  3 20:30 heartbeat.json
[2026-03-03 20:30:45] -rw-r--r-- 1 boinc boinc      8192 Mar  3 20:30 boinc_mmap_file
[2026-03-03 20:30:45] -rw-r--r-- 1 boinc boinc        23 Mar  3 20:30 wrapper_checkpoint.txt
[2026-03-03 20:30:45] -rw------- 1 boinc boinc      4746 Mar  3 20:30 pilotlog.txt
[2026-03-03 20:30:45] -rw------- 1 boinc boinc    110816 Mar  3 20:30 log.48838581._004402.job.log.1
[2026-03-03 20:30:45] -rw------- 1 boinc boinc       188 Mar  3 20:30 output.list
[2026-03-03 20:30:45] -rw-r--r-- 1 boinc boinc       620 Mar  3 20:30 runtime_log
[2026-03-03 20:30:45] -rw------- 1 boinc boinc    215040 Mar  3 20:30 result.tar.gz
[2026-03-03 20:30:45] -rw-r--r-- 1 boinc boinc      8748 Mar  3 20:30 runtime_log.err
[2026-03-03 20:30:45] -rw------- 1 boinc boinc       651 Mar  3 20:30 FFlKDmRMSH9n9Rq4apOajLDm4fhM0noT9bVooX4SDmW8CLDmLxk7Yn.diag
[2026-03-03 20:30:45] -rw-r--r-- 1 boinc boinc      6736 Mar  3 20:30 stderr.txt
[2026-03-03 20:30:45] No HITS result produced
[2026-03-03 20:30:45]  *** Contents of shared directory: ***
[2026-03-03 20:30:45] total 278724
[2026-03-03 20:30:45] -rw-r--r-- 2 boinc boinc 284574874 Mar  3 20:23 ATLAS.root_0
[2026-03-03 20:30:45] -rw-r--r-- 2 boinc boinc    597969 Mar  3 20:23 input.tar.gz
[2026-03-03 20:30:45] -rw-r--r-- 2 boinc boinc     15845 Mar  3 20:23 start_atlas.sh
[2026-03-03 20:30:45] -rw------- 1 boinc boinc    215040 Mar  3 20:30 result.tar.gz
20:30:47 (14284): run_atlas exited; CPU time 118.691202
20:30:47 (14284): called boinc_finish(0)

</stderr_txt>
]]>

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