Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
03:11:32 (968598): wrapper (7.7.26015): starting
03:11:32 (968598): wrapper: running run_atlas (--nthreads 4)
[2026-03-04 03:11:32] Arguments: --nthreads 4
[2026-03-04 03:11:32] Threads: 4
[2026-03-04 03:11:32] Checking for CVMFS
[2026-03-04 03:11:32] No cvmfs_config command found, will try listing directly
[2026-03-04 03:11:32] CVMFS is ok
[2026-03-04 03:11:32] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-04 03:11:32] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-04 03:11:32] Further information can be found at the LHC@home message board.
[2026-03-04 03:11:32] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-04 03:11:32] Checking for apptainer binary...
[2026-03-04 03:11:32] which: no apptainer in ((null))
[2026-03-04 03:11:32] apptainer is not installed, using version from CVMFS
[2026-03-04 03:11:32] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-04 03:11:32] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot92/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut12.grid.cesnet.cz
[2026-03-04 03:11:32] apptainer works
[2026-03-04 03:11:32] Set ATHENA_PROC_NUMBER=4
[2026-03-04 03:11:32] Set ATHENA_CORE_NUMBER=4
[2026-03-04 03:11:32] Starting ATLAS job with PandaID=7036125017
[2026-03-04 03:11:32] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot92/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-04 06:28:16]  *** The last 200 lines of the pilot log: ***
[2026-03-04 06:28:16] 2026-03-04 05:27:39,355 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_2543758/.job.ad'
[2026-03-04 06:28:16] 2026-03-04 05:27:39,355 | INFO     | total number of processed events: 400 (read)
[2026-03-04 06:28:16] 2026-03-04 05:27:39,379 | INFO     | using path: /scratch/boinc/var/slot92/slots/0/PanDA_Pilot-7036125017/memory_monitor_summary.json (trf name=prmon)
[2026-03-04 06:28:16] 2026-03-04 05:27:39,379 | INFO     | extracted standard info from prmon json
[2026-03-04 06:28:16] 2026-03-04 05:27:39,379 | INFO     | extracted standard memory fields from prmon json
[2026-03-04 06:28:16] 2026-03-04 05:27:39,380 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-04 06:28:16] 2026-03-04 05:27:39,380 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-04 06:28:16] 2026-03-04 05:27:39,380 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-04 06:28:16] 2026-03-04 05:27:39,383 | INFO     | fitting pss+swap vs Time
[2026-03-04 06:28:16] 2026-03-04 05:27:39,384 | INFO     | sum of square deviations: 2229146912.0
[2026-03-04 06:28:16] 2026-03-04 05:27:39,385 | INFO     | sum of deviations: 16945032498.000002
[2026-03-04 06:28:16] 2026-03-04 05:27:39,385 | INFO     | mean x: 1772596194.0
[2026-03-04 06:28:16] 2026-03-04 05:27:39,385 | INFO     | mean y: 2320675.5284974095
[2026-03-04 06:28:16] 2026-03-04 05:27:39,385 | INFO     | intersect: -13472206261.869299
[2026-03-04 06:28:16] 2026-03-04 05:27:39,386 | INFO     | chi2: 1.8909292899197996
[2026-03-04 06:28:16] 2026-03-04 05:27:39,386 | INFO     | sum of square deviations: 2060343747.0
[2026-03-04 06:28:16] 2026-03-04 05:27:39,387 | INFO     | sum of deviations: 28209671216.5
[2026-03-04 06:28:16] 2026-03-04 05:27:39,387 | INFO     | mean x: 1772596041.5
[2026-03-04 06:28:16] 2026-03-04 05:27:39,387 | INFO     | mean y: 2330625.75
