Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
21:36:33 (1695043): wrapper (7.7.26015): starting
21:36:33 (1695043): wrapper: running run_atlas (--nthreads 4)
[2026-03-03 21:36:33] Arguments: --nthreads 4
[2026-03-03 21:36:33] Threads: 4
[2026-03-03 21:36:33] Checking for CVMFS
[2026-03-03 21:36:33] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-03 21:36:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-03 21:36:34] Running cvmfs_config stat atlas.cern.ch
[2026-03-03 21:36:34] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-03 21:36:34] 2.9.2.0 49711 9050 97032 156856 2 49 24757845 36864000 0 130560 0 4545557 99.985 345370 12547 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-03 21:36:34] CVMFS is ok
[2026-03-03 21:36:34] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-03 21:36:34] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-03 21:36:34] Further information can be found at the LHC@home message board.
[2026-03-03 21:36:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-03 21:36:34] Checking for apptainer binary...
[2026-03-03 21:36:34] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-03 21:36:34] Running /usr/bin/apptainer --version
[2026-03-03 21:36:34] apptainer version 1.4.1-1.1
[2026-03-03 21:36:34] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-03 21:36:34] thA317a
[2026-03-03 21:36:34] apptainer works
[2026-03-03 21:36:34] Set ATHENA_PROC_NUMBER=4
[2026-03-03 21:36:34] Set ATHENA_CORE_NUMBER=4
[2026-03-03 21:36:34] Starting ATLAS job with PandaID=7030650092
[2026-03-03 21:36:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-03 22:45:53]  *** The last 200 lines of the pilot log: ***
[2026-03-03 22:45:53] 2026-03-03 21:45:20,139 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-03 22:45:53] 2026-03-03 21:45:20,139 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-03 22:45:53] 2026-03-03 21:45:20,139 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-03 22:45:53] 2026-03-03 21:45:20,139 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-03 22:45:53] 2026-03-03 21:45:20,139 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-03 22:45:53] 2026-03-03 21:45:20,139 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-03 22:45:53] 2026-03-03 21:45:20,139 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-03 22:45:53] 2026-03-03 21:45:20,139 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-03 22:45:53] 2026-03-03 21:45:20,140 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-03 22:45:53] 2026-03-03 21:45:20,140 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-03 22:45:53] 2026-03-03 21:45:20,140 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-03 22:45:53] 2026-03-03 21:45:20,140 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-03 22:45:53] 2026-03-03 21:45:20,140 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-03 22:45:53] 2026-03-03 21:45:20,140 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-03 22:45:53] 2026-03-03 21:45:20,140 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-03 22:45:53] 2026-03-03 21:45:20,140 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-03 22:45:53] 2026-03-03 21:45:20,140 | INFO     | job 7030650092 has completed (purged errors)
[2026-03-03 22:45:53] 2026-03-03 21:45:20,140 | INFO     | overall cleanup function is called
[2026-03-03 22:45:53] 2026-03-03 21:45:21,147 | INFO     | --- collectZombieJob: --- 10, [1703672]
[2026-03-03 22:45:53] 2026-03-03 21:45:21,147 | INFO     | zombie collector waiting for pid 1703672
[2026-03-03 22:45:53] 2026-03-03 21:45:21,147 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-03 22:45:53] 2026-03-03 21:45:21,147 | INFO     | collected zombie processes
[2026-03-03 22:45:53] 2026-03-03 21:45:21,147 | INFO     | will attempt to kill all subprocesses of pid=1703672
