Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
22:29:43 (2049678): wrapper (7.7.26015): starting
22:29:43 (2049678): wrapper: running run_atlas (--nthreads 4)
[2026-03-03 22:29:43] Arguments: --nthreads 4
[2026-03-03 22:29:43] Threads: 4
[2026-03-03 22:29:43] Checking for CVMFS
[2026-03-03 22:29:43] No cvmfs_config command found, will try listing directly
[2026-03-03 22:29:43] CVMFS is ok
[2026-03-03 22:29:43] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-03 22:29:43] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-03 22:29:43] Further information can be found at the LHC@home message board.
[2026-03-03 22:29:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-03 22:29:43] Checking for apptainer binary...
[2026-03-03 22:29:43] which: no apptainer in ((null))
[2026-03-03 22:29:43] apptainer is not installed, using version from CVMFS
[2026-03-03 22:29:43] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-03 22:29:43] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot24/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut02.grid.cesnet.cz
[2026-03-03 22:29:43] apptainer works
[2026-03-03 22:29:43] Set ATHENA_PROC_NUMBER=4
[2026-03-03 22:29:43] Set ATHENA_CORE_NUMBER=4
[2026-03-03 22:29:43] Starting ATLAS job with PandaID=7036176029
[2026-03-03 22:29:43] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot24/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-04 04:13:40]  *** The last 200 lines of the pilot log: ***
[2026-03-04 04:13:40] 2026-03-04 03:12:53,406 | INFO     | preparing for final server update for job 7036176029 in state='finished'
[2026-03-04 04:13:40] 2026-03-04 03:12:53,406 | INFO     | reading metadata from: /scratch/boinc/var/slot24/slots/0/PanDA_Pilot-7036176029/jobReport.json
[2026-03-04 04:13:40] 2026-03-04 03:12:53,408 | INFO     | added worker_node to metadata from /scratch/boinc/var/slot24/slots/0/workernode_map.json
[2026-03-04 04:13:40] 2026-03-04 03:12:53,409 | INFO     | this job has now completed (state=finished)
[2026-03-04 04:13:40] 2026-03-04 03:12:53,409 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-04 04:13:40] 2026-03-04 03:12:53,409 | INFO     | log transfer has been attempted: DONE
[2026-03-04 04:13:40] 2026-03-04 03:12:53,409 | INFO     | job 7036176029 has finished - writing final server update
[2026-03-04 04:13:40] 2026-03-04 03:12:53,409 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_1496181/.job.ad'
[2026-03-04 04:13:40] 2026-03-04 03:12:53,410 | INFO     | total number of processed events: 400 (read)
[2026-03-04 04:13:40] 2026-03-04 03:12:53,421 | INFO     | using path: /scratch/boinc/var/slot24/slots/0/PanDA_Pilot-7036176029/memory_monitor_summary.json (trf name=prmon)
[2026-03-04 04:13:40] 2026-03-04 03:12:53,422 | INFO     | extracted standard info from prmon json
[2026-03-04 04:13:40] 2026-03-04 03:12:53,422 | INFO     | extracted standard memory fields from prmon json
[2026-03-04 04:13:40] 2026-03-04 03:12:53,422 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-04 04:13:40] 2026-03-04 03:12:53,422 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-04 04:13:40] 2026-03-04 03:12:53,423 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-04 04:13:40] 2026-03-04 03:12:53,428 | INFO     | fitting pss+swap vs Time
[2026-03-04 04:13:40] 2026-03-04 03:12:53,429 | INFO     | sum of square deviations: 11867638328.0
