Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
09:49:52 (1672521): wrapper (7.7.26015): starting
09:49:52 (1672521): wrapper: running run_atlas (--nthreads 12)
[2026-03-03 09:49:52] Arguments: --nthreads 12
[2026-03-03 09:49:52] Threads: 12
[2026-03-03 09:49:52] Checking for CVMFS
[2026-03-03 09:49:52] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-03 09:49:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-03 09:49:52] Running cvmfs_config stat atlas.cern.ch
[2026-03-03 09:49:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-03 09:49:52] 2.13.3.0 2136 2664 51304 156852 1 188 2932252 4096001 918 130560 0 5037970 99.992 232166 1206 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2026-03-03 09:49:52] CVMFS is ok
[2026-03-03 09:49:52] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-03 09:49:52] Small home clusters do not require a local http proxy but it is suggested if
[2026-03-03 09:49:52] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2026-03-03 09:49:52] Further information can be found at the LHC@home message board.
[2026-03-03 09:49:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-03 09:49:52] Checking for apptainer binary...
[2026-03-03 09:49:52] apptainer is not installed, using version from CVMFS
[2026-03-03 09:49:52] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-03 09:49:52] boinc
[2026-03-03 09:49:52] apptainer works
[2026-03-03 09:49:52] Set ATHENA_PROC_NUMBER=12
[2026-03-03 09:49:52] Set ATHENA_CORE_NUMBER=12
[2026-03-03 09:49:52] Starting ATLAS job with PandaID=7032232250
[2026-03-03 09:49:52] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-03 10:28:25]  *** The last 200 lines of the pilot log: ***
[2026-03-03 10:28:25]  guid=a6485548-67e9-4466-b349-75c2aad4471f
[2026-03-03 10:28:25]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-03-03 10:28:25]  is_altstaged=None
[2026-03-03 10:28:25]  is_tar=False
[2026-03-03 10:28:25]  lfn=log.48838615._002129.job.log.tgz.1
[2026-03-03 10:28:25]  mtime=0
[2026-03-03 10:28:25]  protocol_id=None
[2026-03-03 10:28:25]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-03-03 10:28:25]  replicas=None
[2026-03-03 10:28:25]  scope=mc23_13p6TeV
[2026-03-03 10:28:25]  status=None
[2026-03-03 10:28:25]  status_code=0
[2026-03-03 10:28:25]  storage_token=
[2026-03-03 10:28:25]  surl=/var/lib/boinc-client/slots/0/PanDA_Pilot-7032232250/log.48838615._002129.job.log.tgz.1
[2026-03-03 10:28:25]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/31/06/log.48838615._002129.job.log.tgz.1
[2026-03-03 10:28:25]  workdir=None
[2026-03-03 10:28:25] ]
[2026-03-03 10:28:25] 2026-03-03 18:27:49,504 | INFO     | transferring file log.48838615._002129.job.log.tgz.1 from /var/lib/boinc-client/slots/0/PanDA_Pilot-7032232250/log.48838615._002129.job.log.tgz.1 to /var/lib/boinc
[2026-03-03 10:28:25] 2026-03-03 18:27:49,504 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/0/PanDA_Pilot-7032232250/log.48838615._002129.job.log.tgz.1 /var/lib/boinc-client/slots/0/log.488386
[2026-03-03 10:28:25] 2026-03-03 18:27:49,517 | INFO     | adding to output.list: log.48838615._002129.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/31/06/log.48838615._002129.job.log.tg
[2026-03-03 10:28:25] 2026-03-03 18:27:49,518 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-03 10:28:25] 2026-03-03 18:27:49,518 | INFO     | summary of transferred files:
