Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
06:28:27 (1259557): wrapper (7.7.26015): starting
06:28:27 (1259557): wrapper: running run_atlas (--nthreads 4)
[2026-03-04 06:28:27] Arguments: --nthreads 4
[2026-03-04 06:28:27] Threads: 4
[2026-03-04 06:28:27] Checking for CVMFS
[2026-03-04 06:28:27] No cvmfs_config command found, will try listing directly
[2026-03-04 06:28:27] CVMFS is ok
[2026-03-04 06:28:27] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-04 06:28:27] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-04 06:28:27] Further information can be found at the LHC@home message board.
[2026-03-04 06:28:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-04 06:28:27] Checking for apptainer binary...
[2026-03-04 06:28:27] which: no apptainer in ((null))
[2026-03-04 06:28:27] apptainer is not installed, using version from CVMFS
[2026-03-04 06:28:27] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-04 06:28:28] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot92/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut12.grid.cesnet.cz
[2026-03-04 06:28:28] apptainer works
[2026-03-04 06:28:28] Set ATHENA_PROC_NUMBER=4
[2026-03-04 06:28:28] Set ATHENA_CORE_NUMBER=4
[2026-03-04 06:28:28] Starting ATLAS job with PandaID=7036175811
[2026-03-04 06:28:28] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot92/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-04 09:36:11]  *** The last 200 lines of the pilot log: ***
[2026-03-04 09:36:11] 2026-03-04 08:35:10,476 | INFO     | extracted standard memory fields from prmon json
[2026-03-04 09:36:11] 2026-03-04 08:35:10,476 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-04 09:36:11] 2026-03-04 08:35:10,476 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-04 09:36:11] 2026-03-04 08:35:10,476 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-04 09:36:11] 2026-03-04 08:35:10,479 | INFO     | fitting pss+swap vs Time
[2026-03-04 09:36:11] 2026-03-04 08:35:10,480 | INFO     | sum of square deviations: 1900284932.0
[2026-03-04 09:36:11] 2026-03-04 08:35:10,481 | INFO     | sum of deviations: 1504925510.0000167
[2026-03-04 09:36:11] 2026-03-04 08:35:10,481 | INFO     | mean x: 1772607706.0
[2026-03-04 09:36:11] 2026-03-04 08:35:10,481 | INFO     | mean y: 2353979.37704918
[2026-03-04 09:36:11] 2026-03-04 08:35:10,481 | INFO     | intersect: -1401457896.9684556
[2026-03-04 09:36:11] 2026-03-04 08:35:10,481 | INFO     | chi2: 1.3145663481315495
[2026-03-04 09:36:11] 2026-03-04 08:35:10,482 | INFO     | sum of square deviations: 1748737904.5
[2026-03-04 09:36:11] 2026-03-04 08:35:10,483 | INFO     | sum of deviations: 1573726342.4999998
[2026-03-04 09:36:11] 2026-03-04 08:35:10,483 | INFO     | mean x: 1772607553.5
[2026-03-04 09:36:11] 2026-03-04 08:35:10,483 | INFO     | mean y: 2354048.6235955055
[2026-03-04 09:36:11] 2026-03-04 08:35:10,483 | INFO     | intersect: -1592853097.44386
[2026-03-04 09:36:11] 2026-03-04 08:35:10,483 | INFO     | chi2: 1.3149458647262025
[2026-03-04 09:36:11] 2026-03-04 08:35:10,483 | INFO     | current chi2=1.3149458647262025 (change=-0.028870098127217823 %)