[2026-03-03 22:45:53] 2026-03-03 21:45:21,213 | INFO     | process IDs to be killed: [1703672] (in reverse order)
[2026-03-03 22:45:53] 2026-03-03 21:45:21,246 | WARNING  | found no corresponding commands to process id(s)
[2026-03-03 22:45:53] 2026-03-03 21:45:21,246 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-03 22:45:53] 2026-03-03 21:45:21,248 | INFO     | did not find any defunct processes belonging to 1703672
[2026-03-03 22:45:53] 2026-03-03 21:45:21,250 | INFO     | did not find any defunct processes belonging to 1703672
[2026-03-03 22:45:53] 2026-03-03 21:45:21,250 | INFO     | ready for new job
[2026-03-03 22:45:53] 2026-03-03 21:45:21,250 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-03 22:45:53] 2026-03-03 21:45:21,251 | INFO     | **************************************
[2026-03-03 22:45:53] 2026-03-03 21:45:21,251 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-03 22:45:53] 2026-03-03 21:45:21,251 | INFO     | **************************************
[2026-03-03 22:45:53] 2026-03-03 21:45:21,251 | INFO     | 
[2026-03-03 22:45:53] 2026-03-03 21:45:21,251 | INFO     | architecture information:
[2026-03-03 22:45:53] 2026-03-03 21:45:21,251 | INFO     | executing command: cat /etc/os-release
[2026-03-03 22:45:53] 2026-03-03 21:45:21,262 | INFO     | cat /etc/os-release:
[2026-03-03 22:45:53] NAME="CentOS Linux"
[2026-03-03 22:45:53] VERSION="7 (Core)"
[2026-03-03 22:45:53] ID="centos"
[2026-03-03 22:45:53] ID_LIKE="rhel fedora"
[2026-03-03 22:45:53] VERSION_ID="7"
[2026-03-03 22:45:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-03 22:45:53] ANSI_COLOR="0;31"
[2026-03-03 22:45:53] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-03 22:45:53] HOME_URL="https://www.centos.org/"
[2026-03-03 22:45:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-03 22:45:53] 
[2026-03-03 22:45:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-03 22:45:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-03 22:45:53] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-03 22:45:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-03 22:45:53] 
[2026-03-03 22:45:53] 2026-03-03 21:45:21,263 | INFO     | **************************************
[2026-03-03 22:45:53] 2026-03-03 21:45:21,765 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-03 22:45:53] 2026-03-03 21:45:21,779 | INFO     | sufficient remaining disk space (233238953984 B)
[2026-03-03 22:45:53] 2026-03-03 21:45:21,779 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-03 22:45:53] 2026-03-03 21:45:21,779 | INFO     | current server update state: UPDATING_FINAL
[2026-03-03 22:45:53] 2026-03-03 21:45:21,779 | INFO     | update_server=False
[2026-03-03 22:45:53] 2026-03-03 21:45:21,779 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-03 22:45:53] 2026-03-03 21:45:21,779 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-03 22:45:53] 2026-03-03 21:45:21,779 | INFO     | aborting loop
[2026-03-03 22:45:53] 2026-03-03 21:45:21,779 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-03 22:45:53] 2026-03-03 21:45:22,259 | INFO     | all payload control threads have been joined
[2026-03-03 22:45:53] 2026-03-03 21:45:22,553 | INFO     | all data control threads have been joined
[2026-03-03 22:45:53] 2026-03-03 21:45:22,783 | INFO     | [job] queue monitor thread has finished
[2026-03-03 22:45:53] 2026-03-03 21:45:22,785 | INFO     | [job] job monitor thread has finished
[2026-03-03 22:45:53] 2026-03-03 21:45:22,785 | INFO     | [job] retrieve thread has finished
[2026-03-03 22:45:53] 2026-03-03 21:45:22,824 | INFO     | [payload] validate_pre thread has finished
[2026-03-03 22:45:53] 2026-03-03 21:45:22,841 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-03 22:45:53] 2026-03-03 21:45:22,861 | INFO     | [data] copytool_in thread has finished
