Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
15:00:34 (3426636): wrapper (7.7.26015): starting
15:00:34 (3426636): wrapper: running run_atlas (--nthreads 4)
[2026-03-03 15:00:34] Arguments: --nthreads 4
[2026-03-03 15:00:34] Threads: 4
[2026-03-03 15:00:34] Checking for CVMFS
[2026-03-03 15:00:34] No cvmfs_config command found, will try listing directly
[2026-03-03 15:00:34] CVMFS is ok
[2026-03-03 15:00:34] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-03 15:00:34] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-03 15:00:34] Further information can be found at the LHC@home message board.
[2026-03-03 15:00:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-03 15:00:34] Checking for apptainer binary...
[2026-03-03 15:00:34] which: no apptainer in ((null))
[2026-03-03 15:00:34] apptainer is not installed, using version from CVMFS
[2026-03-03 15:00:34] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-03 15:00:34] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot68/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut17.grid.cesnet.cz
[2026-03-03 15:00:34] apptainer works
[2026-03-03 15:00:34] Set ATHENA_PROC_NUMBER=4
[2026-03-03 15:00:34] Set ATHENA_CORE_NUMBER=4
[2026-03-03 15:00:34] Starting ATLAS job with PandaID=7036159798
[2026-03-03 15:00:34] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot68/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-03 20:41:12]  *** The last 200 lines of the pilot log: ***
[2026-03-03 20:41:12] 2026-03-03 19:38:53,658 | INFO     | chi2: 0.010025049072346824
[2026-03-03 20:41:12] 2026-03-03 19:38:53,658 | INFO     | current chi2=0.010025049072346824 (change=99.23528224203179 %)
[2026-03-03 20:41:12] 2026-03-03 19:38:53,659 | INFO     | sum of square deviations: 10352419220.5
[2026-03-03 20:41:12] 2026-03-03 19:38:53,661 | INFO     | sum of deviations: 12289337123.0
[2026-03-03 20:41:12] 2026-03-03 19:38:53,662 | INFO     | mean x: 1772556902.5
[2026-03-03 20:41:12] 2026-03-03 19:38:53,662 | INFO     | mean y: 2335450.403726708
[2026-03-03 20:41:12] 2026-03-03 19:38:53,662 | INFO     | intersect: -2101863469.7276242
[2026-03-03 20:41:12] 2026-03-03 19:38:53,662 | INFO     | chi2: 0.006779156959982593
[2026-03-03 20:41:12] 2026-03-03 19:38:53,662 | INFO     | current chi2=0.006779156959982593 (change=32.377817693857736 %)
[2026-03-03 20:41:12] 2026-03-03 19:38:53,663 | INFO     | sum of square deviations: 9877610318.0
[2026-03-03 20:41:12] 2026-03-03 19:38:53,665 | INFO     | sum of deviations: 13926776898.000002
[2026-03-03 20:41:12] 2026-03-03 19:38:53,665 | INFO     | mean x: 1772557055.0
[2026-03-03 20:41:12] 2026-03-03 19:38:53,665 | INFO     | mean y: 2334928.6529968455
[2026-03-03 20:41:12] 2026-03-03 19:38:53,665 | INFO     | intersect: -2496853220.020527
[2026-03-03 20:41:12] 2026-03-03 19:38:53,666 | INFO     | chi2: 0.0030954001078026603
[2026-03-03 20:41:12] 2026-03-03 19:38:53,666 | INFO     | current chi2=0.0030954001078026603 (change=54.33945362122714 %)
[2026-03-03 20:41:12] 2026-03-03 19:38:53,666 | INFO     | sum of square deviations: 9417545878.0
[2026-03-03 20:41:12] 2026-03-03 19:38:53,669 | INFO     | sum of deviations: 11715183407.00001
[2026-03-03 20:41:12] 2026-03-03 19:38:53,669 | INFO     | mean x: 1772557207.5