[2026-03-04 09:36:11] 2026-03-04 08:35:10,483 | INFO     | right removable region: 177
[2026-03-04 09:36:11] 2026-03-04 08:35:10,484 | INFO     | sum of square deviations: 1748737904.5
[2026-03-04 09:36:11] 2026-03-04 08:35:10,485 | INFO     | sum of deviations: -19489749947.500004
[2026-03-04 09:36:11] 2026-03-04 08:35:10,485 | INFO     | mean x: 1772607858.5
[2026-03-04 09:36:11] 2026-03-04 08:35:10,485 | INFO     | mean y: 2374761.3988764044
[2026-03-04 09:36:11] 2026-03-04 08:35:10,485 | INFO     | intersect: 19758156247.142082
[2026-03-04 09:36:11] 2026-03-04 08:35:10,485 | INFO     | chi2: 0.049987532443717377
[2026-03-04 09:36:11] 2026-03-04 08:35:10,486 | INFO     | current chi2=0.049987532443717377 (change=96.19741274263053 %)
[2026-03-04 09:36:11] 2026-03-04 08:35:10,486 | INFO     | sum of square deviations: 1605470102.0
[2026-03-04 09:36:11] 2026-03-04 08:35:10,487 | INFO     | sum of deviations: -16885532183.000004
[2026-03-04 09:36:11] 2026-03-04 08:35:10,487 | INFO     | mean x: 1772608011.0
[2026-03-04 09:36:11] 2026-03-04 08:35:10,487 | INFO     | mean y: 2371966.578034682
[2026-03-04 09:36:11] 2026-03-04 08:35:10,487 | INFO     | intersect: 18645777147.58845
[2026-03-04 09:36:11] 2026-03-04 08:35:10,487 | INFO     | chi2: 0.04534571090227441
[2026-03-04 09:36:11] 2026-03-04 08:35:10,487 | INFO     | current chi2=0.04534571090227441 (change=9.28595854710241 %)
[2026-03-04 09:36:11] 2026-03-04 08:35:10,487 | INFO     | left removable region: 20
[2026-03-04 09:36:11] 2026-03-04 08:35:10,488 | INFO     | sum of square deviations: 1199940638.0
[2026-03-04 09:36:11] 2026-03-04 08:35:10,489 | INFO     | sum of deviations: -8584569406.000003
[2026-03-04 09:36:11] 2026-03-04 08:35:10,489 | INFO     | mean x: 1772608133.0
[2026-03-04 09:36:11] 2026-03-04 08:35:10,489 | INFO     | mean y: 2363111.312101911
[2026-03-04 09:36:11] 2026-03-04 08:35:10,489 | INFO     | intersect: 12683888401.381145
[2026-03-04 09:36:11] 2026-03-04 08:35:10,489 | INFO     | chi2: 0.02343977430975901
[2026-03-04 09:36:11] 2026-03-04 08:35:10,489 | INFO     | current memory leak: -7.15 B/s (using 157 data points, chi2=0.02)
[2026-03-04 09:36:11] 2026-03-04 08:35:10,489 | INFO     | could have reported an average CPU frequency of 2766 MHz (10 samples)
[2026-03-04 09:36:11] 2026-03-04 08:35:10,490 | INFO     | ..............................
[2026-03-04 09:36:11] 2026-03-04 08:35:10,490 | INFO     | . Timing measurements:
[2026-03-04 09:36:11] 2026-03-04 08:35:10,490 | INFO     | . get job = 0 s
[2026-03-04 09:36:11] 2026-03-04 08:35:10,490 | INFO     | . initial setup = 7 s
[2026-03-04 09:36:11] 2026-03-04 08:35:10,490 | INFO     | . payload setup = 8 s
[2026-03-04 09:36:11] 2026-03-04 08:35:10,490 | INFO     | . stage-in = 0 s
[2026-03-04 09:36:11] 2026-03-04 08:35:10,490 | INFO     | . payload execution = 11154 s
[2026-03-04 09:36:11] 2026-03-04 08:35:10,490 | INFO     | . stage-out = 1 s
[2026-03-04 09:36:11] 2026-03-04 08:35:10,490 | INFO     | . log creation = 0 s
[2026-03-04 09:36:11] 2026-03-04 08:35:10,490 | INFO     | ..............................