[2026-03-03 10:28:25] 2026-03-03 18:27:49,518 | INFO     |  -- lfn=log.48838615._002129.job.log.tgz.1, status_code=0, status=transferred
[2026-03-03 10:28:25] 2026-03-03 18:27:49,518 | INFO     | stage-out finished correctly
[2026-03-03 10:28:25] 2026-03-03 18:27:50,166 | INFO     | time since job start (2263s) is within the limit (349056.0s)
[2026-03-03 10:28:25] 2026-03-03 18:27:50,613 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-03 10:28:25] 2026-03-03 18:27:51,007 | INFO     | monitor loop #178: job 0:7032232250 is in state 'finished'
[2026-03-03 10:28:25] 2026-03-03 18:27:51,007 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-03-03 10:28:25] 2026-03-03 18:27:52,170 | INFO     | time since job start (2265s) is within the limit (349056.0s)
[2026-03-03 10:28:25] 2026-03-03 18:27:53,316 | INFO     | job 7032232250 has state=finished
[2026-03-03 10:28:25] 2026-03-03 18:27:53,316 | INFO     | preparing for final server update for job 7032232250 in state='finished'
[2026-03-03 10:28:25] 2026-03-03 18:27:53,316 | INFO     | reading metadata from: /var/lib/boinc-client/slots/0/PanDA_Pilot-7032232250/jobReport.json
[2026-03-03 10:28:25] 2026-03-03 18:27:53,318 | INFO     | added worker_node to metadata from /var/lib/boinc-client/slots/0/workernode_map.json
[2026-03-03 10:28:25] 2026-03-03 18:27:53,318 | INFO     | this job has now completed (state=finished)
[2026-03-03 10:28:25] 2026-03-03 18:27:53,318 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-03 10:28:25] 2026-03-03 18:27:53,318 | INFO     | log transfer has been attempted: DONE
[2026-03-03 10:28:25] 2026-03-03 18:27:53,319 | INFO     | job 7032232250 has finished - writing final server update
[2026-03-03 10:28:25] 2026-03-03 18:27:53,319 | INFO     | total number of processed events: 400 (read)
[2026-03-03 10:28:25] 2026-03-03 18:27:53,321 | INFO     | using path: /var/lib/boinc-client/slots/0/PanDA_Pilot-7032232250/memory_monitor_summary.json (trf name=prmon)
[2026-03-03 10:28:25] 2026-03-03 18:27:53,321 | INFO     | extracted standard info from prmon json
[2026-03-03 10:28:25] 2026-03-03 18:27:53,322 | INFO     | extracted standard memory fields from prmon json
[2026-03-03 10:28:25] 2026-03-03 18:27:53,322 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-03 10:28:25] 2026-03-03 18:27:53,322 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-03 10:28:25] 2026-03-03 18:27:53,322 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-03 10:28:25] 2026-03-03 18:27:53,322 | INFO     | fitting pss+swap vs Time
[2026-03-03 10:28:25] 2026-03-03 18:27:53,323 | INFO     | sum of square deviations: 8362947.5
[2026-03-03 10:28:25] 2026-03-03 18:27:53,323 | INFO     | sum of deviations: -736532696.5
[2026-03-03 10:28:25] 2026-03-03 18:27:53,323 | INFO     | mean x: 1772561414.5
[2026-03-03 10:28:25] 2026-03-03 18:27:53,323 | INFO     | mean y: 2882454.7666666666
[2026-03-03 10:28:25] 2026-03-03 18:27:53,323 | INFO     | intersect: 156114042824.18655
[2026-03-03 10:28:25] 2026-03-03 18:27:53,323 | INFO     | chi2: 0.015675550127134612
[2026-03-03 10:28:25] 2026-03-03 18:27:53,323 | INFO     | current memory leak: -88.07 B/s (using 30 data points, chi2=0.02)
[2026-03-03 10:28:25] 2026-03-03 18:27:53,323 | INFO     | could have reported an average CPU frequency of 2893 MHz (5 samples)
[2026-03-03 10:28:25] 2026-03-03 18:27:53,323 | INFO     | ..............................