[2026-03-03 20:41:12] 2026-03-03 19:38:53,669 | INFO     | mean y: 2335661.378205128
[2026-03-03 20:41:12] 2026-03-03 19:38:53,669 | INFO     | intersect: -2202679642.4253693
[2026-03-03 20:41:12] 2026-03-03 19:38:53,669 | INFO     | chi2: 0.002052368398634398
[2026-03-03 20:41:12] 2026-03-03 19:38:53,669 | INFO     | current chi2=0.002052368398634398 (change=33.69618378377205 %)
[2026-03-03 20:41:12] 2026-03-03 19:38:53,670 | INFO     | sum of square deviations: 8971993338.0
[2026-03-03 20:41:12] 2026-03-03 19:38:53,672 | INFO     | sum of deviations: 9740483781.999998
[2026-03-03 20:41:12] 2026-03-03 19:38:53,672 | INFO     | mean x: 1772557360.0
[2026-03-03 20:41:12] 2026-03-03 19:38:53,672 | INFO     | mean y: 2336337.081433225
[2026-03-03 20:41:12] 2026-03-03 19:38:53,672 | INFO     | intersect: -1922048308.259097
[2026-03-03 20:41:12] 2026-03-03 19:38:53,673 | INFO     | chi2: 0.0011707800874014727
[2026-03-03 20:41:12] 2026-03-03 19:38:53,673 | INFO     | current chi2=0.0011707800874014727 (change=42.95468161659063 %)
[2026-03-03 20:41:12] 2026-03-03 19:38:53,673 | INFO     | sum of square deviations: 8540720135.5
[2026-03-03 20:41:12] 2026-03-03 19:38:53,676 | INFO     | sum of deviations: 8439750190.499996
[2026-03-03 20:41:12] 2026-03-03 19:38:53,676 | INFO     | mean x: 1772557512.5
[2026-03-03 20:41:12] 2026-03-03 19:38:53,676 | INFO     | mean y: 2336796.0894039734
[2026-03-03 20:41:12] 2026-03-03 19:38:53,676 | INFO     | intersect: -1749265219.484459
[2026-03-03 20:41:12] 2026-03-03 19:38:53,676 | INFO     | chi2: 0.00081909737513767
[2026-03-03 20:41:12] 2026-03-03 19:38:53,676 | INFO     | current chi2=0.00081909737513767 (change=30.03832368249077 %)
[2026-03-03 20:41:12] 2026-03-03 19:38:53,677 | INFO     | sum of square deviations: 8123493708.0
[2026-03-03 20:41:12] 2026-03-03 19:38:53,679 | INFO     | sum of deviations: 7731848271.000002
[2026-03-03 20:41:12] 2026-03-03 19:38:53,679 | INFO     | mean x: 1772557665.0
[2026-03-03 20:41:12] 2026-03-03 19:38:53,679 | INFO     | mean y: 2337054.5656565656
[2026-03-03 20:41:12] 2026-03-03 19:38:53,679 | INFO     | intersect: -1684763029.4636137
[2026-03-03 20:41:12] 2026-03-03 19:38:53,679 | INFO     | chi2: 0.0007737312022678194
[2026-03-03 20:41:12] 2026-03-03 19:38:53,680 | INFO     | current chi2=0.0007737312022678194 (change=5.5385567390233295 %)
[2026-03-03 20:41:12] 2026-03-03 19:38:53,680 | INFO     | left removable region: 70
[2026-03-03 20:41:12] 2026-03-03 19:38:53,680 | INFO     | sum of square deviations: 5202255680.0
[2026-03-03 20:41:12] 2026-03-03 19:38:53,682 | INFO     | sum of deviations: 3245968935.5
[2026-03-03 20:41:12] 2026-03-03 19:38:53,682 | INFO     | mean x: 1772558549.5
[2026-03-03 20:41:12] 2026-03-03 19:38:53,682 | INFO     | mean y: 2338641.54296875
[2026-03-03 20:41:12] 2026-03-03 19:38:53,682 | INFO     | intersect: -1103656592.4382913
[2026-03-03 20:41:12] 2026-03-03 19:38:53,682 | INFO     | chi2: 0.0004442939922260002
[2026-03-03 20:41:12] 2026-03-03 19:38:53,683 | INFO     | current memory leak: 0.62 B/s (using 256 data points, chi2=0.00)
[2026-03-03 20:41:12] 2026-03-03 19:38:53,683 | INFO     | could have reported an average CPU frequency of 2704 MHz (15 samples)
[2026-03-03 20:41:12] 2026-03-03 19:38:53,683 | INFO     | ..............................