[2026-03-04 04:13:40] 2026-03-04 03:12:53,431 | INFO     | sum of deviations: 28652926527.000008
[2026-03-04 04:13:40] 2026-03-04 03:12:53,432 | INFO     | mean x: 1772583672.0
[2026-03-04 04:13:40] 2026-03-04 03:12:53,432 | INFO     | mean y: 2334918.1928783385
[2026-03-04 04:13:40] 2026-03-04 03:12:53,432 | INFO     | intersect: -4277346372.4767914
[2026-03-04 04:13:40] 2026-03-04 03:12:53,432 | INFO     | chi2: 1.314484781872439
[2026-03-04 04:13:40] 2026-03-04 03:12:53,433 | INFO     | sum of square deviations: 11347200663.0
[2026-03-04 04:13:40] 2026-03-04 03:12:53,436 | INFO     | sum of deviations: 28154974346.49999
[2026-03-04 04:13:40] 2026-03-04 03:12:53,436 | INFO     | mean x: 1772583519.5
[2026-03-04 04:13:40] 2026-03-04 03:12:53,436 | INFO     | mean y: 2334772.237951807
[2026-03-04 04:13:40] 2026-03-04 03:12:53,436 | INFO     | intersect: -4395846329.933252
[2026-03-04 04:13:40] 2026-03-04 03:12:53,436 | INFO     | chi2: 1.314775186422707
[2026-03-04 04:13:40] 2026-03-04 03:12:53,436 | INFO     | current chi2=1.314775186422707 (change=-0.02209265213815589 %)
[2026-03-04 04:13:40] 2026-03-04 03:12:53,437 | INFO     | right removable region: 331
[2026-03-04 04:13:40] 2026-03-04 03:12:53,437 | INFO     | sum of square deviations: 11347200663.0
[2026-03-04 04:13:40] 2026-03-04 03:12:53,440 | INFO     | sum of deviations: -13014096026.500002
[2026-03-04 04:13:40] 2026-03-04 03:12:53,440 | INFO     | mean x: 1772583824.5
[2026-03-04 04:13:40] 2026-03-04 03:12:53,440 | INFO     | mean y: 2347029.0391566264
[2026-03-04 04:13:40] 2026-03-04 03:12:53,440 | INFO     | intersect: 2035322102.995829
[2026-03-04 04:13:40] 2026-03-04 03:12:53,440 | INFO     | chi2: 0.03632195941156832
[2026-03-04 04:13:40] 2026-03-04 03:12:53,441 | INFO     | current chi2=0.03632195941156832 (change=97.23679118142175 %)
[2026-03-04 04:13:40] 2026-03-04 03:12:53,441 | INFO     | sum of square deviations: 10842205148.0
[2026-03-04 04:13:40] 2026-03-04 03:12:53,444 | INFO     | sum of deviations: -9966270645.999998
[2026-03-04 04:13:40] 2026-03-04 03:12:53,444 | INFO     | mean x: 1772583977.0
[2026-03-04 04:13:40] 2026-03-04 03:12:53,444 | INFO     | mean y: 2346101.7737003057
[2026-03-04 04:13:40] 2026-03-04 03:12:53,444 | INFO     | intersect: 1631724204.880686
[2026-03-04 04:13:40] 2026-03-04 03:12:53,444 | INFO     | chi2: 0.030868029015922824
[2026-03-04 04:13:40] 2026-03-04 03:12:53,444 | INFO     | current chi2=0.030868029015922824 (change=15.015518116317411 %)
[2026-03-04 04:13:40] 2026-03-04 03:12:53,445 | INFO     | left removable region: 20
[2026-03-04 04:13:40] 2026-03-04 03:12:53,445 | INFO     | sum of square deviations: 9327281860.0
[2026-03-04 04:13:40] 2026-03-04 03:12:53,447 | INFO     | sum of deviations: -1512133331.0000045
[2026-03-04 04:13:40] 2026-03-04 03:12:53,447 | INFO     | mean x: 1772584099.0
[2026-03-04 04:13:40] 2026-03-04 03:12:53,448 | INFO     | mean y: 2343375.61414791
[2026-03-04 04:13:40] 2026-03-04 03:12:53,448 | INFO     | intersect: 289713644.7161596
[2026-03-04 04:13:40] 2026-03-04 03:12:53,448 | INFO     | chi2: 0.018780842217397065
[2026-03-04 04:13:40] 2026-03-04 03:12:53,448 | INFO     | current memory leak: -0.16 B/s (using 311 data points, chi2=0.02)
[2026-03-04 04:13:40] 2026-03-04 03:12:53,449 | INFO     | could have reported an average CPU frequency of 2533 MHz (15 samples)
[2026-03-04 04:13:40] 2026-03-04 03:12:53,449 | INFO     | ..............................