[2026-03-03 10:28:25] 2026-03-03 18:27:53,323 | INFO     | . Timing measurements:
[2026-03-03 10:28:25] 2026-03-03 18:27:53,323 | INFO     | . get job = 0 s
[2026-03-03 10:28:25] 2026-03-03 18:27:53,323 | INFO     | . initial setup = 5 s
[2026-03-03 10:28:25] 2026-03-03 18:27:53,323 | INFO     | . payload setup = 3 s
[2026-03-03 10:28:25] 2026-03-03 18:27:53,323 | INFO     | . stage-in = 0 s
[2026-03-03 10:28:25] 2026-03-03 18:27:53,323 | INFO     | . payload execution = 2242 s
[2026-03-03 10:28:25] 2026-03-03 18:27:53,323 | INFO     | . stage-out = 0 s
[2026-03-03 10:28:25] 2026-03-03 18:27:53,323 | INFO     | . log creation = 0 s
[2026-03-03 10:28:25] 2026-03-03 18:27:53,323 | INFO     | ..............................
[2026-03-03 10:28:25] 2026-03-03 18:27:53,366 | INFO     | 
[2026-03-03 10:28:25] 2026-03-03 18:27:53,366 | INFO     | job summary report
[2026-03-03 10:28:25] 2026-03-03 18:27:53,366 | INFO     | --------------------------------------------------
[2026-03-03 10:28:25] 2026-03-03 18:27:53,366 | INFO     | PanDA job id: 7032232250
[2026-03-03 10:28:25] 2026-03-03 18:27:53,367 | INFO     | task id: 48838615
[2026-03-03 10:28:25] 2026-03-03 18:27:53,367 | INFO     | errors: (none)
[2026-03-03 10:28:25] 2026-03-03 18:27:53,367 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-03 10:28:25] 2026-03-03 18:27:53,367 | INFO     | pilot state: finished 
[2026-03-03 10:28:25] 2026-03-03 18:27:53,367 | INFO     | transexitcode: 0
[2026-03-03 10:28:25] 2026-03-03 18:27:53,367 | INFO     | exeerrorcode: 0
[2026-03-03 10:28:25] 2026-03-03 18:27:53,367 | INFO     | exeerrordiag: 
[2026-03-03 10:28:25] 2026-03-03 18:27:53,367 | INFO     | exitcode: 0
[2026-03-03 10:28:25] 2026-03-03 18:27:53,367 | INFO     | exitmsg: OK
[2026-03-03 10:28:25] 2026-03-03 18:27:53,367 | INFO     | cpuconsumptiontime: 23850 s
[2026-03-03 10:28:25] 2026-03-03 18:27:53,367 | INFO     | nevents: 400
[2026-03-03 10:28:25] 2026-03-03 18:27:53,367 | INFO     | neventsw: 0
[2026-03-03 10:28:25] 2026-03-03 18:27:53,367 | INFO     | pid: 1681124
[2026-03-03 10:28:25] 2026-03-03 18:27:53,367 | INFO     | pgrp: 1681124
[2026-03-03 10:28:25] 2026-03-03 18:27:53,367 | INFO     | corecount: 12
[2026-03-03 10:28:25] 2026-03-03 18:27:53,367 | INFO     | event service: False
[2026-03-03 10:28:25] 2026-03-03 18:27:53,367 | INFO     | sizes: {0: 2287084, 11: 2287084, 2249: 2312171, 2250: 2321238, 2252: 2321238, 2254: 2321464}
[2026-03-03 10:28:25] 2026-03-03 18:27:53,367 | INFO     | --------------------------------------------------
[2026-03-03 10:28:25] 2026-03-03 18:27:53,367 | INFO     | 
[2026-03-03 10:28:25] 2026-03-03 18:27:53,367 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/0
[2026-03-03 10:28:25] 2026-03-03 18:27:53,385 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-03 10:28:25] 2026-03-03 18:27:53,385 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-03 10:28:25] 2026-03-03 18:27:53,385 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-03 10:28:25] 2026-03-03 18:27:53,385 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-03 10:28:25] 2026-03-03 18:27:53,385 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-03 10:28:25] 2026-03-03 18:27:53,385 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-03 10:28:25] 2026-03-03 18:27:53,385 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-03 10:28:25] 