[2026-03-03 22:45:53] 2026-03-03 21:45:22,863 | INFO     | all job control threads have been joined
[2026-03-03 22:45:53] 2026-03-03 21:45:22,870 | INFO     | [payload] validate_post thread has finished
[2026-03-03 22:45:53] 2026-03-03 21:45:23,201 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-03 22:45:53] 2026-03-03 21:45:23,265 | INFO     | [payload] control thread has finished
[2026-03-03 22:45:53] 2026-03-03 21:45:23,327 | INFO     | [payload] failed_post thread has finished
[2026-03-03 22:45:53] 2026-03-03 21:45:23,559 | INFO     | [data] control thread has finished
[2026-03-03 22:45:53] 2026-03-03 21:45:23,709 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-03 22:45:53] 2026-03-03 21:45:23,842 | INFO     | [payload] execute_payloads thread has finished
[2026-03-03 22:45:53] 2026-03-03 21:45:23,868 | INFO     | [job] control thread has finished
[2026-03-03 22:45:53] 2026-03-03 21:45:24,120 | INFO     | [job] validate thread has finished
[2026-03-03 22:45:53] 2026-03-03 21:45:24,233 | INFO     | [job] create_data_payload thread has finished
[2026-03-03 22:45:53] 2026-03-03 21:45:25,207 | INFO     | [data] copytool_out thread has finished
[2026-03-03 22:45:53] 2026-03-03 21:45:27,716 | INFO     | [data] queue_monitor thread has finished
[2026-03-03 22:45:53] 2026-03-03 21:45:48,580 | INFO     | [monitor] cgroup control has ended
[2026-03-03 22:45:53] 2026-03-03 21:45:48,703 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140218503391040)>', '<ExcThread(monitor, started 140217772132096)>']
[2026-03-03 22:45:53] 2026-03-03 21:45:52,113 | INFO     | PID=1699157 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-03 22:45:53] 2026-03-03 21:45:52,113 | INFO     | found 0 job(s) in 20 queues
[2026-03-03 22:45:53] 2026-03-03 21:45:52,113 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-03 22:45:53] 2026-03-03 21:45:52,113 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-03 22:45:53] 2026-03-03 21:45:52,113 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-03 22:45:53] 2026-03-03 21:45:52,113 | INFO     | [monitor] control thread has ended
[2026-03-03 22:45:53] 2026-03-03 21:45:53,716 | INFO     | all workflow threads have been joined
[2026-03-03 22:45:53] 2026-03-03 21:45:53,716 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-03 22:45:53] 2026-03-03 21:45:53,716 | INFO     | traces error code: 0
[2026-03-03 22:45:53] 2026-03-03 21:45:53,716 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-03 22:45:53] 2026-03-03 21:45:53,765 [wrapper] ==== pilot stdout END ====
[2026-03-03 22:45:53] 2026-03-03 21:45:53,768 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-03 22:45:53] 2026-03-03 21:45:53,771 [wrapper] pilotpid: 1699157
[2026-03-03 22:45:53] 2026-03-03 21:45:53,773 [wrapper] Pilot exit status: 0
[2026-03-03 22:45:53] 2026-03-03 21:45:53,781 [wrapper] pandaids: 7030650092
[2026-03-03 22:45:53] 2026-03-03 21:45:53,803 [wrapper] cleanup supervisor_pilot 1708934 1699158
[2026-03-03 22:45:53] 2026-03-03 21:45:53,806 [wrapper] Test setup, not cleaning
[2026-03-03 22:45:53] 2026-03-03 21:45:53,808 [wrapper] apfmon messages muted
[2026-03-03 22:45:53] 2026-03-03 21:45:53,811 [wrapper] ==== wrapper stdout END ====
[2026-03-03 22:45:53] 2026-03-03 21:45:53,813 [wrapper] ==== wrapper stderr END ====
[2026-03-03 22:45:53]  *** Error codes and diagnostics ***
[2026-03-03 22:45:53]     "exeErrorCode": 0,
[2026-03-03 22:45:53]     "exeErrorDiag": "",
[2026-03-03 22:45:53]     "pilotErrorCode": 0,
[2026-03-03 22:45:53]     "pilotErrorDiag": "",
[2026-03-03 22:45:53]  *** Listing of results directory ***
[2026-03-03 22:45:53] total 464524
[2026-03-03 22:45:53] -rw-r--r-- 1 boinc boinc    584627 Feb 26 10:18 pilot3.tar.gz
[2026-03-03 22:45:53] -rwx------ 1 boinc boinc     36322 Feb 26 10:19 runpilot2-wrapper.sh