[2026-03-04 04:13:40] 2026-03-04 03:12:53,449 | INFO     | . Timing measurements:
[2026-03-04 04:13:40] 2026-03-04 03:12:53,449 | INFO     | . get job = 0 s
[2026-03-04 04:13:40] 2026-03-04 03:12:53,449 | INFO     | . initial setup = 6 s
[2026-03-04 04:13:40] 2026-03-04 03:12:53,449 | INFO     | . payload setup = 6 s
[2026-03-04 04:13:40] 2026-03-04 03:12:53,449 | INFO     | . stage-in = 0 s
[2026-03-04 04:13:40] 2026-03-04 03:12:53,450 | INFO     | . payload execution = 20546 s
[2026-03-04 04:13:40] 2026-03-04 03:12:53,450 | INFO     | . stage-out = 1 s
[2026-03-04 04:13:40] 2026-03-04 03:12:53,450 | INFO     | . log creation = 0 s
[2026-03-04 04:13:40] 2026-03-04 03:12:53,450 | INFO     | ..............................
[2026-03-04 04:13:40] 2026-03-04 03:12:53,538 | INFO     | 
[2026-03-04 04:13:40] 2026-03-04 03:12:53,539 | INFO     | job summary report
[2026-03-04 04:13:40] 2026-03-04 03:12:53,539 | INFO     | --------------------------------------------------
[2026-03-04 04:13:40] 2026-03-04 03:12:53,539 | INFO     | PanDA job id: 7036176029
[2026-03-04 04:13:40] 2026-03-04 03:12:53,539 | INFO     | task id: 48851614
[2026-03-04 04:13:40] 2026-03-04 03:12:53,539 | INFO     | errors: (none)
[2026-03-04 04:13:40] 2026-03-04 03:12:53,539 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-04 04:13:40] 2026-03-04 03:12:53,539 | INFO     | pilot state: finished 
[2026-03-04 04:13:40] 2026-03-04 03:12:53,539 | INFO     | transexitcode: 0
[2026-03-04 04:13:40] 2026-03-04 03:12:53,539 | INFO     | exeerrorcode: 0
[2026-03-04 04:13:40] 2026-03-04 03:12:53,540 | INFO     | exeerrordiag: 
[2026-03-04 04:13:40] 2026-03-04 03:12:53,540 | INFO     | exitcode: 0
[2026-03-04 04:13:40] 2026-03-04 03:12:53,540 | INFO     | exitmsg: OK
[2026-03-04 04:13:40] 2026-03-04 03:12:53,540 | INFO     | cpuconsumptiontime: 79687 s
[2026-03-04 04:13:40] 2026-03-04 03:12:53,540 | INFO     | nevents: 400
[2026-03-04 04:13:40] 2026-03-04 03:12:53,540 | INFO     | neventsw: 0
[2026-03-04 04:13:40] 2026-03-04 03:12:53,540 | INFO     | pid: 2058750
[2026-03-04 04:13:40] 2026-03-04 03:12:53,540 | INFO     | pgrp: 2058750
[2026-03-04 04:13:40] 2026-03-04 03:12:53,540 | INFO     | corecount: 4
[2026-03-04 04:13:40] 2026-03-04 03:12:53,540 | INFO     | event service: False
[2026-03-04 04:13:40] 2026-03-04 03:12:53,540 | INFO     | sizes: {0: 2286723, 1: 2287184, 11: 2287184, 20557: 2320625, 20560: 2329701, 20561: 2329839}
[2026-03-04 04:13:40] 2026-03-04 03:12:53,540 | INFO     | --------------------------------------------------
[2026-03-04 04:13:40] 2026-03-04 03:12:53,540 | INFO     | 
[2026-03-04 04:13:40] 2026-03-04 03:12:53,541 | INFO     | executing command: ls -lF /scratch/boinc/var/slot24/slots/0
[2026-03-04 04:13:40] 2026-03-04 03:12:53,562 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-04 04:13:40] 2026-03-04 03:12:53,562 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-04 04:13:40] 2026-03-04 03:12:53,562 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-04 04:13:40] 2026-03-04 03:12:53,562 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-04 04:13:40] 2026-03-04 03:12:53,562 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-04 04:13:40] 2026-03-04 03:12:53,562 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-04 04:13:40] 2026-03-04 03:12:53,562 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-04 