[2026-03-03 20:41:12] 2026-03-03 19:38:53,683 | INFO     | . Timing measurements:
[2026-03-03 20:41:12] 2026-03-03 19:38:53,683 | INFO     | . get job = 0 s
[2026-03-03 20:41:12] 2026-03-03 19:38:53,683 | INFO     | . initial setup = 10 s
[2026-03-03 20:41:12] 2026-03-03 19:38:53,683 | INFO     | . payload setup = 12 s
[2026-03-03 20:41:12] 2026-03-03 19:38:53,683 | INFO     | . stage-in = 0 s
[2026-03-03 20:41:12] 2026-03-03 19:38:53,684 | INFO     | . payload execution = 20237 s
[2026-03-03 20:41:12] 2026-03-03 19:38:53,684 | INFO     | . stage-out = 1 s
[2026-03-03 20:41:12] 2026-03-03 19:38:53,684 | INFO     | . log creation = 0 s
[2026-03-03 20:41:12] 2026-03-03 19:38:53,684 | INFO     | ..............................
[2026-03-03 20:41:12] 2026-03-03 19:38:53,770 | INFO     | 
[2026-03-03 20:41:12] 2026-03-03 19:38:53,770 | INFO     | job summary report
[2026-03-03 20:41:12] 2026-03-03 19:38:53,770 | INFO     | --------------------------------------------------
[2026-03-03 20:41:12] 2026-03-03 19:38:53,770 | INFO     | PanDA job id: 7036159798
[2026-03-03 20:41:12] 2026-03-03 19:38:53,770 | INFO     | task id: 48852041
[2026-03-03 20:41:12] 2026-03-03 19:38:53,770 | INFO     | errors: (none)
[2026-03-03 20:41:12] 2026-03-03 19:38:53,770 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-03 20:41:12] 2026-03-03 19:38:53,770 | INFO     | pilot state: finished 
[2026-03-03 20:41:12] 2026-03-03 19:38:53,770 | INFO     | transexitcode: 0
[2026-03-03 20:41:12] 2026-03-03 19:38:53,770 | INFO     | exeerrorcode: 0
[2026-03-03 20:41:12] 2026-03-03 19:38:53,770 | INFO     | exeerrordiag: 
[2026-03-03 20:41:12] 2026-03-03 19:38:53,771 | INFO     | exitcode: 0
[2026-03-03 20:41:12] 2026-03-03 19:38:53,771 | INFO     | exitmsg: OK
[2026-03-03 20:41:12] 2026-03-03 19:38:53,771 | INFO     | cpuconsumptiontime: 76975 s
[2026-03-03 20:41:12] 2026-03-03 19:38:53,771 | INFO     | nevents: 400
[2026-03-03 20:41:12] 2026-03-03 19:38:53,771 | INFO     | neventsw: 0
[2026-03-03 20:41:12] 2026-03-03 19:38:53,771 | INFO     | pid: 3436124
[2026-03-03 20:41:12] 2026-03-03 19:38:53,771 | INFO     | pgrp: 3436124
[2026-03-03 20:41:12] 2026-03-03 19:38:53,771 | INFO     | corecount: 4
[2026-03-03 20:41:12] 2026-03-03 19:38:53,771 | INFO     | event service: False
[2026-03-03 20:41:12] 2026-03-03 19:38:53,771 | INFO     | sizes: {0: 2287171, 1: 2287231, 11: 2287259, 20253: 2321785, 20254: 2330861, 20257: 2330999}
[2026-03-03 20:41:12] 2026-03-03 19:38:53,771 | INFO     | --------------------------------------------------
[2026-03-03 20:41:12] 2026-03-03 19:38:53,771 | INFO     | 
[2026-03-03 20:41:12] 2026-03-03 19:38:53,771 | INFO     | executing command: ls -lF /scratch/boinc/var/slot68/slots/0
[2026-03-03 20:41:12] 2026-03-03 19:38:53,801 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-03 20:41:12] 2026-03-03 19:38:53,801 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-03 20:41:12] 2026-03-03 19:38:53,802 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-03 20:41:12] 2026-03-03 19:38:53,802 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-03 20:41:12] 2026-03-03 19:38:53,802 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-03 20:41:12] 2026-03-03 19:38:53,802 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-03 20:41:12] 2026-03-03 19:38:53,802 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-03 