[2026-03-04 06:28:16] 2026-03-04 05:27:39,387 | INFO     | intersect: -24267576569.684795
[2026-03-04 06:28:16] 2026-03-04 05:27:39,388 | INFO     | chi2: 1.121436827206687
[2026-03-04 06:28:16] 2026-03-04 05:27:39,388 | INFO     | current chi2=1.121436827206687 (change=40.69387823305382 %)
[2026-03-04 06:28:16] 2026-03-04 05:27:39,388 | INFO     | sum of square deviations: 1900284932.0
[2026-03-04 06:28:16] 2026-03-04 05:27:39,389 | INFO     | sum of deviations: 27325126961.0
[2026-03-04 06:28:16] 2026-03-04 05:27:39,389 | INFO     | mean x: 1772595889.0
[2026-03-04 06:28:16] 2026-03-04 05:27:39,389 | INFO     | mean y: 2329782.781420765
[2026-03-04 06:28:16] 2026-03-04 05:27:39,389 | INFO     | intersect: -25486693942.988804
[2026-03-04 06:28:16] 2026-03-04 05:27:39,390 | INFO     | chi2: 1.121634931954702
[2026-03-04 06:28:16] 2026-03-04 05:27:39,390 | INFO     | current chi2=1.121634931954702 (change=-0.017665261493910192 %)
[2026-03-04 06:28:16] 2026-03-04 05:27:39,390 | INFO     | right removable region: 182
[2026-03-04 06:28:16] 2026-03-04 05:27:39,390 | INFO     | sum of square deviations: 2060343747.0
[2026-03-04 06:28:16] 2026-03-04 05:27:39,391 | INFO     | sum of deviations: -3805513853.000001
[2026-03-04 06:28:16] 2026-03-04 05:27:39,391 | INFO     | mean x: 1772596346.5
[2026-03-04 06:28:16] 2026-03-04 05:27:39,392 | INFO     | mean y: 2339148.925531915
[2026-03-04 06:28:16] 2026-03-04 05:27:39,392 | INFO     | intersect: 3276375319.9310007
[2026-03-04 06:28:16] 2026-03-04 05:27:39,392 | INFO     | chi2: 0.7883221968713321
[2026-03-04 06:28:16] 2026-03-04 05:27:39,392 | INFO     | current chi2=0.7883221968713321 (change=58.31032915541927 %)
[2026-03-04 06:28:16] 2026-03-04 05:27:39,392 | INFO     | sum of square deviations: 1900284932.0
[2026-03-04 06:28:16] 2026-03-04 05:27:39,393 | INFO     | sum of deviations: -5254174426.999999
[2026-03-04 06:28:16] 2026-03-04 05:27:39,393 | INFO     | mean x: 1772596499.0
[2026-03-04 06:28:16] 2026-03-04 05:27:39,394 | INFO     | mean y: 2340524.0163934426
[2026-03-04 06:28:16] 2026-03-04 05:27:39,394 | INFO     | intersect: 4903464054.282606
[2026-03-04 06:28:16] 2026-03-04 05:27:39,394 | INFO     | chi2: 0.786643578950784
[2026-03-04 06:28:16] 2026-03-04 05:27:39,394 | INFO     | current chi2=0.786643578950784 (change=0.2129355138305348 %)
[2026-03-04 06:28:16] 2026-03-04 05:27:39,394 | INFO     | left removable region: 20
[2026-03-04 06:28:16] 2026-03-04 05:27:39,394 | INFO     | sum of square deviations: 1318277740.5
[2026-03-04 06:28:16] 2026-03-04 05:27:39,395 | INFO     | sum of deviations: 4019328673.999999
[2026-03-04 06:28:16] 2026-03-04 05:27:39,395 | INFO     | mean x: 1772596468.5
[2026-03-04 06:28:16] 2026-03-04 05:27:39,396 | INFO     | mean y: 2353181.8518518517
[2026-03-04 06:28:16] 2026-03-04 05:27:39,396 | INFO     | intersect: -5402158776.736579
[2026-03-04 06:28:16] 2026-03-04 05:27:39,396 | INFO     | chi2: 0.000669645706350945
[2026-03-04 06:28:16] 2026-03-04 05:27:39,396 | INFO     | current memory leak: 3.05 B/s (using 162 data points, chi2=0.00)
[2026-03-04 06:28:16] 2026-03-04 05:27:39,396 | INFO     | could have reported an average CPU frequency of 2768 MHz (10 samples)
[2026-03-04 06:28:16] 2026-03-04 05:27:39,396 | INFO     | ..............................