04:13:40] 2026-03-04 03:12:53,562 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-04 04:13:40] 2026-03-04 03:12:53,563 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-04 04:13:40] 2026-03-04 03:12:53,563 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-04 04:13:40] 2026-03-04 03:12:53,563 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-04 04:13:40] 2026-03-04 03:12:53,563 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-04 04:13:40] 2026-03-04 03:12:53,563 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-04 04:13:40] 2026-03-04 03:12:53,563 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-04 04:13:40] 2026-03-04 03:12:53,563 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-04 04:13:40] 2026-03-04 03:12:53,563 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-04 04:13:40] 2026-03-04 03:12:53,563 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-04 04:13:40] 2026-03-04 03:12:53,563 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-04 04:13:40] 2026-03-04 03:12:53,563 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-04 04:13:40] 2026-03-04 03:12:53,563 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-04 04:13:40] 2026-03-04 03:12:53,564 | INFO     | job 7036176029 has completed (purged errors)
[2026-03-04 04:13:40] 2026-03-04 03:12:53,564 | INFO     | overall cleanup function is called
[2026-03-04 04:13:40] 2026-03-04 03:12:54,571 | INFO     | --- collectZombieJob: --- 10, [2058750]
[2026-03-04 04:13:40] 2026-03-04 03:12:54,571 | INFO     | zombie collector waiting for pid 2058750
[2026-03-04 04:13:40] 2026-03-04 03:12:54,571 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-04 04:13:40] 2026-03-04 03:12:54,571 | INFO     | collected zombie processes
[2026-03-04 04:13:40] 2026-03-04 03:12:54,572 | INFO     | will attempt to kill all subprocesses of pid=2058750
[2026-03-04 04:13:40] 2026-03-04 03:12:54,877 | INFO     | process IDs to be killed: [2058750] (in reverse order)
[2026-03-04 04:13:40] 2026-03-04 03:12:54,979 | WARNING  | found no corresponding commands to process id(s)
[2026-03-04 04:13:40] 2026-03-04 03:12:54,980 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-04 04:13:40] 2026-03-04 03:12:54,989 | INFO     | did not find any defunct processes belonging to 2058750
[2026-03-04 04:13:40] 2026-03-04 03:12:54,997 | INFO     | did not find any defunct processes belonging to 2058750
[2026-03-04 04:13:40] 2026-03-04 03:12:54,997 | INFO     | ready for new job
[2026-03-04 04:13:40] 2026-03-04 03:12:54,997 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-04 04:13:40] 2026-03-04 03:12:55,000 | INFO     | **************************************
[2026-03-04 04:13:40] 2026-03-04 03:12:55,000 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-04 04:13:40] 2026-03-04 03:12:55,000 | INFO     | **************************************
[2026-03-04 04:13:40] 2026-03-04 03:12:55,000 | INFO     | 
[2026-03-04 04:13:40] 2026-03-04 03:12:55,004 | INFO     | architecture information:
[2026-03-04 04:13:40] 2026-03-04 03:12:55,004 | INFO     | executing command: cat /etc/os-release
[2026-03-04 04:13:40] 2026-03-04 03:12:55,019 | INFO     | cat /etc/os-release:
[2026-03-04 04:13:40] NAME="CentOS Linux"
[2026-03-04 04:13:40] VERSION="7 (Core)"
[2026-03-04 04:13:40] ID="centos"
[2026-03-04 04:13:40] ID_LIKE="rhel fedora"
[2026-03-04 04:13:40] VERSION_ID="7"