[2026-03-04 09:36:11] 2026-03-04 08:35:10,579 | INFO     | 
[2026-03-04 09:36:11] 2026-03-04 08:35:10,579 | INFO     | job summary report
[2026-03-04 09:36:11] 2026-03-04 08:35:10,579 | INFO     | --------------------------------------------------
[2026-03-04 09:36:11] 2026-03-04 08:35:10,580 | INFO     | PanDA job id: 7036175811
[2026-03-04 09:36:11] 2026-03-04 08:35:10,580 | INFO     | task id: 48851585
[2026-03-04 09:36:11] 2026-03-04 08:35:10,580 | INFO     | errors: (none)
[2026-03-04 09:36:11] 2026-03-04 08:35:10,580 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-04 09:36:11] 2026-03-04 08:35:10,580 | INFO     | pilot state: finished 
[2026-03-04 09:36:11] 2026-03-04 08:35:10,580 | INFO     | transexitcode: 0
[2026-03-04 09:36:11] 2026-03-04 08:35:10,580 | INFO     | exeerrorcode: 0
[2026-03-04 09:36:11] 2026-03-04 08:35:10,580 | INFO     | exeerrordiag: 
[2026-03-04 09:36:11] 2026-03-04 08:35:10,580 | INFO     | exitcode: 0
[2026-03-04 09:36:11] 2026-03-04 08:35:10,580 | INFO     | exitmsg: OK
[2026-03-04 09:36:11] 2026-03-04 08:35:10,580 | INFO     | cpuconsumptiontime: 42985 s
[2026-03-04 09:36:11] 2026-03-04 08:35:10,580 | INFO     | nevents: 400
[2026-03-04 09:36:11] 2026-03-04 08:35:10,580 | INFO     | neventsw: 0
[2026-03-04 09:36:11] 2026-03-04 08:35:10,580 | INFO     | pid: 1269046
[2026-03-04 09:36:11] 2026-03-04 08:35:10,580 | INFO     | pgrp: 1269046
[2026-03-04 09:36:11] 2026-03-04 08:35:10,581 | INFO     | corecount: 4
[2026-03-04 09:36:11] 2026-03-04 08:35:10,581 | INFO     | event service: False
[2026-03-04 09:36:11] 2026-03-04 08:35:10,581 | INFO     | sizes: {0: 2286075, 1: 2287204, 12: 2287204, 11166: 2316547, 11169: 2325623, 11170: 2325761}
[2026-03-04 09:36:11] 2026-03-04 08:35:10,581 | INFO     | --------------------------------------------------
[2026-03-04 09:36:11] 2026-03-04 08:35:10,581 | INFO     | 
[2026-03-04 09:36:11] 2026-03-04 08:35:10,581 | INFO     | executing command: ls -lF /scratch/boinc/var/slot92/slots/0
[2026-03-04 09:36:11] 2026-03-04 08:35:10,612 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-04 09:36:11] 2026-03-04 08:35:10,613 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-04 09:36:11] 2026-03-04 08:35:10,613 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-04 09:36:11] 2026-03-04 08:35:10,613 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-04 09:36:11] 2026-03-04 08:35:10,613 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-04 09:36:11] 2026-03-04 08:35:10,613 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-04 09:36:11] 2026-03-04 08:35:10,613 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-04 09:36:11] 2026-03-04 08:35:10,613 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-04 09:36:11] 2026-03-04 08:35:10,613 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-04 09:36:11] 2026-03-04 08:35:10,613 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-04 09:36:11] 2026-03-04 08:35:10,613 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-04 09:36:11] 2026-03-04 08:35:10,614 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-04 09:36:11] 2026-03-04 08:35:10,614 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-04 09:36:11] 2026-03-04 08:35:10,614 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-04 09:36:11] 2026-03-04 08:35:10,614 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-04 09:36:11] 2026-03-04 08:35:10,614 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-04 09:36:11] 2026-03-04 08:35:10,614 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-04 09:36:11] 2026-03-04 08:35:10,614 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-04 09:36:11] 2026-03-04 08:35:10,614 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-04 09:36:11] 2026-03-04 08:35:10,614 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-04 09:36:11] 2026-03-04 08:35:10,615 | INFO     | job 7036175811 has completed (purged errors)