20:41:12] 2026-03-03 19:38:53,802 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-03 20:41:12] 2026-03-03 19:38:53,802 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-03 20:41:12] 2026-03-03 19:38:53,802 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-03 20:41:12] 2026-03-03 19:38:53,802 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-03 20:41:12] 2026-03-03 19:38:53,802 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-03 20:41:12] 2026-03-03 19:38:53,803 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-03 20:41:12] 2026-03-03 19:38:53,803 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-03 20:41:12] 2026-03-03 19:38:53,803 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-03 20:41:12] 2026-03-03 19:38:53,803 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-03 20:41:12] 2026-03-03 19:38:53,803 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-03 20:41:12] 2026-03-03 19:38:53,803 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-03 20:41:12] 2026-03-03 19:38:53,803 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-03 20:41:12] 2026-03-03 19:38:53,803 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-03 20:41:12] 2026-03-03 19:38:53,803 | INFO     | job 7036159798 has completed (purged errors)
[2026-03-03 20:41:12] 2026-03-03 19:38:53,804 | INFO     | overall cleanup function is called
[2026-03-03 20:41:12] 2026-03-03 19:38:54,813 | INFO     | --- collectZombieJob: --- 10, [3436124]
[2026-03-03 20:41:12] 2026-03-03 19:38:54,814 | INFO     | zombie collector waiting for pid 3436124
[2026-03-03 20:41:12] 2026-03-03 19:38:54,814 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-03 20:41:12] 2026-03-03 19:38:54,814 | INFO     | collected zombie processes
[2026-03-03 20:41:12] 2026-03-03 19:38:54,814 | INFO     | will attempt to kill all subprocesses of pid=3436124
[2026-03-03 20:41:12] 2026-03-03 19:38:55,584 | INFO     | process IDs to be killed: [3436124] (in reverse order)
[2026-03-03 20:41:12] 2026-03-03 19:38:55,893 | WARNING  | found no corresponding commands to process id(s)
[2026-03-03 20:41:12] 2026-03-03 19:38:55,893 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-03 20:41:12] 2026-03-03 19:38:55,922 | INFO     | did not find any defunct processes belonging to 3436124
[2026-03-03 20:41:12] 2026-03-03 19:38:55,949 | INFO     | did not find any defunct processes belonging to 3436124
[2026-03-03 20:41:12] 2026-03-03 19:38:55,949 | INFO     | ready for new job
[2026-03-03 20:41:12] 2026-03-03 19:38:55,949 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-03 20:41:12] 2026-03-03 19:38:55,952 | INFO     | **************************************
[2026-03-03 20:41:12] 2026-03-03 19:38:55,953 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-03 20:41:12] 2026-03-03 19:38:55,953 | INFO     | **************************************
[2026-03-03 20:41:12] 2026-03-03 19:38:55,953 | INFO     | 
[2026-03-03 20:41:12] 2026-03-03 19:38:55,961 | INFO     | architecture information:
[2026-03-03 20:41:12] 2026-03-03 19:38:55,962 | INFO     | executing command: cat /etc/os-release
[2026-03-03 20:41:12] 2026-03-03 19:38:55,987 | INFO     | cat /etc/os-release:
[2026-03-03 20:41:12] NAME="CentOS Linux"
[2026-03-03 20:41:12] VERSION="7 (Core)"
[2026-03-03 20:41:12] ID="centos"
[2026-03-03 20:41:12] ID_LIKE="rhel fedora"
[2026-03-03 20:41:12] VERSION_ID="7"