2026-03-03 18:27:53,385 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-03 10:28:25] 2026-03-03 18:27:53,386 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-03 10:28:25] 2026-03-03 18:27:53,386 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-03 10:28:25] 2026-03-03 18:27:53,386 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-03 10:28:25] 2026-03-03 18:27:53,386 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-03 10:28:25] 2026-03-03 18:27:53,386 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-03 10:28:25] 2026-03-03 18:27:53,386 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-03 10:28:25] 2026-03-03 18:27:53,386 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-03 10:28:25] 2026-03-03 18:27:53,386 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-03 10:28:25] 2026-03-03 18:27:53,386 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-03 10:28:25] 2026-03-03 18:27:53,386 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-03 10:28:25] 2026-03-03 18:27:53,386 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-03 10:28:25] 2026-03-03 18:27:53,386 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-03 10:28:25] 2026-03-03 18:27:53,386 | INFO     | job 7032232250 has completed (purged errors)
[2026-03-03 10:28:25] 2026-03-03 18:27:53,386 | INFO     | overall cleanup function is called
[2026-03-03 10:28:25] 2026-03-03 18:27:54,391 | INFO     | --- collectZombieJob: --- 10, [1681124]
[2026-03-03 10:28:25] 2026-03-03 18:27:54,391 | INFO     | zombie collector waiting for pid 1681124
[2026-03-03 10:28:25] 2026-03-03 18:27:54,391 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-03 10:28:25] 2026-03-03 18:27:54,391 | INFO     | collected zombie processes
[2026-03-03 10:28:25] 2026-03-03 18:27:54,391 | INFO     | will attempt to kill all subprocesses of pid=1681124
[2026-03-03 10:28:25] 2026-03-03 18:27:54,465 | INFO     | process IDs to be killed: [1681124] (in reverse order)
[2026-03-03 10:28:25] 2026-03-03 18:27:54,497 | WARNING  | found no corresponding commands to process id(s)
[2026-03-03 10:28:25] 2026-03-03 18:27:54,497 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-03 10:28:25] 2026-03-03 18:27:54,500 | INFO     | did not find any defunct processes belonging to 1681124
[2026-03-03 10:28:25] 2026-03-03 18:27:54,501 | INFO     | did not find any defunct processes belonging to 1681124
[2026-03-03 10:28:25] 2026-03-03 18:27:54,502 | INFO     | ready for new job
[2026-03-03 10:28:25] 2026-03-03 18:27:54,502 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-03 10:28:25] 2026-03-03 18:27:54,503 | INFO     | **************************************
[2026-03-03 10:28:25] 2026-03-03 18:27:54,503 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-03 10:28:25] 2026-03-03 18:27:54,503 | INFO     | **************************************
[2026-03-03 10:28:25] 2026-03-03 18:27:54,503 | INFO     | 
[2026-03-03 10:28:25] 2026-03-03 18:27:54,504 | INFO     | pilot is running in a VM
[2026-03-03 10:28:25] 2026-03-03 18:27:54,504 | INFO     | architecture information:
[2026-03-03 10:28:25] 2026-03-03 18:27:54,504 | INFO     | executing command: cat /etc/os-release
[2026-03-03 10:28:25] 2026-03-03 18:27:54,513 | INFO     | cat /etc/os-release:
[2026-03-03 10:28:25] NAME="CentOS Linux"
[2026-03-03 10:28:25] VERSION="7 (Core)"
[2026-03-03 10:28:25] ID="centos"