[2026-03-04 09:36:11] 2026-03-04 08:35:10,615 | INFO     | overall cleanup function is called
[2026-03-04 09:36:11] 2026-03-04 08:35:11,624 | INFO     | --- collectZombieJob: --- 10, [1269046]
[2026-03-04 09:36:11] 2026-03-04 08:35:11,624 | INFO     | zombie collector waiting for pid 1269046
[2026-03-04 09:36:11] 2026-03-04 08:35:11,625 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-04 09:36:11] 2026-03-04 08:35:11,625 | INFO     | collected zombie processes
[2026-03-04 09:36:11] 2026-03-04 08:35:11,625 | INFO     | will attempt to kill all subprocesses of pid=1269046
[2026-03-04 09:36:11] 2026-03-04 08:35:13,221 | INFO     | process IDs to be killed: [1269046] (in reverse order)
[2026-03-04 09:36:11] 2026-03-04 08:35:13,381 | WARNING  | process 1269046 can no longer be monitored (due to stat problems) - aborting
[2026-03-04 09:36:11] 2026-03-04 08:35:13,461 | WARNING  | found no corresponding commands to process id(s)
[2026-03-04 09:36:11] 2026-03-04 08:35:13,462 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-04 09:36:11] 2026-03-04 08:35:13,537 | INFO     | did not find any defunct processes belonging to 1269046
[2026-03-04 09:36:11] 2026-03-04 08:35:13,606 | INFO     | did not find any defunct processes belonging to 1269046
[2026-03-04 09:36:11] 2026-03-04 08:35:13,607 | INFO     | ready for new job
[2026-03-04 09:36:11] 2026-03-04 08:35:13,607 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-04 09:36:11] 2026-03-04 08:35:13,610 | INFO     | **************************************
[2026-03-04 09:36:11] 2026-03-04 08:35:13,610 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-04 09:36:11] 2026-03-04 08:35:13,610 | INFO     | **************************************
[2026-03-04 09:36:11] 2026-03-04 08:35:13,610 | INFO     | 
[2026-03-04 09:36:11] 2026-03-04 08:35:13,623 | INFO     | architecture information:
[2026-03-04 09:36:11] 2026-03-04 08:35:13,624 | INFO     | executing command: cat /etc/os-release
[2026-03-04 09:36:11] 2026-03-04 08:35:13,649 | INFO     | cat /etc/os-release:
[2026-03-04 09:36:11] NAME="CentOS Linux"
[2026-03-04 09:36:11] VERSION="7 (Core)"
[2026-03-04 09:36:11] ID="centos"
[2026-03-04 09:36:11] ID_LIKE="rhel fedora"
[2026-03-04 09:36:11] VERSION_ID="7"
[2026-03-04 09:36:11] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-04 09:36:11] ANSI_COLOR="0;31"
[2026-03-04 09:36:11] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-04 09:36:11] HOME_URL="https://www.centos.org/"
[2026-03-04 09:36:11] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-04 09:36:11] 
[2026-03-04 09:36:11] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-04 09:36:11] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-04 09:36:11] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-04 09:36:11] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-04 09:36:11] 
[2026-03-04 09:36:11] 2026-03-04 08:35:13,650 | INFO     | **************************************