[2026-03-03 20:41:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-03 20:41:12] ANSI_COLOR="0;31"
[2026-03-03 20:41:12] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-03 20:41:12] HOME_URL="https://www.centos.org/"
[2026-03-03 20:41:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-03 20:41:12] 
[2026-03-03 20:41:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-03 20:41:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-03 20:41:12] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-03 20:41:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-03 20:41:12] 
[2026-03-03 20:41:12] 2026-03-03 19:38:55,987 | INFO     | **************************************
[2026-03-03 20:41:12] 2026-03-03 19:38:56,490 | INFO     | executing command: df -mP /scratch/boinc/var/slot68/slots/0
[2026-03-03 20:41:12] 2026-03-03 19:38:56,518 | INFO     | sufficient remaining disk space (3323983822848 B)
[2026-03-03 20:41:12] 2026-03-03 19:38:56,518 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-03 20:41:12] 2026-03-03 19:38:56,518 | INFO     | current server update state: UPDATING_FINAL
[2026-03-03 20:41:12] 2026-03-03 19:38:56,519 | INFO     | update_server=False
[2026-03-03 20:41:12] 2026-03-03 19:38:56,519 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-03 20:41:12] 2026-03-03 19:38:56,970 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-03-03 20:41:12] 2026-03-03 19:38:56,971 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-03-03 20:41:12] 2026-03-03 19:38:56,971 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-03 20:41:12] 2026-03-03 19:38:56,971 | INFO     | will abort loop
[2026-03-03 20:41:12] 2026-03-03 19:38:57,008 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-03 20:41:12] 2026-03-03 19:38:57,199 | INFO     | all payload control threads have been joined
[2026-03-03 20:41:12] 2026-03-03 19:38:57,242 | INFO     | all data control threads have been joined
[2026-03-03 20:41:12] 2026-03-03 19:38:57,524 | INFO     | [job] retrieve thread has finished
[2026-03-03 20:41:12] 2026-03-03 19:38:57,613 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-03 20:41:12] 2026-03-03 19:38:57,650 | INFO     | all job control threads have been joined
[2026-03-03 20:41:12] 2026-03-03 19:38:57,808 | INFO     | [job] create_data_payload thread has finished
[2026-03-03 20:41:12] 2026-03-03 19:38:57,816 | INFO     | [payload] validate_pre thread has finished
[2026-03-03 20:41:12] 2026-03-03 19:38:57,829 | INFO     | [job] validate thread has finished
[2026-03-03 20:41:12] 2026-03-03 19:38:57,977 | INFO     | [job] job monitor thread has finished
[2026-03-03 20:41:12] 2026-03-03 19:38:58,204 | INFO     | [payload] control thread has finished
[2026-03-03 20:41:12] 2026-03-03 19:38:58,247 | INFO     | [data] control thread has finished
[2026-03-03 20:41:12] 2026-03-03 19:38:58,395 | INFO     | [payload] execute_payloads thread has finished
[2026-03-03 20:41:12] 2026-03-03 19:38:58,550 | INFO     | [data] copytool_in thread has finished
[2026-03-03 20:41:12] 2026-03-03 19:38:58,653 | INFO     | [payload] failed_post thread has finished
[2026-03-03 20:41:12] 2026-03-03 19:38:58,655 | INFO     | [job] control thread has finished
[2026-03-03 20:41:12] 2026-03-03 19:38:58,780 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-03 20:41:12] 2026-03-03 19:38:58,994 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-03 20:41:12] 2026-03-03 19:38:59,005 | INFO     | [payload] validate_post thread has finished
