Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
20:23:23 (29699): wrapper (7.7.26015): starting
20:23:23 (29699): wrapper: running run_atlas (--nthreads 8)
[2026-03-03 20:23:23] Arguments: --nthreads 8
[2026-03-03 20:23:23] Threads: 8
[2026-03-03 20:23:23] Checking for CVMFS
[2026-03-03 20:23:25] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-03 20:23:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-03 20:23:26] Running cvmfs_config stat atlas.cern.ch
[2026-03-03 20:23:27] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-03 20:23:27] 2.11.2.0 20999 112149 132164 156855 2 53 21247633 25165825 899 130560 155 33461476 99.821 22662483 793 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-03-03 20:23:27] CVMFS is ok
[2026-03-03 20:23:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-03 20:23:27] Checking for apptainer binary...
[2026-03-03 20:23:27] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-03 20:23:27] Running /usr/bin/apptainer --version
[2026-03-03 20:23:27] apptainer version 1.3.2-1.el7
[2026-03-03 20:23:27] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-03 20:23:46] cg-vwn368.simple-grid.lan
[2026-03-03 20:23:46] apptainer works
[2026-03-03 20:23:46] Set ATHENA_PROC_NUMBER=8
[2026-03-03 20:23:46] Set ATHENA_CORE_NUMBER=8
[2026-03-03 20:23:46] Starting ATLAS job with PandaID=7036119812
[2026-03-03 20:23:46] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-04 02:50:29]  *** The last 200 lines of the pilot log: ***
[2026-03-04 02:50:29] 2026-03-04 01:49:16,874 | INFO     | chi2: 9.778442262226706
[2026-03-04 02:50:29] 2026-03-04 01:49:16,874 | INFO     | sum of square deviations: 14831839022.0
[2026-03-04 02:50:29] 2026-03-04 01:49:16,879 | INFO     | sum of deviations: 224114989054.0
[2026-03-04 02:50:29] 2026-03-04 01:49:16,879 | INFO     | mean x: 1772577592.0
[2026-03-04 02:50:29] 2026-03-04 01:49:16,879 | INFO     | mean y: 2429883.1652892563
[2026-03-04 02:50:29] 2026-03-04 01:49:16,879 | INFO     | intersect: -26781922821.795296
[2026-03-04 02:50:29] 2026-03-04 01:49:16,880 | INFO     | chi2: 8.220873225916106
[2026-03-04 02:50:29] 2026-03-04 01:49:16,880 | INFO     | current chi2=8.220873225916106 (change=15.928600839904297 %)
[2026-03-04 02:50:29] 2026-03-04 01:49:16,880 | INFO     | right removable region: 362
[2026-03-04 02:50:29] 2026-03-04 01:49:16,881 | INFO     | sum of square deviations: 14831839022.0
[2026-03-04 02:50:29] 2026-03-04 01:49:16,885 | INFO     | sum of deviations: 48731824387.00002
[2026-03-04 02:50:29] 2026-03-04 01:49:16,885 | INFO     | mean x: 1772577897.0
[2026-03-04 02:50:29] 2026-03-04 01:49:16,885 | INFO     | mean y: 2449878.371900826
[2026-03-04 02:50:29] 2026-03-04 01:49:16,886 | INFO     | intersect: -5821571988.421106
[2026-03-04 02:50:29] 2026-03-04 01:49:16,886 | INFO     | chi2: 4.861745133715576
[2026-03-04 02:50:29] 2026-03-04 01:49:16,886 | INFO     | current chi2=4.861745133715576 (change=50.28098542345455 %)
[2026-03-04 02:50:29] 2026-03-04 01:49:16,887 | INFO     | sum of square deviations: 14227353269.5
[2026-03-04 02:50:29] 2026-03-04 01:49:16,897 | INFO     | sum of deviations: -49158558183.0
[2026-03-04 02:50:29] 2026-03-04 01:49:16,898 | INFO     | mean x: 1772578049.5
[2026-03-04 02:50:29] 2026-03-04 01:49:16,898 | INFO     | mean y: 2474554.8324022344
[2026-03-04 02:50:29] 2026-03-04 01:49:16,898 | INFO     | intersect: 6127112042.189651
[2026-03-04 02:50:29] 2026-03-04 01:49:16,899 | INFO     | chi2: 2.1415630282562255
[2026-03-04 02:50:29] 2026-03-04 01:49:16,899 | INFO     | current chi2=2.1415630282562255 (change=55.950734368925225 %)
[2026-03-04 02:50:29] 2026-03-04 01:49:16,899 | INFO     | sum of square deviations: 13639518992.0
[2026-03-04 02:50:29] 2026-03-04 01:49:16,904 | INFO     | sum of deviations: -71999809628.0
[2026-03-04 02:50:29] 2026-03-04 01:49:16,904 | INFO     | mean x: 1772578202.0
[2026-03-04 02:50:29] 2026-03-04 01:49:16,904 | INFO     | mean y: 2480439.4107648726
[2026-03-04 02:50:29] 2026-03-04 01:49:16,904 | INFO     | intersect: 9359503452.436275
[2026-03-04 02:50:29] 2026-03-04 01:49:16,905 | INFO     | chi2: 1.8553369701095563
[2026-03-04 02:50:29] 2026-03-04 01:49:16,905 | INFO     | current chi2=1.8553369701095563 (change=13.36528761330595 %)
[2026-03-04 02:50:29] 2026-03-04 01:49:16,905 | INFO     | left removable region: 30
[2026-03-04 02:50:29] 2026-03-04 01:49:16,906 | INFO     | sum of square deviations: 11347200663.0
[2026-03-04 02:50:29] 2026-03-04 01:49:16,909 | INFO     | sum of deviations: -7793670886.500004
[2026-03-04 02:50:29] 2026-03-04 01:49:16,910 | INFO     | mean x: 1772578476.5
[2026-03-04 02:50:29] 2026-03-04 01:49:16,910 | INFO     | mean y: 2488680.0210843375
[2026-03-04 02:50:29] 2026-03-04 01:49:16,910 | INFO     | intersect: 1219960167.1854055
[2026-03-04 02:50:29] 2026-03-04 01:49:16,910 | INFO     | chi2: 0.09451474657131075
[2026-03-04 02:50:29] 2026-03-04 01:49:16,911 | INFO     | current memory leak: -0.69 B/s (using 332 data points, chi2=0.09)
[2026-03-04 02:50:29] 2026-03-04 01:49:16,911 | INFO     | could have reported an average CPU frequency of 1999 MHz (16 samples)
[2026-03-04 02:50:29] 2026-03-04 01:49:16,918 | INFO     | ..............................