[2026-03-04 09:36:11] 2026-03-04 08:35:13,870 | INFO     | using path: /scratch/boinc/var/slot92/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-04 09:36:11] 2026-03-04 08:35:13,870 | INFO     | using path: /scratch/boinc/var/slot92/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-04 09:36:11] 2026-03-04 08:35:13,871 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-03-04 09:36:11] 2026-03-04 08:35:13,871 | WARNING  | maxPSS not found in memory monitor output
[2026-03-04 09:36:11] 2026-03-04 08:35:13,871 | INFO     | skipping file size check of payload stdout file (/scratch/boinc/var/slot92/slots/0/PanDA_Pilot-7036175811/payload.stdout) since it has not been created yet
[2026-03-04 09:36:11] 2026-03-04 08:35:13,871 | INFO     | executing command: df -mP /scratch/boinc/var/slot92/slots/0
[2026-03-04 09:36:11] 2026-03-04 08:35:13,895 | INFO     | sufficient remaining disk space (3313306173440 B)
[2026-03-04 09:36:11] 2026-03-04 08:35:13,896 | WARNING  | skipping size check of workdir since it has not been created yet
[2026-03-04 09:36:11] 2026-03-04 08:35:13,896 | INFO     | output file size check: skipping output file /scratch/boinc/var/slot92/slots/0/PanDA_Pilot-7036175811/HITS.48851585._000060.pool.root.1 since it does not exist
[2026-03-04 09:36:11] 2026-03-04 08:35:14,153 | INFO     | executing command: df -mP /scratch/boinc/var/slot92/slots/0
[2026-03-04 09:36:11] 2026-03-04 08:35:14,178 | INFO     | sufficient remaining disk space (3313306173440 B)
[2026-03-04 09:36:11] 2026-03-04 08:35:14,179 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-04 09:36:11] 2026-03-04 08:35:14,179 | INFO     | current server update state: UPDATING_FINAL
[2026-03-04 09:36:11] 2026-03-04 08:35:14,179 | INFO     | update_server=False
[2026-03-04 09:36:11] 2026-03-04 08:35:14,179 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-04 09:36:11] 2026-03-04 08:35:14,447 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-04 09:36:11] 2026-03-04 08:35:14,531 | INFO     | number of running child processes to parent process 1269046: 1
[2026-03-04 09:36:11] 2026-03-04 08:35:14,532 | INFO     | maximum number of monitored processes: 6
[2026-03-04 09:36:11] 2026-03-04 08:35:14,532 | INFO     | aborting job monitoring since job object (job id=7036175811) has expired
[2026-03-04 09:36:11] 2026-03-04 08:35:14,532 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-04 09:36:11] 2026-03-04 08:35:14,532 | INFO     | will abort loop
[2026-03-04 09:36:11] 2026-03-04 08:35:14,560 | INFO     | all data control threads have been joined
[2026-03-04 09:36:11] 2026-03-04 08:35:15,042 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-04 09:36:11] 2026-03-04 08:35:15,185 | INFO     | [job] retrieve thread has finished
[2026-03-04 09:36:11] 2026-03-04 08:35:15,271 | INFO     | all payload control threads have been joined
[2026-03-04 09:36:11] 2026-03-04 08:35:15,384 | INFO     | all job control threads have been joined
[2026-03-04 09:36:11] 2026-03-04 08:35:15,443 | INFO     | [job] validate thread has finished
[2026-03-04 09:36:11] 2026-03-04 08:35:15,537 | INFO     | [job] job monitor thread has finished
[2026-03-04 09:36:11] 2026-03-04 08:35:15,565 | INFO     | [data] control thread has finished
[2026-03-04 09:36:11] 2026-03-04 08:35:15,585 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-04 09:36:11] 2026-03-04 08:35:15,710 | INFO     | [payload] validate_post thread has finished
[2026-03-04 09:36:11] 2026-03-04 08:35:15,760 | INFO     | [job] create_data_payload thread has finished
[2026-03-04 09:36:11] 2026-03-04 08:35:15,896 | INFO     | [payload] validate_pre thread has finished
[2026-03-04 09:36:11] 2026-03-04 08:35:16,153 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-04 09:36:11] 2026-03-04 08:35:16,251 | INFO     | [data] copytool_in thread has finished