[2026-03-04 04:13:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-04 04:13:40] ANSI_COLOR="0;31"
[2026-03-04 04:13:40] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-04 04:13:40] HOME_URL="https://www.centos.org/"
[2026-03-04 04:13:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-04 04:13:40] 
[2026-03-04 04:13:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-04 04:13:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-04 04:13:40] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-04 04:13:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-04 04:13:40] 
[2026-03-04 04:13:40] 2026-03-04 03:12:55,020 | INFO     | **************************************
[2026-03-04 04:13:40] 2026-03-04 03:12:55,522 | INFO     | executing command: df -mP /scratch/boinc/var/slot24/slots/0
[2026-03-04 04:13:40] 2026-03-04 03:12:55,537 | INFO     | sufficient remaining disk space (671495487488 B)
[2026-03-04 04:13:40] 2026-03-04 03:12:55,538 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-04 04:13:40] 2026-03-04 03:12:55,538 | INFO     | current server update state: UPDATING_FINAL
[2026-03-04 04:13:40] 2026-03-04 03:12:55,538 | INFO     | update_server=False
[2026-03-04 04:13:40] 2026-03-04 03:12:55,538 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-04 04:13:40] 2026-03-04 03:12:55,538 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-04 04:13:40] 2026-03-04 03:12:55,539 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-04 04:13:40] 2026-03-04 03:12:55,789 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-03-04 04:13:40] 2026-03-04 03:12:55,789 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-03-04 04:13:40] 2026-03-04 03:12:55,789 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-04 04:13:40] 2026-03-04 03:12:55,790 | INFO     | will abort loop
[2026-03-04 04:13:40] 2026-03-04 03:12:55,931 | INFO     | all data control threads have been joined
[2026-03-04 04:13:40] 2026-03-04 03:12:56,543 | INFO     | [job] queue monitor thread has finished
[2026-03-04 04:13:40] 2026-03-04 03:12:56,544 | INFO     | [job] retrieve thread has finished
[2026-03-04 04:13:40] 2026-03-04 03:12:56,709 | INFO     | [payload] validate_post thread has finished
[2026-03-04 04:13:40] 2026-03-04 03:12:56,746 | INFO     | all payload control threads have been joined
[2026-03-04 04:13:40] 2026-03-04 03:12:56,794 | INFO     | [job] job monitor thread has finished
[2026-03-04 04:13:40] 2026-03-04 03:12:56,813 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-04 04:13:40] 2026-03-04 03:12:56,937 | INFO     | [data] control thread has finished
[2026-03-04 04:13:40] 2026-03-04 03:12:56,939 | INFO     | all job control threads have been joined
[2026-03-04 04:13:40] 2026-03-04 03:12:56,998 | INFO     | [job] validate thread has finished
[2026-03-04 04:13:40] 2026-03-04 03:12:57,053 | INFO     | [payload] failed_post thread has finished
[2026-03-04 04:13:40] 2026-03-04 03:12:57,265 | INFO     | [job] create_data_payload thread has finished
[2026-03-04 04:13:40] 2026-03-04 03:12:57,353 | INFO     | [payload] validate_pre thread has finished
[2026-03-04 04:13:40] 2026-03-04 03:12:57,544 | INFO     | [data] copytool_out thread has finished
[2026-03-04 04:13:40] 2026-03-04 03:12:57,717 | INFO     | [payload] execute_payloads thread has finished
[2026-03-04 04:13:40] 2026-03-04 03:12:57,752 | INFO     | [payload] control thread has finished