[2026-03-03 22:45:53] -rw-r--r-- 1 boinc boinc      5111 Feb 26 10:20 queuedata.json
[2026-03-03 22:45:53] -rw-r--r-- 1 boinc boinc       100 Mar  3 21:36 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-03 22:45:53] -rwxr-xr-x 1 boinc boinc      7986 Mar  3 21:36 run_atlas
[2026-03-03 22:45:53] -rw-r--r-- 1 boinc boinc       105 Mar  3 21:36 job.xml
[2026-03-03 22:45:53] -rw-r--r-- 2 boinc boinc 273047087 Mar  3 21:36 EVNT.48343789._000043.pool.root.1
[2026-03-03 22:45:53] -rw-r--r-- 2 boinc boinc    597958 Mar  3 21:36 input.tar.gz
[2026-03-03 22:45:53] -rw-r--r-- 2 boinc boinc     15845 Mar  3 21:36 start_atlas.sh
[2026-03-03 22:45:53] drwxrwx--x 2 boinc boinc      4096 Mar  3 21:36 shared
[2026-03-03 22:45:53] -rw-r--r-- 1 boinc boinc         0 Mar  3 21:36 boinc_setup_complete
[2026-03-03 22:45:53] -rw-r--r-- 1 boinc boinc      6439 Mar  3 21:36 init_data.xml
[2026-03-03 22:45:53] -rw-r--r-- 1 boinc boinc         0 Mar  3 21:36 boinc_lockfile
[2026-03-03 22:45:53] -rw-r--r-- 1 boinc boinc      2567 Mar  3 21:36 pandaJob.out
[2026-03-03 22:45:53] -rw------- 1 boinc boinc    998476 Mar  3 21:36 agis_schedconf.cvmfs.json
[2026-03-03 22:45:53] -rw------- 1 boinc boinc   1516092 Mar  3 21:36 agis_ddmendpoints.agis.ALL.json
[2026-03-03 22:45:53] -rw------- 1 boinc boinc       424 Mar  3 21:36 workernode_map.json
[2026-03-03 22:45:53] drwx------ 5 boinc boinc      4096 Mar  3 21:36 pilot3
[2026-03-03 22:45:53] -rw------- 1 boinc boinc 196978597 Mar  3 22:44 HITS.48838615._001056.pool.root.1
[2026-03-03 22:45:53] -rw------- 1 boinc boinc        95 Mar  3 22:45 pilot_heartbeat.json
[2026-03-03 22:45:53] -rw-r--r-- 1 boinc boinc       529 Mar  3 22:45 boinc_task_state.xml
[2026-03-03 22:45:53] -rw------- 1 boinc boinc      1014 Mar  3 22:45 memory_monitor_summary.json
[2026-03-03 22:45:53] -rw------- 1 boinc boinc    247709 Mar  3 22:45 log.48838615._001056.job.log.tgz.1
[2026-03-03 22:45:53] -rw------- 1 boinc boinc      6299 Mar  3 22:45 heartbeat.json
[2026-03-03 22:45:53] -rw-r--r-- 1 boinc boinc      8192 Mar  3 22:45 boinc_mmap_file
[2026-03-03 22:45:53] -rw-r--r-- 1 boinc boinc        27 Mar  3 22:45 wrapper_checkpoint.txt
[2026-03-03 22:45:53] -rw------- 1 boinc boinc      4748 Mar  3 22:45 pilotlog.txt
[2026-03-03 22:45:53] -rw------- 1 boinc boinc    613032 Mar  3 22:45 log.48838615._001056.job.log.1
[2026-03-03 22:45:53] -rw------- 1 boinc boinc       357 Mar  3 22:45 output.list
[2026-03-03 22:45:53] -rw-r--r-- 1 boinc boinc       620 Mar  3 22:45 runtime_log
[2026-03-03 22:45:53] -rw------- 1 boinc boinc    880640 Mar  3 22:45 result.tar.gz
[2026-03-03 22:45:53] -rw-r--r-- 1 boinc boinc      8901 Mar  3 22:45 runtime_log.err
[2026-03-03 22:45:53] -rw------- 1 boinc boinc       658 Mar  3 22:45 dX9NDmyhmF9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmwb2KDm7l2Cxn.diag
[2026-03-03 22:45:53] -rw-r--r-- 1 boinc boinc     12448 Mar  3 22:45 stderr.txt
[2026-03-03 22:45:53] HITS file was successfully produced:
[2026-03-03 22:45:53] -rw------- 1 boinc boinc 196978597 Mar  3 22:44 shared/HITS.pool.root.1
[2026-03-03 22:45:53]  *** Contents of shared directory: ***
[2026-03-03 22:45:53] total 460480
[2026-03-03 22:45:53] -rw-r--r-- 2 boinc boinc 273047087 Mar  3 21:36 ATLAS.root_0
[2026-03-03 22:45:53] -rw-r--r-- 2 boinc boinc    597958 Mar  3 21:36 input.tar.gz
[2026-03-03 22:45:53] -rw-r--r-- 2 boinc boinc     15845 Mar  3 21:36 start_atlas.sh
[2026-03-03 22:45:53] -rw------- 1 boinc boinc 196978597 Mar  3 22:44 HITS.pool.root.1
[2026-03-03 22:45:53] -rw------- 1 boinc boinc    880640 Mar  3 22:45 result.tar.gz
22:45:54 (1695043): run_atlas exited; CPU time 15503.713250
22:45:54 (1695043): called boinc_finish(0)

</stderr_txt>
]]>

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