[2026-03-04 06:28:16] 2026-03-04 05:27:39,397 | INFO     | . Timing measurements:
[2026-03-04 06:28:16] 2026-03-04 05:27:39,397 | INFO     | . get job = 0 s
[2026-03-04 06:28:16] 2026-03-04 05:27:39,397 | INFO     | . initial setup = 7 s
[2026-03-04 06:28:16] 2026-03-04 05:27:39,397 | INFO     | . payload setup = 8 s
[2026-03-04 06:28:16] 2026-03-04 05:27:39,397 | INFO     | . stage-in = 0 s
[2026-03-04 06:28:16] 2026-03-04 05:27:39,397 | INFO     | . payload execution = 11720 s
[2026-03-04 06:28:16] 2026-03-04 05:27:39,397 | INFO     | . stage-out = 1 s
[2026-03-04 06:28:16] 2026-03-04 05:27:39,397 | INFO     | . log creation = 0 s
[2026-03-04 06:28:16] 2026-03-04 05:27:39,397 | INFO     | ..............................
[2026-03-04 06:28:16] 2026-03-04 05:27:39,749 | INFO     | 
[2026-03-04 06:28:16] 2026-03-04 05:27:39,749 | INFO     | job summary report
[2026-03-04 06:28:16] 2026-03-04 05:27:39,749 | INFO     | --------------------------------------------------
[2026-03-04 06:28:16] 2026-03-04 05:27:39,749 | INFO     | PanDA job id: 7036125017
[2026-03-04 06:28:16] 2026-03-04 05:27:39,750 | INFO     | task id: 48848981
[2026-03-04 06:28:16] 2026-03-04 05:27:39,750 | INFO     | errors: (none)
[2026-03-04 06:28:16] 2026-03-04 05:27:39,750 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-04 06:28:16] 2026-03-04 05:27:39,750 | INFO     | pilot state: finished 
[2026-03-04 06:28:16] 2026-03-04 05:27:39,750 | INFO     | transexitcode: 0
[2026-03-04 06:28:16] 2026-03-04 05:27:39,750 | INFO     | exeerrorcode: 0
[2026-03-04 06:28:16] 2026-03-04 05:27:39,750 | INFO     | exeerrordiag: 
[2026-03-04 06:28:16] 2026-03-04 05:27:39,750 | INFO     | exitcode: 0
[2026-03-04 06:28:16] 2026-03-04 05:27:39,750 | INFO     | exitmsg: OK
[2026-03-04 06:28:16] 2026-03-04 05:27:39,750 | INFO     | cpuconsumptiontime: 45469 s
[2026-03-04 06:28:16] 2026-03-04 05:27:39,750 | INFO     | nevents: 400
[2026-03-04 06:28:16] 2026-03-04 05:27:39,750 | INFO     | neventsw: 0
[2026-03-04 06:28:16] 2026-03-04 05:27:39,750 | INFO     | pid: 977647
[2026-03-04 06:28:16] 2026-03-04 05:27:39,751 | INFO     | pgrp: 977647
[2026-03-04 06:28:16] 2026-03-04 05:27:39,751 | INFO     | corecount: 4
[2026-03-04 06:28:16] 2026-03-04 05:27:39,751 | INFO     | event service: False
[2026-03-04 06:28:16] 2026-03-04 05:27:39,751 | INFO     | sizes: {0: 2287165, 11: 2287165, 11732: 2317002, 11733: 2317001, 11735: 2326077, 11736: 2326455}
[2026-03-04 06:28:16] 2026-03-04 05:27:39,751 | INFO     | --------------------------------------------------
[2026-03-04 06:28:16] 2026-03-04 05:27:39,751 | INFO     | 
[2026-03-04 06:28:16] 2026-03-04 05:27:39,751 | INFO     | executing command: ls -lF /scratch/boinc/var/slot92/slots/0
[2026-03-04 06:28:16] 2026-03-04 05:27:39,780 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-04 06:28:16] 2026-03-04 05:27:39,780 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-04 06:28:16] 2026-03-04 05:27:39,780 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-04 06:28:16] 2026-03-04 05:27:39,780 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-04 06:28:16] 2026-03-04 05:27:39,780 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-04 06:28:16] 2026-03-04 05:27:39,780 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-04 06:28:16] 2026-03-04 05:27:39,780 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-04 06:28:16] 2026-03-04 05:27:39,780 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-04 06:28:16] 2026-03-04 05:27:39,780 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-04 06:28:16] 2026-03-04 05:27:39,781 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-04 06:28:16] 2026-03-04 05:27:39,781 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-04 06:28:16] 2026-03-04 05:27:39,781 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-04 06:28:16] 2026-03-04 05:27:39,781 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-04 06:28:16] 2026-03-04 05:27:39,781 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-04 06:28:16] 2026-03-04 05:27:39,781 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-04 06:28:16] 2026-03-04 05:27:39,781 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-04 06:28:16] 2026-03-04 05:27:39,781 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-04 06:28:16] 2026-03-04 05:27:39,781 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-04 06:28:16] 2026-03-04 05:27:39,781 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-04 06:28:16] 2026-03-04 05:27:39,781 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-04 06:28:16] 2026-03-04 05:27:39,782 | INFO     | job 7036125017 has completed (purged errors)
[2026-03-04 06:28:16] 2026-03-04 05:27:39,782 | INFO     | overall cleanup function is called
[2026-03-04 06:28:16] 2026-03-04 05:27:40,791 | INFO     | --- collectZombieJob: --- 10, [977647]
[2026-03-04 06:28:16] 2026-03-04 05:27:40,791 | INFO     | zombie collector waiting for pid 977647
[2026-03-04 06:28:16] 2026-03-04 05:27:40,791 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-04 06:28:16] 2026-03-04 05:27:40,791 | INFO     | collected zombie processes
[2026-03-04 06:28:16] 2026-03-04 05:27:40,791 | INFO     | will attempt to kill all subprocesses of pid=977647
[2026-03-04 06:28:16] 2026-03-04 05:27:41,410 | INFO     | process IDs to be killed: [977647] (in reverse order)
[2026-03-04 06:28:16] 2026-03-04 05:27:41,646 | WARNING  | found no corresponding commands to process id(s)
[2026-03-04 06:28:16] 2026-03-04 05:27:41,647 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-04 06:28:16] 2026-03-04 05:27:41,667 | INFO     | did not find any defunct processes belonging to 977647
[2026-03-04 06:28:16] 2026-03-04 05:27:41,686 | INFO     | did not find any defunct processes belonging to 977647
[2026-03-04 06:28:16] 2026-03-04 05:27:41,686 | INFO     | ready for new job
[2026-03-04 06:28:16] 2026-03-04 05:27:41,686 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-04 06:28:16] 2026-03-04 05:27:41,689 | INFO     | **************************************
[2026-03-04 06:28:16] 2026-03-04 05:27:41,689 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-04 06:28:16] 2026-03-04 05:27:41,689 | INFO     | **************************************
[2026-03-04 06:28:16] 2026-03-04 05:27:41,689 | INFO     | 
[2026-03-04 06:28:16] 2026-03-04 05:27:41,697 | INFO     | architecture information:
[2026-03-04 06:28:16] 2026-03-04 05:27:41,697 | INFO     | executing command: cat /etc/os-release
[2026-03-04 06:28:16] 2026-03-04 05:27:41,719 | INFO     | cat /etc/os-release:
[2026-03-04 06:28:16] NAME="CentOS Linux"
[2026-03-04 06:28:16] VERSION="7 (Core)"
[2026-03-04 06:28:16] ID="centos"
[2026-03-04 06:28:16] ID_LIKE="rhel fedora"
[2026-03-04 06:28:16] VERSION_ID="7"
[2026-03-04 06:28:16] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-04 06:28:16] ANSI_COLOR="0;31"
[2026-03-04 06:28:16] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-04 06:28:16] HOME_URL="https://www.centos.org/"
[2026-03-04 06:28:16] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-04 06:28:16] 
[2026-03-04 06:28:16] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-04 06:28:16] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-04 06:28:16] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-04 06:28:16] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-04 06:28:16] 
[2026-03-04 06:28:16] 2026-03-04 05:27:41,719 | INFO     | **************************************
[2026-03-04 06:28:16] 2026-03-04 05:27:42,222 | INFO     | executing command: df -mP /scratch/boinc/var/slot92/slots/0
[2026-03-04 06:28:16] 2026-03-04 05:27:42,246 | INFO     | sufficient remaining disk space (3318768205824 B)
[2026-03-04 06:28:16] 2026-03-04 05:27:42,249 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-04 06:28:16] 2026-03-04 05:27:42,249 | INFO     | current server update state: UPDATING_FINAL
[2026-03-04 06:28:16] 2026-03-04 05:27:42,249 | INFO     | update_server=False
[2026-03-04 06:28:16] 2026-03-04 05:27:42,249 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-04 06:28:16] 2026-03-04 05:27:42,250 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-04 06:28:16] 2026-03-04 05:27:42,435 | INFO     | all data control threads have been joined
[2026-03-04 06:28:16] 2026-03-04 05:27:42,517 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-03-04 06:28:16] 2026-03-04 05:27:42,517 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-03-04 06:28:16] 2026-03-04 05:27:42,517 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-04 06:28:16] 2026-03-04 05:27:42,518 | INFO     | will abort loop
[2026-03-04 06:28:16] 2026-03-04 05:27:42,909 | INFO     | all payload control threads have been joined
[2026-03-04 06:28:16] 2026-03-04 05:27:43,254 | INFO     | [job] retrieve thread has finished
[2026-03-04 06:28:16] 2026-03-04 05:27:43,441 | INFO     | [data] control thread has finished
[2026-03-04 06:28:16] 2026-03-04 05:27:43,523 | INFO     | [payload] validate_post thread has finished
[2026-03-04 06:28:16] 2026-03-04 05:27:43,524 | INFO     | [job] job monitor thread has finished
[2026-03-04 06:28:16] 2026-03-04 05:27:43,540 | INFO     | all job control threads have been joined
[2026-03-04 06:28:16] 2026-03-04 05:27:43,914 | INFO     | [payload] control thread has finished
[2026-03-04 06:28:16] 2026-03-04 05:27:43,960 | INFO     | [job] validate thread has finished
[2026-03-04 06:28:16] 2026-03-04 05:27:44,151 | INFO     | [job] create_data_payload thread has finished
[2026-03-04 06:28:16] 2026-03-04 05:27:44,157 | INFO     | [payload] execute_payloads thread has finished
[2026-03-04 06:28:16] 2026-03-04 05:27:44,255 | INFO     | [data] copytool_out thread has finished
[2026-03-04 06:28:16] 2026-03-04 05:27:44,326 | INFO     | [payload] validate_pre thread has finished
[2026-03-04 06:28:16] 2026-03-04 05:27:44,496 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-04 06:28:16] 2026-03-04 05:27:44,504 | INFO     | [payload] failed_post thread has finished
[2026-03-04 06:28:16] 2026-03-04 05:27:44,545 | INFO     | [job] control thread has finished
[2026-03-04 06:28:16] 2026-03-04 05:27:44,664 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-04 06:28:16] 2026-03-04 05:27:44,665 | INFO     | [data] copytool_in thread has finished
[2026-03-04 06:28:16] 2026-03-04 05:27:45,357 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-04 06:28:16] 2026-03-04 05:27:45,501 | INFO     | [job] queue monitor thread has finished
[2026-03-04 06:28:16] 2026-03-04 05:27:49,362 | INFO     | [data] queue_monitor thread has finished
[2026-03-04 06:28:16] 2026-03-04 05:28:09,480 | INFO     | [monitor] cgroup control has ended
[2026-03-04 06:28:16] 2026-03-04 05:28:11,441 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23377955940160)>', '<ExcThread(monitor, started 23377718032128)>']
[2026-03-04 06:28:16] 2026-03-04 05:28:12,634 | INFO     | PID=972591 has CPU usage=9.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-04 06:28:16] 2026-03-04 05:28:12,634 | INFO     | .. there are 18 such processes running
[2026-03-04 06:28:16] 2026-03-04 05:28:12,634 | INFO     | found 0 job(s) in 20 queues
[2026-03-04 06:28:16] 2026-03-04 05:28:12,634 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-04 06:28:16] 2026-03-04 05:28:12,634 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-04 06:28:16] 2026-03-04 05:28:12,634 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-04 06:28:16] 2026-03-04 05:28:12,634 | INFO     | [monitor] control thread has ended
[2026-03-04 06:28:16] 2026-03-04 05:28:16,466 | INFO     | all workflow threads have been joined
[2026-03-04 06:28:16] 2026-03-04 05:28:16,467 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-04 06:28:16] 2026-03-04 05:28:16,467 | INFO     | traces error code: 0
[2026-03-04 06:28:16] 2026-03-04 05:28:16,467 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-04 06:28:16] 2026-03-04 05:28:16,595 [wrapper] ==== pilot stdout END ====
[2026-03-04 06:28:16] 2026-03-04 05:28:16,599 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-04 06:28:16] 2026-03-04 05:28:16,603 [wrapper] pilotpid: 972591
[2026-03-04 06:28:16] 2026-03-04 05:28:16,606 [wrapper] Pilot exit status: 0
[2026-03-04 06:28:16] 2026-03-04 05:28:16,619 [wrapper] pandaids: 7036125017
[2026-03-04 06:28:16] 2026-03-04 05:28:16,771 [wrapper] cleanup supervisor_pilot 1259241 972592
[2026-03-04 06:28:16] 2026-03-04 05:28:16,775 [wrapper] Test setup, not cleaning
[2026-03-04 06:28:16] 2026-03-04 05:28:16,778 [wrapper] apfmon messages muted
[2026-03-04 06:28:16] 2026-03-04 05:28:16,781 [wrapper] ==== wrapper stdout END ====
[2026-03-04 06:28:16] 2026-03-04 05:28:16,785 [wrapper] ==== wrapper stderr END ====
[2026-03-04 06:28:16]  *** Error codes and diagnostics ***
[2026-03-04 06:28:16]     "exeErrorCode": 0,
[2026-03-04 06:28:16]     "exeErrorDiag": "",
[2026-03-04 06:28:16]     "pilotErrorCode": 0,
[2026-03-04 06:28:16]     "pilotErrorDiag": "",
[2026-03-04 06:28:16]  *** Listing of results directory ***
[2026-03-04 06:28:16] total 485720
[2026-03-04 06:28:16] -rw-r--r-- 1 boinc boinc    584627 Mar  2 21:01 pilot3.tar.gz
[2026-03-04 06:28:16] -rwx------ 1 boinc boinc     36322 Mar  2 21:02 runpilot2-wrapper.sh
[2026-03-04 06:28:16] -rw-r--r-- 1 boinc boinc      5111 Mar  2 21:03 queuedata.json
[2026-03-04 06:28:16] -rw-r--r-- 1 boinc boinc       100 Mar  4 03:11 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-04 06:28:16] -rwxr-xr-x 1 boinc boinc      7986 Mar  4 03:11 run_atlas