[2026-03-04 04:13:40] 2026-03-04 03:12:57,914 | INFO     | [data] copytool_in thread has finished
[2026-03-04 04:13:40] 2026-03-04 03:12:57,944 | INFO     | [job] control thread has finished
[2026-03-04 04:13:40] 2026-03-04 03:12:58,031 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-04 04:13:40] 2026-03-04 03:13:02,037 | INFO     | [data] queue_monitor thread has finished
[2026-03-04 04:13:40] 2026-03-04 03:13:25,295 | INFO     | PID=2053749 has CPU usage=6.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-04 04:13:40] 2026-03-04 03:13:25,295 | INFO     | .. there are 12 such processes running
[2026-03-04 04:13:40] 2026-03-04 03:13:25,295 | INFO     | found 0 job(s) in 20 queues
[2026-03-04 04:13:40] 2026-03-04 03:13:25,295 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-04 04:13:40] 2026-03-04 03:13:25,295 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-04 04:13:40] 2026-03-04 03:13:34,366 | INFO     | [monitor] cgroup control has ended
[2026-03-04 04:13:40] 2026-03-04 03:13:35,605 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23265247856448)>', '<ExcThread(monitor, started 23265008690944)>']
[2026-03-04 04:13:40] 2026-03-04 03:13:36,349 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-04 04:13:40] 2026-03-04 03:13:36,350 | INFO     | [monitor] control thread has ended
[2026-03-04 04:13:40] 2026-03-04 03:13:40,631 | INFO     | all workflow threads have been joined
[2026-03-04 04:13:40] 2026-03-04 03:13:40,631 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-04 04:13:40] 2026-03-04 03:13:40,631 | INFO     | traces error code: 0
[2026-03-04 04:13:40] 2026-03-04 03:13:40,631 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-04 04:13:40] 2026-03-04 03:13:40,797 [wrapper] ==== pilot stdout END ====
[2026-03-04 04:13:40] 2026-03-04 03:13:40,800 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-04 04:13:40] 2026-03-04 03:13:40,802 [wrapper] pilotpid: 2053749
[2026-03-04 04:13:40] 2026-03-04 03:13:40,805 [wrapper] Pilot exit status: 0
[2026-03-04 04:13:40] 2026-03-04 03:13:40,816 [wrapper] pandaids: 7036176029
[2026-03-04 04:13:40] 2026-03-04 03:13:40,881 [wrapper] cleanup supervisor_pilot 2363542 2053750
[2026-03-04 04:13:40] 2026-03-04 03:13:40,885 [wrapper] Test setup, not cleaning
[2026-03-04 04:13:40] 2026-03-04 03:13:40,887 [wrapper] apfmon messages muted
[2026-03-04 04:13:40] 2026-03-04 03:13:40,890 [wrapper] ==== wrapper stdout END ====
[2026-03-04 04:13:40] 2026-03-04 03:13:40,893 [wrapper] ==== wrapper stderr END ====
[2026-03-04 04:13:40]  *** Error codes and diagnostics ***
[2026-03-04 04:13:40]     "exeErrorCode": 0,
[2026-03-04 04:13:40]     "exeErrorDiag": "",
[2026-03-04 04:13:40]     "pilotErrorCode": 0,
[2026-03-04 04:13:40]     "pilotErrorDiag": "",
[2026-03-04 04:13:40]  *** Listing of results directory ***
[2026-03-04 04:13:40] total 414412
[2026-03-04 04:13:40] -rw-r--r-- 1 boinc boinc    584627 Mar  3 04:05 pilot3.tar.gz
[2026-03-04 04:13:40] -rwx------ 1 boinc boinc     36322 Mar  3 04:08 runpilot2-wrapper.sh
[2026-03-04 04:13:40] -rw-r--r-- 1 boinc boinc      5111 Mar  3 04:10 queuedata.json
[2026-03-04 04:13:40] -rw-r--r-- 1 boinc boinc       100 Mar  3 22:29 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-04 04:13:40] -rwxr-xr-x 1 boinc boinc      7986 Mar  3 22:29 run_atlas