[2026-03-04 09:36:11] 2026-03-04 08:35:16,276 | INFO     | [payload] control thread has finished
[2026-03-04 09:36:11] 2026-03-04 08:35:16,389 | INFO     | [job] control thread has finished
[2026-03-04 09:36:11] 2026-03-04 08:35:16,439 | INFO     | [payload] execute_payloads thread has finished
[2026-03-04 09:36:11] 2026-03-04 08:35:16,453 | INFO     | [data] copytool_out thread has finished
[2026-03-04 09:36:11] 2026-03-04 08:35:16,591 | INFO     | [job] queue monitor thread has finished
[2026-03-04 09:36:11] 2026-03-04 08:35:16,691 | INFO     | [payload] failed_post thread has finished
[2026-03-04 09:36:11] 2026-03-04 08:35:19,049 | INFO     | [data] queue_monitor thread has finished
[2026-03-04 09:36:11] 2026-03-04 08:35:44,070 | INFO     | PID=1263889 has CPU usage=13.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-03-04 09:36:11] 2026-03-04 08:35:44,070 | INFO     | .. there are 18 such processes running
[2026-03-04 09:36:11] 2026-03-04 08:35:44,070 | INFO     | found 0 job(s) in 20 queues
[2026-03-04 09:36:11] 2026-03-04 08:35:44,070 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-04 09:36:11] 2026-03-04 08:35:44,070 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-04 09:36:11] 2026-03-04 08:36:04,939 | INFO     | [monitor] cgroup control has ended
[2026-03-04 09:36:11] 2026-03-04 08:36:05,574 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22925626804032)>', '<ExcThread(monitor, started 22925319059200)>']
[2026-03-04 09:36:11] 2026-03-04 08:36:06,171 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-04 09:36:11] 2026-03-04 08:36:06,171 | INFO     | [monitor] control thread has ended
[2026-03-04 09:36:11] 2026-03-04 08:36:10,582 | INFO     | all workflow threads have been joined
[2026-03-04 09:36:11] 2026-03-04 08:36:10,582 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-04 09:36:11] 2026-03-04 08:36:10,582 | INFO     | traces error code: 0
[2026-03-04 09:36:11] 2026-03-04 08:36:10,583 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-04 09:36:11] 2026-03-04 08:36:10,778 [wrapper] ==== pilot stdout END ====
[2026-03-04 09:36:11] 2026-03-04 08:36:10,782 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-04 09:36:11] 2026-03-04 08:36:10,785 [wrapper] pilotpid: 1263889
[2026-03-04 09:36:11] 2026-03-04 08:36:10,789 [wrapper] Pilot exit status: 0
[2026-03-04 09:36:11] 2026-03-04 08:36:10,805 [wrapper] pandaids: 7036175811
[2026-03-04 09:36:11] 2026-03-04 08:36:10,958 [wrapper] cleanup supervisor_pilot 1535233 1263890
[2026-03-04 09:36:11] 2026-03-04 08:36:10,962 [wrapper] Test setup, not cleaning
[2026-03-04 09:36:11] 2026-03-04 08:36:10,966 [wrapper] apfmon messages muted
[2026-03-04 09:36:11] 2026-03-04 08:36:10,971 [wrapper] ==== wrapper stdout END ====
[2026-03-04 09:36:11] 2026-03-04 08:36:10,974 [wrapper] ==== wrapper stderr END ====
[2026-03-04 09:36:11]  *** Error codes and diagnostics ***
[2026-03-04 09:36:11]     "exeErrorCode": 0,
[2026-03-04 09:36:11]     "exeErrorDiag": "",
[2026-03-04 09:36:11]     "pilotErrorCode": 0,
[2026-03-04 09:36:11]     "pilotErrorDiag": "",
[2026-03-04 09:36:11]  *** Listing of results directory ***
[2026-03-04 09:36:11] total 423932
[2026-03-04 09:36:11] -rw-r--r-- 1 boinc boinc    584627 Mar  3 04:05 pilot3.tar.gz
[2026-03-04 09:36:11] -rwx------ 1 boinc boinc     36322 Mar  3 04:08 runpilot2-wrapper.sh
[2026-03-04 09:36:11] -rw-r--r-- 1 boinc boinc      5111 Mar  3 04:10 queuedata.json