[2026-03-03 10:28:25] ID_LIKE="rhel fedora"
[2026-03-03 10:28:25] VERSION_ID="7"
[2026-03-03 10:28:25] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-03 10:28:25] ANSI_COLOR="0;31"
[2026-03-03 10:28:25] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-03 10:28:25] HOME_URL="https://www.centos.org/"
[2026-03-03 10:28:25] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-03 10:28:25] 
[2026-03-03 10:28:25] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-03 10:28:25] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-03 10:28:25] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-03 10:28:25] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-03 10:28:25] 
[2026-03-03 10:28:25] 2026-03-03 18:27:54,513 | INFO     | **************************************
[2026-03-03 10:28:25] 2026-03-03 18:27:55,016 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/0
[2026-03-03 10:28:25] 2026-03-03 18:27:55,029 | INFO     | sufficient remaining disk space (2023424524288 B)
[2026-03-03 10:28:25] 2026-03-03 18:27:55,029 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-03 10:28:25] 2026-03-03 18:27:55,029 | INFO     | current server update state: UPDATING_FINAL
[2026-03-03 10:28:25] 2026-03-03 18:27:55,029 | INFO     | update_server=False
[2026-03-03 10:28:25] 2026-03-03 18:27:55,029 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-03 10:28:25] 2026-03-03 18:27:55,029 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-03 10:28:25] 2026-03-03 18:27:55,029 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-03 10:28:25] 2026-03-03 18:27:55,030 | INFO     | aborting loop
[2026-03-03 10:28:25] 2026-03-03 18:27:55,063 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-03 10:28:25] 2026-03-03 18:27:55,164 | INFO     | all job control threads have been joined
[2026-03-03 10:28:25] 2026-03-03 18:27:55,356 | INFO     | all data control threads have been joined
[2026-03-03 10:28:25] 2026-03-03 18:27:56,034 | INFO     | [job] retrieve thread has finished
[2026-03-03 10:28:25] 2026-03-03 18:27:56,035 | INFO     | [job] queue monitor thread has finished
[2026-03-03 10:28:25] 2026-03-03 18:27:56,035 | INFO     | [job] job monitor thread has finished
[2026-03-03 10:28:25] 2026-03-03 18:27:56,069 | INFO     | [payload] validate_post thread has finished
[2026-03-03 10:28:25] 2026-03-03 18:27:56,084 | INFO     | all payload control threads have been joined
[2026-03-03 10:28:25] 2026-03-03 18:27:56,170 | INFO     | [job] control thread has finished
[2026-03-03 10:28:25] 2026-03-03 18:27:56,360 | INFO     | [data] control thread has finished
[2026-03-03 10:28:25] 2026-03-03 18:27:56,661 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-03 10:28:25] 2026-03-03 18:27:56,701 | INFO     | [job] validate thread has finished
[2026-03-03 10:28:25] 2026-03-03 18:27:56,709 | INFO     | [payload] validate_pre thread has finished
[2026-03-03 10:28:25] 2026-03-03 18:27:56,739 | INFO     | [payload] failed_post thread has finished
[2026-03-03 10:28:25] 2026-03-03 18:27:56,818 | INFO     | [payload] execute_payloads thread has finished
[2026-03-03 10:28:25] 2026-03-03 18:27:56,849 | INFO     | [job] create_data_payload thread has finished
[2026-03-03 10:28:25] 2026-03-03 18:27:56,868 | INFO     | [data] copytool_in thread has finished
[2026-03-03 10:28:25] 2026-03-03 18:27:57,069 | INFO     | [data] copytool_out thread has finished