[2026-03-04 04:13:40] -rw-r--r-- 1 boinc boinc       105 Mar  3 22:29 job.xml
[2026-03-04 04:13:40] -rw-r--r-- 1 boinc boinc      6639 Mar  3 22:29 init_data.xml
[2026-03-04 04:13:40] -rw-r--r-- 2 boinc boinc 220350006 Mar  3 22:29 EVNT.48460512._000003.pool.root.1
[2026-03-04 04:13:40] -rw-r--r-- 2 boinc boinc     15845 Mar  3 22:29 start_atlas.sh
[2026-03-04 04:13:40] drwxrwx--x 2 boinc boinc      4096 Mar  3 22:29 shared
[2026-03-04 04:13:40] -rw-r--r-- 2 boinc boinc    597949 Mar  3 22:29 input.tar.gz
[2026-03-04 04:13:40] -rw-r--r-- 1 boinc boinc         0 Mar  3 22:29 boinc_lockfile
[2026-03-04 04:13:40] -rw-r--r-- 1 boinc boinc      2615 Mar  3 22:29 pandaJob.out
[2026-03-04 04:13:40] -rw------- 1 boinc boinc    998484 Mar  3 22:29 agis_schedconf.cvmfs.json
[2026-03-04 04:13:40] -rw------- 1 boinc boinc       444 Mar  3 22:30 workernode_map.json
[2026-03-04 04:13:40] drwx------ 5 boinc boinc      4096 Mar  3 22:30 pilot3
[2026-03-04 04:13:40] -rw------- 1 boinc boinc 193324678 Mar  4 04:12 HITS.48851614._000053.pool.root.1
[2026-03-04 04:13:40] -rw------- 1 boinc boinc        95 Mar  4 04:12 pilot_heartbeat.json
[2026-03-04 04:13:40] -rw-r--r-- 1 boinc boinc       530 Mar  4 04:12 boinc_task_state.xml
[2026-03-04 04:13:40] -rw------- 1 boinc boinc      1031 Mar  4 04:12 memory_monitor_summary.json
[2026-03-04 04:13:40] -rw------- 1 boinc boinc   1516092 Mar  4 04:12 agis_ddmendpoints.agis.ALL.json
[2026-03-04 04:13:40] -rw------- 1 boinc boinc    479405 Mar  4 04:12 log.48851614._000053.job.log.tgz.1
[2026-03-04 04:13:40] -rw------- 1 boinc boinc      6375 Mar  4 04:12 heartbeat.json
[2026-03-04 04:13:40] -rw-r--r-- 1 boinc boinc        28 Mar  4 04:13 wrapper_checkpoint.txt
[2026-03-04 04:13:40] -rw-r--r-- 1 boinc boinc      8192 Mar  4 04:13 boinc_mmap_file
[2026-03-04 04:13:40] -rw------- 1 boinc boinc      5016 Mar  4 04:13 pilotlog.txt
[2026-03-04 04:13:40] -rw------- 1 boinc boinc   2892883 Mar  4 04:13 log.48851614._000053.job.log.1
[2026-03-04 04:13:40] -rw------- 1 boinc boinc       357 Mar  4 04:13 output.list
[2026-03-04 04:13:40] -rw-r--r-- 1 boinc boinc       620 Mar  4 04:13 runtime_log
[2026-03-04 04:13:40] -rw------- 1 boinc boinc   3389440 Mar  4 04:13 result.tar.gz
[2026-03-04 04:13:40] -rw-r--r-- 1 boinc boinc      9205 Mar  4 04:13 runtime_log.err
[2026-03-04 04:13:40] -rw------- 1 boinc boinc       665 Mar  4 04:13 hzGLDm2IVH9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmeWFLDmX3az7m.diag
[2026-03-04 04:13:40] -rw-r--r-- 1 boinc boinc     21152 Mar  4 04:13 stderr.txt
[2026-03-04 04:13:40] HITS file was successfully produced:
[2026-03-04 04:13:40] -rw------- 1 boinc boinc 193324678 Mar  4 04:12 shared/HITS.pool.root.1
[2026-03-04 04:13:40]  *** Contents of shared directory: ***
[2026-03-04 04:13:40] total 407904
[2026-03-04 04:13:40] -rw-r--r-- 2 boinc boinc 220350006 Mar  3 22:29 ATLAS.root_0
[2026-03-04 04:13:40] -rw-r--r-- 2 boinc boinc     15845 Mar  3 22:29 start_atlas.sh
[2026-03-04 04:13:40] -rw-r--r-- 2 boinc boinc    597949 Mar  3 22:29 input.tar.gz
[2026-03-04 04:13:40] -rw------- 1 boinc boinc 193324678 Mar  4 04:12 HITS.pool.root.1
[2026-03-04 04:13:40] -rw------- 1 boinc boinc   3389440 Mar  4 04:13 result.tar.gz
04:13:42 (2049678): run_atlas exited; CPU time 80525.592164
04:13:42 (2049678): called boinc_finish(0)

</stderr_txt>
]]>

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