[2026-03-04 09:36:11] -rw-r--r-- 1 boinc boinc       100 Mar  4 06:28 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-04 09:36:11] -rwxr-xr-x 1 boinc boinc      7986 Mar  4 06:28 run_atlas
[2026-03-04 09:36:11] -rw-r--r-- 1 boinc boinc       105 Mar  4 06:28 job.xml
[2026-03-04 09:36:11] -rw-r--r-- 2 boinc boinc 234051236 Mar  4 06:28 EVNT.48460411._000003.pool.root.1
[2026-03-04 09:36:11] -rw-r--r-- 1 boinc boinc      6698 Mar  4 06:28 init_data.xml
[2026-03-04 09:36:11] -rw-r--r-- 2 boinc boinc     15845 Mar  4 06:28 start_atlas.sh
[2026-03-04 09:36:11] drwxrwx--x 2 boinc boinc      4096 Mar  4 06:28 shared
[2026-03-04 09:36:11] -rw-r--r-- 2 boinc boinc    597969 Mar  4 06:28 input.tar.gz
[2026-03-04 09:36:11] -rw-r--r-- 1 boinc boinc         0 Mar  4 06:28 boinc_lockfile
[2026-03-04 09:36:11] -rw-r--r-- 1 boinc boinc      2634 Mar  4 06:28 pandaJob.out
[2026-03-04 09:36:11] -rw------- 1 boinc boinc    997749 Mar  4 06:28 agis_schedconf.cvmfs.json
[2026-03-04 09:36:11] -rw------- 1 boinc boinc       443 Mar  4 06:28 workernode_map.json
[2026-03-04 09:36:11] drwx------ 5 boinc boinc      4096 Mar  4 06:28 pilot3
[2026-03-04 09:36:11] -rw------- 1 boinc boinc 192286019 Mar  4 09:34 HITS.48851585._000060.pool.root.1
[2026-03-04 09:36:11] -rw-r--r-- 1 boinc boinc       530 Mar  4 09:34 boinc_task_state.xml
[2026-03-04 09:36:11] -rw------- 1 boinc boinc      1024 Mar  4 09:35 memory_monitor_summary.json
[2026-03-04 09:36:11] -rw------- 1 boinc boinc   1516092 Mar  4 09:35 agis_ddmendpoints.agis.ALL.json
[2026-03-04 09:36:11] -rw------- 1 boinc boinc    354867 Mar  4 09:35 log.48851585._000060.job.log.tgz.1
[2026-03-04 09:36:11] -rw------- 1 boinc boinc        95 Mar  4 09:35 pilot_heartbeat.json
[2026-03-04 09:36:11] -rw------- 1 boinc boinc      6338 Mar  4 09:35 heartbeat.json
[2026-03-04 09:36:11] -rw-r--r-- 1 boinc boinc      8192 Mar  4 09:35 boinc_mmap_file
[2026-03-04 09:36:11] -rw-r--r-- 1 boinc boinc        28 Mar  4 09:35 wrapper_checkpoint.txt
[2026-03-04 09:36:11] -rw------- 1 boinc boinc      6260 Mar  4 09:36 pilotlog.txt
[2026-03-04 09:36:11] -rw------- 1 boinc boinc   1564127 Mar  4 09:36 log.48851585._000060.job.log.1
[2026-03-04 09:36:11] -rw------- 1 boinc boinc       357 Mar  4 09:36 output.list
[2026-03-04 09:36:11] -rw-r--r-- 1 boinc boinc       620 Mar  4 09:36 runtime_log
[2026-03-04 09:36:11] -rw------- 1 boinc boinc   1935360 Mar  4 09:36 result.tar.gz
[2026-03-04 09:36:11] -rw-r--r-- 1 boinc boinc      9205 Mar  4 09:36 runtime_log.err
[2026-03-04 09:36:11] -rw------- 1 boinc boinc       664 Mar  4 09:36 VbPNDm1IVH9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmXVFLDmGE2Uan.diag
[2026-03-04 09:36:11] -rw-r--r-- 1 boinc boinc     21307 Mar  4 09:36 stderr.txt
[2026-03-04 09:36:11] HITS file was successfully produced:
[2026-03-04 09:36:11] -rw------- 1 boinc boinc 192286019 Mar  4 09:34 shared/HITS.pool.root.1
[2026-03-04 09:36:11]  *** Contents of shared directory: ***
[2026-03-04 09:36:11] total 418848
[2026-03-04 09:36:11] -rw-r--r-- 2 boinc boinc 234051236 Mar  4 06:28 ATLAS.root_0
[2026-03-04 09:36:11] -rw-r--r-- 2 boinc boinc     15845 Mar  4 06:28 start_atlas.sh
[2026-03-04 09:36:11] -rw-r--r-- 2 boinc boinc    597969 Mar  4 06:28 input.tar.gz
[2026-03-04 09:36:11] -rw------- 1 boinc boinc 192286019 Mar  4 09:34 HITS.pool.root.1
[2026-03-04 09:36:11] -rw------- 1 boinc boinc   1935360 Mar  4 09:36 result.tar.gz
09:36:12 (1259557): run_atlas exited; CPU time 43582.261849
09:36:12 (1259557): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN