Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
13:00:21 (1479186): wrapper (7.7.26015): starting
13:00:21 (1479186): wrapper: running run_atlas (--nthreads 4)
[2026-03-03 13:00:21] Arguments: --nthreads 4
[2026-03-03 13:00:21] Threads: 4
[2026-03-03 13:00:21] Checking for CVMFS
[2026-03-03 13:00:21] No cvmfs_config command found, will try listing directly
[2026-03-03 13:00:21] CVMFS is ok
[2026-03-03 13:00:21] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-03 13:00:21] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-03 13:00:21] Further information can be found at the LHC@home message board.
[2026-03-03 13:00:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-03 13:00:21] Checking for apptainer binary...
[2026-03-03 13:00:21] which: no apptainer in ((null))
[2026-03-03 13:00:21] apptainer is not installed, using version from CVMFS
[2026-03-03 13:00:21] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-03 13:00:21] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot24/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut04.grid.cesnet.cz
[2026-03-03 13:00:21] apptainer works
[2026-03-03 13:00:21] Set ATHENA_PROC_NUMBER=4
[2026-03-03 13:00:21] Set ATHENA_CORE_NUMBER=4
[2026-03-03 13:00:21] Starting ATLAS job with PandaID=7036125414
[2026-03-03 13:00:21] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot24/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-03 20:48:33]  *** The last 200 lines of the pilot log: ***
[2026-03-03 20:48:33] 2026-03-03 19:47:25,731 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-03 20:48:33] 2026-03-03 19:47:25,731 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-03 20:48:33] 2026-03-03 19:47:25,731 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-03 20:48:33] 2026-03-03 19:47:25,740 | INFO     | fitting pss+swap vs Time
[2026-03-03 20:48:33] 2026-03-03 19:47:25,741 | INFO     | sum of square deviations: 29985703388.997635
[2026-03-03 20:48:33] 2026-03-03 19:47:25,746 | INFO     | sum of deviations: 91333877198.28973
[2026-03-03 20:48:33] 2026-03-03 19:47:25,746 | INFO     | mean x: 1772553232.0021787
[2026-03-03 20:48:33] 2026-03-03 19:47:25,746 | INFO     | mean y: 2303428.7102396516
[2026-03-03 20:48:33] 2026-03-03 19:47:25,746 | INFO     | intersect: -5396741480.088559
[2026-03-03 20:48:33] 2026-03-03 19:47:25,747 | INFO     | chi2: 1.2954855164970176
[2026-03-03 20:48:33] 2026-03-03 19:47:25,748 | INFO     | sum of square deviations: 29016411101.497765
[2026-03-03 20:48:33] 2026-03-03 19:47:25,753 | INFO     | sum of deviations: 90036981839.33919
[2026-03-03 20:48:33] 2026-03-03 19:47:25,753 | INFO     | mean x: 1772553079.5022027
[2026-03-03 20:48:33] 2026-03-03 19:47:25,753 | INFO     | mean y: 2303224.6607929515
[2026-03-03 20:48:33] 2026-03-03 19:47:25,753 | INFO     | intersect: -5497871447.877073
[2026-03-03 20:48:33] 2026-03-03 19:47:25,754 | INFO     | chi2: 1.2955103967901425
[2026-03-03 20:48:33] 2026-03-03 19:47:25,754 | INFO     | current chi2=1.2955103967901425 (change=-0.0019205381154811156 %)
[2026-03-03 20:48:33] 2026-03-03 19:47:25,754 | INFO     | right removable region: 453
[2026-03-03 20:48:33] 2026-03-03 19:47:25,755 | INFO     | sum of square deviations: 29016410491.497765
[2026-03-03 20:48:33] 2026-03-03 19:47:25,760 | INFO     | sum of deviations: 33769388102.092514
[2026-03-03 20:48:33] 2026-03-03 19:47:25,760 | INFO     | mean x: 1772553384.5022027
[2026-03-03 20:48:33] 2026-03-03 19:47:25,760 | INFO     | mean y: 2312433.407488987
[2026-03-03 20:48:33] 2026-03-03 19:47:25,760 | INFO     | intersect: -2060590667.252456
[2026-03-03 20:48:33] 2026-03-03 19:47:25,761 | INFO     | chi2: 0.007427789000100093
[2026-03-03 20:48:33] 2026-03-03 19:47:25,761 | INFO     | current chi2=0.007427789000100093 (change=99.42664052160269 %)
[2026-03-03 20:48:33] 2026-03-03 19:47:25,762 | INFO     | sum of square deviations: 28068234268.99779
[2026-03-03 20:48:33] 2026-03-03 19:47:25,767 | INFO     | sum of deviations: 29767568867.928764
[2026-03-03 20:48:33] 2026-03-03 19:47:25,767 | INFO     | mean x: 1772553537.002227
[2026-03-03 20:48:33] 2026-03-03 19:47:25,767 | INFO     | mean y: 2313074.071269488
[2026-03-03 20:48:33] 2026-03-03 19:47:25,768 | INFO     | intersect: -1877556139.6143456
[2026-03-03 20:48:33] 2026-03-03 19:47:25,768 | INFO     | chi2: 0.0013792239792192744
[2026-03-03 20:48:33] 2026-03-03 19:47:25,768 | INFO     | current chi2=0.0013792239792192744 (change=81.43156760106287 %)
[2026-03-03 20:48:33] 2026-03-03 19:47:25,769 | INFO     | sum of square deviations: 27140942158.997818
[2026-03-03 20:48:33] 2026-03-03 19:47:25,774 | INFO     | sum of deviations: 29669579854.05853
[2026-03-03 20:48:33] 2026-03-03 19:47:25,774 | INFO     | mean x: 1772553689.5022523
[2026-03-03 20:48:33] 2026-03-03 19:47:25,774 | INFO     | mean y: 2313090.9414414414
[2026-03-03 20:48:33] 2026-03-03 19:47:25,774 | INFO     | intersect: -1935383947.289713
[2026-03-03 20:48:33] 2026-03-03 19:47:25,775 | INFO     | chi2: 0.0010026879133726943
[2026-03-03 20:48:33] 2026-03-03 19:47:25,775 | INFO     | current chi2=0.0010026879133726943 (change=27.300574201133216 %)
[2026-03-03 20:48:33] 2026-03-03 19:47:25,776 | INFO     | sum of square deviations: 26234301598.99773
[2026-03-03 20:48:33] 2026-03-03 19:47:25,781 | INFO     | sum of deviations: 28165234200.9613
[2026-03-03 20:48:33] 2026-03-03 19:47:25,781 | INFO     | mean x: 1772553842.0022779
[2026-03-03 20:48:33] 2026-03-03 19:47:25,781 | INFO     | mean y: 2313344.0387243736
[2026-03-03 20:48:33] 2026-03-03 19:47:25,781 | INFO     | intersect: -1900706406.855473
[2026-03-03 20:48:33] 2026-03-03 19:47:25,781 | INFO     | chi2: 0.0009443869225309982
[2026-03-03 20:48:33] 2026-03-03 19:47:25,782 | INFO     | current chi2=0.0009443869225309982 (change=5.814470291717368 %)
[2026-03-03 20:48:33] 2026-03-03 19:47:25,782 | INFO     | left removable region: 40
[2026-03-03 20:48:33] 2026-03-03 19:47:25,782 | INFO     | sum of square deviations: 21843677026.99756
[2026-03-03 20:48:33] 2026-03-03 19:47:25,787 | INFO     | sum of deviations: 21994299528.77239
[2026-03-03 20:48:33] 2026-03-03 19:47:25,787 | INFO     | mean x: 1772554269.0024214
[2026-03-03 20:48:33] 2026-03-03 19:47:25,787 | INFO     | mean y: 2314227.2276029056
[2026-03-03 20:48:33] 2026-03-03 19:47:25,787 | INFO     | intersect: -1782462643.2259762
[2026-03-03 20:48:33] 2026-03-03 19:47:25,788 | INFO     | chi2: 0.0006712824572809538
[2026-03-03 20:48:33] 2026-03-03 19:47:25,788 | INFO     | current memory leak: 1.01 B/s (using 413 data points, chi2=0.00)
[2026-03-03 20:48:33] 2026-03-03 19:47:25,788 | INFO     | could have reported an average CPU frequency of 2584 MHz (19 samples)
[2026-03-03 20:48:33] 2026-03-03 19:47:25,789 | INFO     | ..............................
[2026-03-03 20:48:33] 2026-03-03 19:47:25,789 | INFO     | . Timing measurements:
[2026-03-03 20:48:33] 2026-03-03 19:47:25,789 | INFO     | . get job = 0 s
[2026-03-03 20:48:33] 2026-03-03 19:47:25,789 | INFO     | . initial setup = 6 s
[2026-03-03 20:48:33] 2026-03-03 19:47:25,789 | INFO     | . payload setup = 6 s
[2026-03-03 20:48:33] 2026-03-03 19:47:25,789 | INFO     | . stage-in = 0 s
[2026-03-03 20:48:33] 2026-03-03 19:47:25,789 | INFO     | . payload execution = 27981 s
[2026-03-03 20:48:33] 2026-03-03 19:47:25,789 | INFO     | . stage-out = 1 s
[2026-03-03 20:48:33] 2026-03-03 19:47:25,789 | INFO     | . log creation = 0 s
[2026-03-03 20:48:33] 2026-03-03 19:47:25,789 | INFO     | ..............................
[2026-03-03 20:48:33] 2026-03-03 19:47:25,886 | INFO     | 
[2026-03-03 20:48:33] 2026-03-03 19:47:25,886 | INFO     | job summary report
[2026-03-03 20:48:33] 2026-03-03 19:47:25,886 | INFO     | --------------------------------------------------
[2026-03-03 20:48:33] 2026-03-03 19:47:25,886 | INFO     | PanDA job id: 7036125414
[2026-03-03 20:48:33] 2026-03-03 19:47:25,887 | INFO     | task id: 48849394
[2026-03-03 20:48:33] 2026-03-03 19:47:25,887 | INFO     | errors: (none)
[2026-03-03 20:48:33] 2026-03-03 19:47:25,887 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-03 20:48:33] 2026-03-03 19:47:25,887 | INFO     | pilot state: finished 
[2026-03-03 20:48:33] 2026-03-03 19:47:25,887 | INFO     | transexitcode: 0
[2026-03-03 20:48:33] 2026-03-03 19:47:25,887 | INFO     | exeerrorcode: 0
[2026-03-03 20:48:33] 2026-03-03 19:47:25,887 | INFO     | exeerrordiag: 
[2026-03-03 20:48:33] 2026-03-03 19:47:25,887 | INFO     | exitcode: 0
[2026-03-03 20:48:33] 2026-03-03 19:47:25,887 | INFO     | exitmsg: OK
[2026-03-03 20:48:33] 2026-03-03 19:47:25,887 | INFO     | cpuconsumptiontime: 106374 s
[2026-03-03 20:48:33] 2026-03-03 19:47:25,887 | INFO     | nevents: 400
[2026-03-03 20:48:33] 2026-03-03 19:47:25,888 | INFO     | neventsw: 0
[2026-03-03 20:48:33] 2026-03-03 19:47:25,888 | INFO     | pid: 1512063
[2026-03-03 20:48:33] 2026-03-03 19:47:25,888 | INFO     | pgrp: 1512063
[2026-03-03 20:48:33] 2026-03-03 19:47:25,888 | INFO     | corecount: 4
[2026-03-03 20:48:33] 2026-03-03 19:47:25,888 | INFO     | event service: False
[2026-03-03 20:48:33] 2026-03-03 19:47:25,888 | INFO     | sizes: {0: 2286050, 1: 2287179, 12: 2287179, 27991: 2324773, 27992: 2333793, 27994: 2333849, 27995: 2334171}
[2026-03-03 20:48:33] 2026-03-03 19:47:25,888 | INFO     | --------------------------------------------------
[2026-03-03 20:48:33] 2026-03-03 19:47:25,888 | INFO     | 
[2026-03-03 20:48:33] 2026-03-03 19:47:25,888 | INFO     | executing command: ls -lF /scratch/boinc/var/slot24/slots/0
[2026-03-03 20:48:33] 2026-03-03 19:47:25,911 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-03 20:48:33] 2026-03-03 19:47:25,911 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-03 20:48:33] 2026-03-03 19:47:25,912 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-03 20:48:33] 2026-03-03 19:47:25,912 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-03 20:48:33] 2026-03-03 19:47:25,912 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-03 20:48:33] 2026-03-03 19:47:25,912 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-03 20:48:33] 2026-03-03 19:47:25,912 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-03 20:48:33] 2026-03-03 19:47:25,912 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-03 20:48:33] 2026-03-03 19:47:25,912 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-03 20:48:33] 2026-03-03 19:47:25,912 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-03 20:48:33] 2026-03-03 19:47:25,912 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-03 20:48:33] 2026-03-03 19:47:25,912 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-03 20:48:33] 2026-03-03 19:47:25,912 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-03 20:48:33] 2026-03-03 19:47:25,913 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-03 20:48:33] 2026-03-03 19:47:25,913 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-03 20:48:33] 2026-03-03 19:47:25,913 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-03 20:48:33] 2026-03-03 19:47:25,913 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-03 20:48:33] 2026-03-03 19:47:25,913 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-03 20:48:33] 2026-03-03 19:47:25,913 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-03 20:48:33] 2026-03-03 19:47:25,913 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-03 20:48:33] 2026-03-03 19:47:25,913 | INFO     | job 7036125414 has completed (purged errors)
[2026-03-03 20:48:33] 2026-03-03 19:47:25,913 | INFO     | overall cleanup function is called
[2026-03-03 20:48:33] 2026-03-03 19:47:26,921 | INFO     | --- collectZombieJob: --- 10, [1512063]
[2026-03-03 20:48:33] 2026-03-03 19:47:26,922 | INFO     | zombie collector waiting for pid 1512063
[2026-03-03 20:48:33] 2026-03-03 19:47:26,922 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-03 20:48:33] 2026-03-03 19:47:26,922 | INFO     | collected zombie processes
[2026-03-03 20:48:33] 2026-03-03 19:47:26,922 | INFO     | will attempt to kill all subprocesses of pid=1512063
[2026-03-03 20:48:33] 2026-03-03 19:47:27,291 | INFO     | process IDs to be killed: [1512063] (in reverse order)
[2026-03-03 20:48:33] 2026-03-03 19:47:27,427 | WARNING  | found no corresponding commands to process id(s)
[2026-03-03 20:48:33] 2026-03-03 19:47:27,428 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-03 20:48:33] 2026-03-03 19:47:27,439 | INFO     | did not find any defunct processes belonging to 1512063
[2026-03-03 20:48:33] 2026-03-03 19:47:27,450 | INFO     | did not find any defunct processes belonging to 1512063
[2026-03-03 20:48:33] 2026-03-03 19:47:27,450 | INFO     | ready for new job
[2026-03-03 20:48:33] 2026-03-03 19:47:27,451 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-03 20:48:33] 2026-03-03 19:47:27,454 | INFO     | **************************************
[2026-03-03 20:48:33] 2026-03-03 19:47:27,454 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-03 20:48:33] 2026-03-03 19:47:27,455 | INFO     | **************************************
[2026-03-03 20:48:33] 2026-03-03 19:47:27,455 | INFO     | 
[2026-03-03 20:48:33] 2026-03-03 19:47:27,459 | INFO     | architecture information:
[2026-03-03 20:48:33] 2026-03-03 19:47:27,459 | INFO     | executing command: cat /etc/os-release
[2026-03-03 20:48:33] 2026-03-03 19:47:27,477 | INFO     | cat /etc/os-release:
[2026-03-03 20:48:33] NAME="CentOS Linux"
[2026-03-03 20:48:33] VERSION="7 (Core)"
[2026-03-03 20:48:33] ID="centos"
[2026-03-03 20:48:33] ID_LIKE="rhel fedora"
[2026-03-03 20:48:33] VERSION_ID="7"
[2026-03-03 20:48:33] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-03 20:48:33] ANSI_COLOR="0;31"
[2026-03-03 20:48:33] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-03 20:48:33] HOME_URL="https://www.centos.org/"
[2026-03-03 20:48:33] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-03 20:48:33] 
[2026-03-03 20:48:33] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-03 20:48:33] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-03 20:48:33] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-03 20:48:33] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-03 20:48:33] 
[2026-03-03 20:48:33] 2026-03-03 19:47:27,478 | INFO     | **************************************
[2026-03-03 20:48:33] 2026-03-03 19:47:27,981 | INFO     | executing command: df -mP /scratch/boinc/var/slot24/slots/0
[2026-03-03 20:48:33] 2026-03-03 19:47:27,997 | INFO     | sufficient remaining disk space (671583567872 B)
[2026-03-03 20:48:33] 2026-03-03 19:47:27,997 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-03 20:48:33] 2026-03-03 19:47:27,998 | INFO     | current server update state: UPDATING_FINAL
[2026-03-03 20:48:33] 2026-03-03 19:47:27,998 | INFO     | update_server=False
[2026-03-03 20:48:33] 2026-03-03 19:47:27,998 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-03 20:48:33] 2026-03-03 19:47:28,280 | INFO     | all payload control threads have been joined
[2026-03-03 20:48:33] 2026-03-03 19:47:28,573 | INFO     | all data control threads have been joined
[2026-03-03 20:48:33] 2026-03-03 19:47:28,770 | INFO     | all job control threads have been joined
[2026-03-03 20:48:33] 2026-03-03 19:47:28,881 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-03 20:48:33] 2026-03-03 19:47:28,955 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-03 20:48:33] 2026-03-03 19:47:28,956 | INFO     | aborting loop
[2026-03-03 20:48:33] 2026-03-03 19:47:29,002 | INFO     | [job] retrieve thread has finished
[2026-03-03 20:48:33] 2026-03-03 19:47:29,093 | INFO     | [payload] execute_payloads thread has finished
[2026-03-03 20:48:33] 2026-03-03 19:47:29,285 | INFO     | [payload] control thread has finished
[2026-03-03 20:48:33] 2026-03-03 19:47:29,521 | INFO     | [payload] validate_pre thread has finished
[2026-03-03 20:48:33] 2026-03-03 19:47:29,578 | INFO     | [data] control thread has finished
[2026-03-03 20:48:33] 2026-03-03 19:47:29,605 | INFO     | [payload] validate_post thread has finished
[2026-03-03 20:48:33] 2026-03-03 19:47:29,706 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-03 20:48:33] 2026-03-03 19:47:29,775 | INFO     | [job] control thread has finished
[2026-03-03 20:48:33] 2026-03-03 19:47:29,897 | INFO     | [job] validate thread has finished
[2026-03-03 20:48:33] 2026-03-03 19:47:29,960 | INFO     | [job] job monitor thread has finished
[2026-03-03 20:48:33] 2026-03-03 19:47:30,104 | INFO     | [payload] failed_post thread has finished
[2026-03-03 20:48:33] 2026-03-03 19:47:30,143 | INFO     | [data] copytool_in thread has finished
[2026-03-03 20:48:33] 2026-03-03 19:47:30,189 | INFO     | [job] create_data_payload thread has finished
[2026-03-03 20:48:33] 2026-03-03 19:47:30,886 | INFO     | [data] copytool_out thread has finished
[2026-03-03 20:48:33] 2026-03-03 19:47:30,894 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-03 20:48:33] 2026-03-03 19:47:31,045 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-03 20:48:33] 2026-03-03 19:47:31,898 | INFO     | [job] queue monitor thread has finished
[2026-03-03 20:48:33] 2026-03-03 19:47:35,051 | INFO     | [data] queue_monitor thread has finished
[2026-03-03 20:48:33] 2026-03-03 19:47:58,664 | INFO     | PID=1491952 has CPU usage=7.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-03 20:48:33] 2026-03-03 19:47:58,665 | INFO     | .. there are 13 such processes running
[2026-03-03 20:48:33] 2026-03-03 19:47:58,665 | INFO     | found 0 job(s) in 20 queues
[2026-03-03 20:48:33] 2026-03-03 19:47:58,665 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-03 20:48:33] 2026-03-03 19:47:58,665 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-03 20:48:33] 2026-03-03 19:48:26,223 | INFO     | [monitor] cgroup control has ended
[2026-03-03 20:48:33] 2026-03-03 19:48:28,292 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22482830018368)>', '<ExcThread(monitor, started 22482586437376)>']
[2026-03-03 20:48:33] 2026-03-03 19:48:28,810 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-03 20:48:33] 2026-03-03 19:48:28,811 | INFO     | [monitor] control thread has ended
[2026-03-03 20:48:33] 2026-03-03 19:48:33,317 | INFO     | all workflow threads have been joined
[2026-03-03 20:48:33] 2026-03-03 19:48:33,318 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-03 20:48:33] 2026-03-03 19:48:33,318 | INFO     | traces error code: 0
[2026-03-03 20:48:33] 2026-03-03 19:48:33,318 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-03 20:48:33] 2026-03-03 19:48:33,462 [wrapper] ==== pilot stdout END ====
[2026-03-03 20:48:33] 2026-03-03 19:48:33,465 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-03 20:48:33] 2026-03-03 19:48:33,468 [wrapper] pilotpid: 1491952
[2026-03-03 20:48:33] 2026-03-03 19:48:33,472 [wrapper] Pilot exit status: 0
[2026-03-03 20:48:33] 2026-03-03 19:48:33,484 [wrapper] pandaids: 7036125414
[2026-03-03 20:48:33] 2026-03-03 19:48:33,559 [wrapper] cleanup supervisor_pilot 1887615 1491953
[2026-03-03 20:48:33] 2026-03-03 19:48:33,563 [wrapper] Test setup, not cleaning
[2026-03-03 20:48:33] 2026-03-03 19:48:33,566 [wrapper] apfmon messages muted
[2026-03-03 20:48:33] 2026-03-03 19:48:33,568 [wrapper] ==== wrapper stdout END ====
[2026-03-03 20:48:33] 2026-03-03 19:48:33,571 [wrapper] ==== wrapper stderr END ====
[2026-03-03 20:48:33]  *** Error codes and diagnostics ***
[2026-03-03 20:48:33]     "exeErrorCode": 0,
[2026-03-03 20:48:33]     "exeErrorDiag": "",
[2026-03-03 20:48:33]     "pilotErrorCode": 0,
[2026-03-03 20:48:33]     "pilotErrorDiag": "",
[2026-03-03 20:48:33]  *** Listing of results directory ***
[2026-03-03 20:48:33] total 345572
[2026-03-03 20:48:33] -rw-r--r-- 1 boinc boinc    584627 Mar  2 23:33 pilot3.tar.gz
[2026-03-03 20:48:33] -rw-r--r-- 1 boinc boinc      5111 Mar  2 23:33 queuedata.json
[2026-03-03 20:48:33] -rwx------ 1 boinc boinc     36322 Mar  2 23:33 runpilot2-wrapper.sh
[2026-03-03 20:48:33] -rw-r--r-- 1 boinc boinc       100 Mar  3 13:00 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-03 20:48:33] -rwxr-xr-x 1 boinc boinc      7986 Mar  3 13:00 run_atlas
[2026-03-03 20:48:33] -rw-r--r-- 1 boinc boinc       105 Mar  3 13:00 job.xml