[2026-03-03 20:41:12] 2026-03-03 19:38:59,013 | INFO     | [data] copytool_out thread has finished
[2026-03-03 20:41:12] 2026-03-03 19:38:59,785 | INFO     | [job] queue monitor thread has finished
[2026-03-03 20:41:12] 2026-03-03 19:39:01,615 | INFO     | [data] queue_monitor thread has finished
[2026-03-03 20:41:12] 2026-03-03 19:39:26,868 | INFO     | PID=3431009 has CPU usage=6.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-03 20:41:12] 2026-03-03 19:39:26,868 | INFO     | .. there are 19 such processes running
[2026-03-03 20:41:12] 2026-03-03 19:39:26,869 | INFO     | found 0 job(s) in 20 queues
[2026-03-03 20:41:12] 2026-03-03 19:39:26,869 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-03 20:41:12] 2026-03-03 19:39:26,869 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-03 20:41:12] 2026-03-03 19:39:38,906 | INFO     | [monitor] cgroup control has ended
[2026-03-03 20:41:12] 2026-03-03 19:39:39,725 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22897603716928)>', '<ExcThread(monitor, started 22897363265280)>']
[2026-03-03 20:41:12] 2026-03-03 19:39:39,929 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-03 20:41:12] 2026-03-03 19:39:39,930 | INFO     | [monitor] control thread has ended
[2026-03-03 20:41:12] 2026-03-03 19:39:44,750 | INFO     | all workflow threads have been joined
[2026-03-03 20:41:12] 2026-03-03 19:39:44,751 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-03 20:41:12] 2026-03-03 19:39:44,751 | INFO     | traces error code: 0
[2026-03-03 20:41:12] 2026-03-03 19:39:44,751 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-03 20:41:12] 2026-03-03 19:39:44,894 [wrapper] ==== pilot stdout END ====
[2026-03-03 20:41:12] 2026-03-03 19:39:44,899 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-03 20:41:12] 2026-03-03 19:39:44,902 [wrapper] pilotpid: 3431009
[2026-03-03 20:41:12] 2026-03-03 19:39:44,906 [wrapper] Pilot exit status: 0
[2026-03-03 20:41:12] 2026-03-03 19:39:44,921 [wrapper] pandaids: 7036159798
[2026-03-03 20:41:12] 2026-03-03 19:39:45,091 [wrapper] cleanup supervisor_pilot 3924369 3431010
[2026-03-03 20:41:12] 2026-03-03 19:39:45,096 [wrapper] Test setup, not cleaning
[2026-03-03 20:41:12] 2026-03-03 19:39:45,099 [wrapper] apfmon messages muted
[2026-03-03 20:41:12] 2026-03-03 19:39:45,103 [wrapper] ==== wrapper stdout END ====
[2026-03-03 20:41:12] 2026-03-03 19:39:45,106 [wrapper] ==== wrapper stderr END ====
[2026-03-03 20:41:12]  *** Error codes and diagnostics ***
[2026-03-03 20:41:12]     "exeErrorCode": 0,
[2026-03-03 20:41:12]     "exeErrorDiag": "",
[2026-03-03 20:41:12]     "pilotErrorCode": 0,
[2026-03-03 20:41:12]     "pilotErrorDiag": "",
[2026-03-03 20:41:12]  *** Listing of results directory ***
[2026-03-03 20:41:12] total 415532
[2026-03-03 20:41:12] -rw-r--r-- 1 boinc boinc    584627 Mar  3 00:56 pilot3.tar.gz
[2026-03-03 20:41:12] -rw-r--r-- 1 boinc boinc      5111 Mar  3 00:57 queuedata.json
[2026-03-03 20:41:12] -rwx------ 1 boinc boinc     36322 Mar  3 00:58 runpilot2-wrapper.sh
[2026-03-03 20:41:12] -rw-r--r-- 1 boinc boinc       100 Mar  3 15:00 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-03 20:41:12] -rwxr-xr-x 1 boinc boinc      7986 Mar  3 15:00 run_atlas