[2026-03-03 10:28:25] 2026-03-03 18:27:57,089 | INFO     | [payload] control thread has finished
[2026-03-03 10:28:25] 2026-03-03 18:28:00,667 | INFO     | [data] queue_monitor thread has finished
[2026-03-03 10:28:25] 2026-03-03 18:28:05,595 | INFO     | job.realtimelogging is not enabled
[2026-03-03 10:28:25] 2026-03-03 18:28:06,601 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-03 10:28:25] 2026-03-03 18:28:10,751 | INFO     | [monitor] cgroup control has ended
[2026-03-03 10:28:25] 2026-03-03 18:28:11,015 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 131887768463168)>', '<ExcThread(monitor, started 131887070689024)>']
[2026-03-03 10:28:25] 2026-03-03 18:28:16,040 | INFO     | all workflow threads have been joined
[2026-03-03 10:28:25] 2026-03-03 18:28:16,041 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-03 10:28:25] 2026-03-03 18:28:16,041 | INFO     | traces error code: 0
[2026-03-03 10:28:25] 2026-03-03 18:28:16,041 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-03 10:28:25] 2026-03-03 18:28:25,356 | INFO     | PID=1676592 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-03 10:28:25] 2026-03-03 18:28:25,356 | INFO     | .. there are 2 such processes running
[2026-03-03 10:28:25] 2026-03-03 18:28:25,357 | INFO     | found 0 job(s) in 20 queues
[2026-03-03 10:28:25] 2026-03-03 18:28:25,357 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-03 10:28:25] 2026-03-03 18:28:25,357 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-03 10:28:25] 2026-03-03 18:28:25,357 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-03 10:28:25] 2026-03-03 18:28:25,357 | INFO     | [monitor] control thread has ended
[2026-03-03 10:28:25] 2026-03-03 18:28:25,438 [wrapper] ==== pilot stdout END ====
[2026-03-03 10:28:25] 2026-03-03 18:28:25,440 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-03 10:28:25] 2026-03-03 18:28:25,442 [wrapper] pilotpid: 1676592
[2026-03-03 10:28:25] 2026-03-03 18:28:25,444 [wrapper] Pilot exit status: 0
[2026-03-03 10:28:25] 2026-03-03 18:28:25,451 [wrapper] pandaids: 7032232250
[2026-03-03 10:28:25] 2026-03-03 18:28:25,471 [wrapper] cleanup supervisor_pilot 1685787 1676593
[2026-03-03 10:28:25] 2026-03-03 18:28:25,473 [wrapper] Test setup, not cleaning
[2026-03-03 10:28:25] 2026-03-03 18:28:25,475 [wrapper] apfmon messages muted
[2026-03-03 10:28:25] 2026-03-03 18:28:25,477 [wrapper] ==== wrapper stdout END ====
[2026-03-03 10:28:25] 2026-03-03 18:28:25,478 [wrapper] ==== wrapper stderr END ====
[2026-03-03 10:28:25]  *** Error codes and diagnostics ***
[2026-03-03 10:28:25]     "exeErrorCode": 0,
[2026-03-03 10:28:25]     "exeErrorDiag": "",
[2026-03-03 10:28:25]     "pilotErrorCode": 0,
[2026-03-03 10:28:25]     "pilotErrorDiag": "",
[2026-03-03 10:28:25]  *** Listing of results directory ***
[2026-03-03 10:28:25] total 464700
[2026-03-03 10:28:25] -rw-r--r-- 1 boinc boinc    584627 Feb 27 14:54 pilot3.tar.gz
[2026-03-03 10:28:25] -rw-r--r-- 1 boinc boinc      5111 Feb 27 14:55 queuedata.json
[2026-03-03 10:28:25] -rwx------ 1 boinc boinc     36322 Feb 27 14:56 runpilot2-wrapper.sh
[2026-03-03 10:28:25] -rw-r--r-- 1 boinc boinc       100 Mar  3 09:49 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-03 10:28:25] -rwxr-xr-x 1 boinc boinc      7986 Mar  3 09:49 run_atlas