[2026-03-03 20:48:33] -rw-r--r-- 2 boinc boinc 191170041 Mar  3 13:00 EVNT.48457043._000002.pool.root.1
[2026-03-03 20:48:33] -rw-r--r-- 1 boinc boinc      6639 Mar  3 13:00 init_data.xml
[2026-03-03 20:48:33] -rw-r--r-- 2 boinc boinc     15845 Mar  3 13:00 start_atlas.sh
[2026-03-03 20:48:33] drwxrwx--x 2 boinc boinc      4096 Mar  3 13:00 shared
[2026-03-03 20:48:33] -rw-r--r-- 2 boinc boinc    597960 Mar  3 13:00 input.tar.gz
[2026-03-03 20:48:33] -rw-r--r-- 1 boinc boinc         0 Mar  3 13:00 boinc_lockfile
[2026-03-03 20:48:33] -rw-r--r-- 1 boinc boinc      2616 Mar  3 13:00 pandaJob.out
[2026-03-03 20:48:33] -rw------- 1 boinc boinc    998442 Mar  3 13:00 agis_schedconf.cvmfs.json
[2026-03-03 20:48:33] -rw------- 1 boinc boinc       452 Mar  3 13:00 workernode_map.json
[2026-03-03 20:48:33] drwx------ 5 boinc boinc      4096 Mar  3 13:00 pilot3
[2026-03-03 20:48:33] -rw------- 1 boinc boinc 149819965 Mar  3 20:46 HITS.48849394._000027.pool.root.1
[2026-03-03 20:48:33] -rw-r--r-- 1 boinc boinc       531 Mar  3 20:46 boinc_task_state.xml
[2026-03-03 20:48:33] -rw------- 1 boinc boinc        95 Mar  3 20:46 pilot_heartbeat.json
[2026-03-03 20:48:33] -rw------- 1 boinc boinc      1034 Mar  3 20:47 memory_monitor_summary.json
[2026-03-03 20:48:33] -rw------- 1 boinc boinc   1516092 Mar  3 20:47 agis_ddmendpoints.agis.ALL.json
[2026-03-03 20:48:33] -rw------- 1 boinc boinc    578011 Mar  3 20:47 log.48849394._000027.job.log.tgz.1
[2026-03-03 20:48:33] -rw------- 1 boinc boinc      6395 Mar  3 20:47 heartbeat.json
[2026-03-03 20:48:33] -rw-r--r-- 1 boinc boinc      8192 Mar  3 20:48 boinc_mmap_file
[2026-03-03 20:48:33] -rw-r--r-- 1 boinc boinc        29 Mar  3 20:48 wrapper_checkpoint.txt
[2026-03-03 20:48:33] -rw------- 1 boinc boinc      4830 Mar  3 20:48 pilotlog.txt
[2026-03-03 20:48:33] -rw------- 1 boinc boinc   3892908 Mar  3 20:48 log.48849394._000027.job.log.1
[2026-03-03 20:48:33] -rw------- 1 boinc boinc       357 Mar  3 20:48 output.list
[2026-03-03 20:48:33] -rw-r--r-- 1 boinc boinc       620 Mar  3 20:48 runtime_log
[2026-03-03 20:48:33] -rw------- 1 boinc boinc   4485120 Mar  3 20:48 result.tar.gz
[2026-03-03 20:48:33] -rw-r--r-- 1 boinc boinc      9205 Mar  3 20:48 runtime_log.err
[2026-03-03 20:48:33] -rw------- 1 boinc boinc       666 Mar  3 20:48 Dc2NDmf0QH9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmPsELDmaO3iNo.diag
[2026-03-03 20:48:33] -rw-r--r-- 1 boinc boinc     20792 Mar  3 20:48 stderr.txt
[2026-03-03 20:48:33] HITS file was successfully produced:
[2026-03-03 20:48:33] -rw------- 1 boinc boinc 149819965 Mar  3 20:46 shared/HITS.pool.root.1
[2026-03-03 20:48:33]  *** Contents of shared directory: ***
[2026-03-03 20:48:33] total 337992
[2026-03-03 20:48:33] -rw-r--r-- 2 boinc boinc 191170041 Mar  3 13:00 ATLAS.root_0
[2026-03-03 20:48:33] -rw-r--r-- 2 boinc boinc     15845 Mar  3 13:00 start_atlas.sh
[2026-03-03 20:48:33] -rw-r--r-- 2 boinc boinc    597960 Mar  3 13:00 input.tar.gz
[2026-03-03 20:48:33] -rw------- 1 boinc boinc 149819965 Mar  3 20:46 HITS.pool.root.1
[2026-03-03 20:48:33] -rw------- 1 boinc boinc   4485120 Mar  3 20:48 result.tar.gz
20:48:34 (1479186): run_atlas exited; CPU time 107689.426485
20:48:34 (1479186): called boinc_finish(0)

</stderr_txt>
]]>

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