[2026-03-04 06:28:16] -rw-r--r-- 1 boinc boinc       105 Mar  4 03:11 job.xml
[2026-03-04 06:28:16] -rw-r--r-- 2 boinc boinc 271616547 Mar  4 03:11 EVNT.48456409._000001.pool.root.1
[2026-03-04 06:28:16] -rw-r--r-- 1 boinc boinc      6698 Mar  4 03:11 init_data.xml
[2026-03-04 06:28:16] -rw-r--r-- 2 boinc boinc     15845 Mar  4 03:11 start_atlas.sh
[2026-03-04 06:28:16] drwxrwx--x 2 boinc boinc      4096 Mar  4 03:11 shared
[2026-03-04 06:28:16] -rw-r--r-- 2 boinc boinc    597970 Mar  4 03:11 input.tar.gz
[2026-03-04 06:28:16] -rw-r--r-- 1 boinc boinc         0 Mar  4 03:11 boinc_lockfile
[2026-03-04 06:28:16] -rw-r--r-- 1 boinc boinc      2632 Mar  4 03:11 pandaJob.out
[2026-03-04 06:28:16] -rw------- 1 boinc boinc    998484 Mar  4 03:11 agis_schedconf.cvmfs.json
[2026-03-04 06:28:16] -rw------- 1 boinc boinc       440 Mar  4 03:11 workernode_map.json
[2026-03-04 06:28:16] drwx------ 5 boinc boinc      4096 Mar  4 03:11 pilot3
[2026-03-04 06:28:16] -rw------- 1 boinc boinc 217831306 Mar  4 06:27 HITS.48848981._000005.pool.root.1
[2026-03-04 06:28:16] -rw-r--r-- 1 boinc boinc       530 Mar  4 06:27 boinc_task_state.xml
[2026-03-04 06:28:16] -rw------- 1 boinc boinc        95 Mar  4 06:27 pilot_heartbeat.json
[2026-03-04 06:28:16] -rw------- 1 boinc boinc      1027 Mar  4 06:27 memory_monitor_summary.json
[2026-03-04 06:28:16] -rw------- 1 boinc boinc   1516092 Mar  4 06:27 agis_ddmendpoints.agis.ALL.json
[2026-03-04 06:28:16] -rw------- 1 boinc boinc    355849 Mar  4 06:27 log.48848981._000005.job.log.tgz.1
[2026-03-04 06:28:16] -rw------- 1 boinc boinc      6333 Mar  4 06:27 heartbeat.json
[2026-03-04 06:28:16] -rw-r--r-- 1 boinc boinc      8192 Mar  4 06:28 boinc_mmap_file
[2026-03-04 06:28:16] -rw-r--r-- 1 boinc boinc        28 Mar  4 06:28 wrapper_checkpoint.txt
[2026-03-04 06:28:16] -rw------- 1 boinc boinc      5016 Mar  4 06:28 pilotlog.txt
[2026-03-04 06:28:16] -rw------- 1 boinc boinc   1642319 Mar  4 06:28 log.48848981._000005.job.log.1
[2026-03-04 06:28:16] -rw------- 1 boinc boinc       357 Mar  4 06:28 output.list
[2026-03-04 06:28:16] -rw-r--r-- 1 boinc boinc       620 Mar  4 06:28 runtime_log
[2026-03-04 06:28:16] -rw------- 1 boinc boinc   2017280 Mar  4 06:28 result.tar.gz
[2026-03-04 06:28:16] -rw-r--r-- 1 boinc boinc      9205 Mar  4 06:28 runtime_log.err
[2026-03-04 06:28:16] -rw------- 1 boinc boinc       664 Mar  4 06:28 QshKDmdeOH9n9Rq4apOajLDm4fhM0noT9bVooX4SDmEoCLDmr8Ilwn.diag
[2026-03-04 06:28:16] -rw-r--r-- 1 boinc boinc     20884 Mar  4 06:28 stderr.txt
[2026-03-04 06:28:16] HITS file was successfully produced:
[2026-03-04 06:28:16] -rw------- 1 boinc boinc 217831306 Mar  4 06:27 shared/HITS.pool.root.1
[2026-03-04 06:28:16]  *** Contents of shared directory: ***
[2026-03-04 06:28:16] total 480560
[2026-03-04 06:28:16] -rw-r--r-- 2 boinc boinc 271616547 Mar  4 03:11 ATLAS.root_0
[2026-03-04 06:28:16] -rw-r--r-- 2 boinc boinc     15845 Mar  4 03:11 start_atlas.sh
[2026-03-04 06:28:16] -rw-r--r-- 2 boinc boinc    597970 Mar  4 03:11 input.tar.gz
[2026-03-04 06:28:16] -rw------- 1 boinc boinc 217831306 Mar  4 06:27 HITS.pool.root.1
[2026-03-04 06:28:16] -rw------- 1 boinc boinc   2017280 Mar  4 06:28 result.tar.gz
06:28:18 (968598): run_atlas exited; CPU time 46120.271406
06:28:18 (968598): called boinc_finish(0)

</stderr_txt>
]]>

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