[2026-03-03 10:28:25] -rw-r--r-- 1 boinc boinc       105 Mar  3 09:49 job.xml
[2026-03-03 10:28:25] -rw-r--r-- 2 boinc boinc 268341090 Mar  3 09:49 EVNT.48343789._000085.pool.root.1
[2026-03-03 10:28:25] -rw-r--r-- 1 boinc boinc      6532 Mar  3 09:49 init_data.xml
[2026-03-03 10:28:25] -rw-r--r-- 2 boinc boinc     15845 Mar  3 09:49 start_atlas.sh
[2026-03-03 10:28:25] drwxrwx--x 2 boinc boinc      4096 Mar  3 09:49 shared
[2026-03-03 10:28:25] -rw-r--r-- 2 boinc boinc    597961 Mar  3 09:49 input.tar.gz
[2026-03-03 10:28:25] -rw-r--r-- 1 boinc boinc         0 Mar  3 09:49 boinc_lockfile
[2026-03-03 10:28:25] -rw-r--r-- 1 boinc boinc      2567 Mar  3 09:49 pandaJob.out
[2026-03-03 10:28:25] -rw------- 1 boinc boinc    998508 Mar  3 09:50 agis_schedconf.cvmfs.json
[2026-03-03 10:28:25] -rw------- 1 boinc boinc   1516092 Mar  3 09:50 agis_ddmendpoints.agis.ALL.json
[2026-03-03 10:28:25] -rw------- 1 boinc boinc       431 Mar  3 09:50 workernode_map.json
[2026-03-03 10:28:25] drwx------ 5 boinc boinc      4096 Mar  3 09:50 pilot3
[2026-03-03 10:28:25] -rw------- 1 boinc boinc 202163619 Mar  3 10:27 HITS.48838615._002129.pool.root.1
[2026-03-03 10:28:25] -rw-r--r-- 1 boinc boinc       529 Mar  3 10:27 boinc_task_state.xml
[2026-03-03 10:28:25] -rw------- 1 boinc boinc      1031 Mar  3 10:27 memory_monitor_summary.json
[2026-03-03 10:28:25] -rw------- 1 boinc boinc    342076 Mar  3 10:27 log.48838615._002129.job.log.tgz.1
[2026-03-03 10:28:25] -rw------- 1 boinc boinc      6333 Mar  3 10:27 heartbeat.json
[2026-03-03 10:28:25] -rw-r--r-- 1 boinc boinc      8192 Mar  3 10:28 boinc_mmap_file
[2026-03-03 10:28:25] -rw-r--r-- 1 boinc boinc        27 Mar  3 10:28 wrapper_checkpoint.txt
[2026-03-03 10:28:25] -rw------- 1 boinc boinc       822 Mar  3 10:28 pilotlog.txt
[2026-03-03 10:28:25] -rw------- 1 boinc boinc        95 Mar  3 10:28 pilot_heartbeat.json
[2026-03-03 10:28:25] -rw------- 1 boinc boinc    369605 Mar  3 10:28 log.48838615._002129.job.log.1
[2026-03-03 10:28:25] -rw------- 1 boinc boinc       357 Mar  3 10:28 output.list
[2026-03-03 10:28:25] -rw-r--r-- 1 boinc boinc       620 Mar  3 10:28 runtime_log
[2026-03-03 10:28:25] -rw------- 1 boinc boinc    727040 Mar  3 10:28 result.tar.gz
[2026-03-03 10:28:25] -rw-r--r-- 1 boinc boinc      8862 Mar  3 10:28 runtime_log.err
[2026-03-03 10:28:25] -rw------- 1 boinc boinc       635 Mar  3 10:28 qpgLDm0vLG9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmlw5KDmu2HXJo.diag
[2026-03-03 10:28:25] -rw-r--r-- 1 boinc boinc     21437 Mar  3 10:28 stderr.txt
[2026-03-03 10:28:25] HITS file was successfully produced:
[2026-03-03 10:28:25] -rw------- 1 boinc boinc 202163619 Mar  3 10:27 shared/HITS.pool.root.1
[2026-03-03 10:28:25]  *** Contents of shared directory: ***
[2026-03-03 10:28:25] total 460796
[2026-03-03 10:28:25] -rw-r--r-- 2 boinc boinc 268341090 Mar  3 09:49 ATLAS.root_0
[2026-03-03 10:28:25] -rw-r--r-- 2 boinc boinc     15845 Mar  3 09:49 start_atlas.sh
[2026-03-03 10:28:25] -rw-r--r-- 2 boinc boinc    597961 Mar  3 09:49 input.tar.gz
[2026-03-03 10:28:25] -rw------- 1 boinc boinc 202163619 Mar  3 10:27 HITS.pool.root.1
[2026-03-03 10:28:25] -rw------- 1 boinc boinc    727040 Mar  3 10:28 result.tar.gz
10:28:27 (1672521): run_atlas exited; CPU time 23857.470543
10:28:27 (1672521): called boinc_finish(0)

</stderr_txt>
]]>

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