[2026-03-03 20:41:12] -rw-r--r-- 1 boinc boinc       105 Mar  3 15:00 job.xml
[2026-03-03 20:41:12] -rw-r--r-- 2 boinc boinc 220115254 Mar  3 15:00 EVNT.48461616._000001.pool.root.1
[2026-03-03 20:41:12] -rw-r--r-- 1 boinc boinc      6697 Mar  3 15:00 init_data.xml
[2026-03-03 20:41:12] -rw-r--r-- 2 boinc boinc     15845 Mar  3 15:00 start_atlas.sh
[2026-03-03 20:41:12] drwxrwx--x 2 boinc boinc      4096 Mar  3 15:00 shared
[2026-03-03 20:41:12] -rw-r--r-- 2 boinc boinc    597978 Mar  3 15:00 input.tar.gz
[2026-03-03 20:41:12] -rw-r--r-- 1 boinc boinc         0 Mar  3 15:00 boinc_lockfile
[2026-03-03 20:41:12] -rw-r--r-- 1 boinc boinc      2690 Mar  3 15:00 pandaJob.out
[2026-03-03 20:41:12] -rw------- 1 boinc boinc    998434 Mar  3 15:00 agis_schedconf.cvmfs.json
[2026-03-03 20:41:12] -rw------- 1 boinc boinc       443 Mar  3 15:01 workernode_map.json
[2026-03-03 20:41:12] drwx------ 5 boinc boinc      4096 Mar  3 15:01 pilot3
[2026-03-03 20:41:12] -rw------- 1 boinc boinc 194892207 Mar  3 20:38 HITS.48852041._000021.pool.root.1
[2026-03-03 20:41:12] -rw-r--r-- 1 boinc boinc       528 Mar  3 20:38 boinc_task_state.xml
[2026-03-03 20:41:12] -rw------- 1 boinc boinc      1030 Mar  3 20:38 memory_monitor_summary.json
[2026-03-03 20:41:12] -rw------- 1 boinc boinc   1516092 Mar  3 20:38 agis_ddmendpoints.agis.ALL.json
[2026-03-03 20:41:12] -rw------- 1 boinc boinc    498281 Mar  3 20:38 log.48852041._000021.job.log.tgz.1
[2026-03-03 20:41:12] -rw------- 1 boinc boinc      6346 Mar  3 20:38 heartbeat.json
[2026-03-03 20:41:12] -rw------- 1 boinc boinc        95 Mar  3 20:39 pilot_heartbeat.json
[2026-03-03 20:41:12] -rw------- 1 boinc boinc      5017 Mar  3 20:39 pilotlog.txt
[2026-03-03 20:41:12] -rw------- 1 boinc boinc   2785343 Mar  3 20:39 log.48852041._000021.job.log.1
[2026-03-03 20:41:12] -rw------- 1 boinc boinc       357 Mar  3 20:39 output.list
[2026-03-03 20:41:12] -rw-r--r-- 1 boinc boinc       620 Mar  3 20:39 runtime_log
[2026-03-03 20:41:12] -rw------- 1 boinc boinc   3297280 Mar  3 20:39 result.tar.gz
[2026-03-03 20:41:12] -rw-r--r-- 1 boinc boinc      9205 Mar  3 20:39 runtime_log.err
[2026-03-03 20:41:12] -rw------- 1 boinc boinc       666 Mar  3 20:39 YVhMDmpKSH9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmw2ELDmfpM1Nn.diag
[2026-03-03 20:41:12] -rw-r--r-- 1 boinc boinc        26 Mar  3 20:41 wrapper_checkpoint.txt
[2026-03-03 20:41:12] -rw-r--r-- 1 boinc boinc      8192 Mar  3 20:41 boinc_mmap_file
[2026-03-03 20:41:12] -rw-r--r-- 1 boinc boinc     20777 Mar  3 20:41 stderr.txt
[2026-03-03 20:41:12] HITS file was successfully produced:
[2026-03-03 20:41:12] -rw------- 1 boinc boinc 194892207 Mar  3 20:38 shared/HITS.pool.root.1
[2026-03-03 20:41:12]  *** Contents of shared directory: ***
[2026-03-03 20:41:12] total 409112
[2026-03-03 20:41:12] -rw-r--r-- 2 boinc boinc 220115254 Mar  3 15:00 ATLAS.root_0
[2026-03-03 20:41:12] -rw-r--r-- 2 boinc boinc     15845 Mar  3 15:00 start_atlas.sh
[2026-03-03 20:41:12] -rw-r--r-- 2 boinc boinc    597978 Mar  3 15:00 input.tar.gz
[2026-03-03 20:41:12] -rw------- 1 boinc boinc 194892207 Mar  3 20:38 HITS.pool.root.1
[2026-03-03 20:41:12] -rw------- 1 boinc boinc   3297280 Mar  3 20:39 result.tar.gz
20:41:13 (3426636): run_atlas exited; CPU time 78378.523656
20:41:13 (3426636): called boinc_finish(0)

</stderr_txt>
]]>

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