[2026-03-04 02:50:29] 2026-03-04 01:49:16,918 | INFO     | . Timing measurements:
[2026-03-04 02:50:29] 2026-03-04 01:49:16,918 | INFO     | . get job = 1 s
[2026-03-04 02:50:29] 2026-03-04 01:49:16,918 | INFO     | . initial setup = 126 s
[2026-03-04 02:50:29] 2026-03-04 01:49:16,918 | INFO     | . payload setup = 162 s
[2026-03-04 02:50:29] 2026-03-04 01:49:16,918 | INFO     | . stage-in = 0 s
[2026-03-04 02:50:29] 2026-03-04 01:49:16,919 | INFO     | . payload execution = 22531 s
[2026-03-04 02:50:29] 2026-03-04 01:49:16,919 | INFO     | . stage-out = 4 s
[2026-03-04 02:50:29] 2026-03-04 01:49:16,919 | INFO     | . log creation = 1 s
[2026-03-04 02:50:29] 2026-03-04 01:49:16,919 | INFO     | ..............................
[2026-03-04 02:50:29] 2026-03-04 01:49:17,159 | WARNING  | process 5706 can no longer be monitored (due to stat problems) - aborting
[2026-03-04 02:50:29] 2026-03-04 01:49:17,160 | INFO     | using path: /var/lib/boinc/slots/6/PanDA_Pilot-7036119812/memory_monitor_summary.json (trf name=prmon)
[2026-03-04 02:50:29] 2026-03-04 01:49:17,161 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 3534541 B
[2026-03-04 02:50:29] 2026-03-04 01:49:17,161 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15817 B
[2026-03-04 02:50:29] 2026-03-04 01:49:17,161 | INFO     | executing command: df -mP /var/lib/boinc/slots/6
[2026-03-04 02:50:29] 2026-03-04 01:49:17,176 | INFO     | 
[2026-03-04 02:50:29] 2026-03-04 01:49:17,177 | INFO     | job summary report
[2026-03-04 02:50:29] 2026-03-04 01:49:17,177 | INFO     | --------------------------------------------------
[2026-03-04 02:50:29] 2026-03-04 01:49:17,177 | INFO     | PanDA job id: 7036119812
[2026-03-04 02:50:29] 2026-03-04 01:49:17,177 | INFO     | task id: 48848321
[2026-03-04 02:50:29] 2026-03-04 01:49:17,177 | INFO     | errors: (none)
[2026-03-04 02:50:29] 2026-03-04 01:49:17,177 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-04 02:50:29] 2026-03-04 01:49:17,178 | INFO     | pilot state: finished 
[2026-03-04 02:50:29] 2026-03-04 01:49:17,178 | INFO     | transexitcode: 0
[2026-03-04 02:50:29] 2026-03-04 01:49:17,178 | INFO     | exeerrorcode: 0
[2026-03-04 02:50:29] 2026-03-04 01:49:17,178 | INFO     | exeerrordiag: 
[2026-03-04 02:50:29] 2026-03-04 01:49:17,178 | INFO     | exitcode: 0
[2026-03-04 02:50:29] 2026-03-04 01:49:17,178 | INFO     | exitmsg: OK
[2026-03-04 02:50:29] 2026-03-04 01:49:17,178 | INFO     | cpuconsumptiontime: 93060 s
[2026-03-04 02:50:29] 2026-03-04 01:49:17,178 | INFO     | nevents: 400
[2026-03-04 02:50:29] 2026-03-04 01:49:17,178 | INFO     | neventsw: 0
[2026-03-04 02:50:29] 2026-03-04 01:49:17,179 | INFO     | pid: 5706
[2026-03-04 02:50:29] 2026-03-04 01:49:17,179 | INFO     | pgrp: 5706
[2026-03-04 02:50:29] 2026-03-04 01:49:17,179 | INFO     | corecount: 8
[2026-03-04 02:50:29] 2026-03-04 01:49:17,179 | INFO     | event service: False
[2026-03-04 02:50:29] 2026-03-04 01:49:17,179 | INFO     | sizes: {0: 2286046, 1: 2287104, 2: 2287164, 13: 2287192, 22698: 2321708, 22703: 2330890, 22704: 2331028}
[2026-03-04 02:50:29] 2026-03-04 01:49:17,179 | INFO     | --------------------------------------------------
[2026-03-04 02:50:29] 2026-03-04 01:49:17,179 | INFO     | 
[2026-03-04 02:50:29] 2026-03-04 01:49:17,180 | INFO     | executing command: ls -lF /var/lib/boinc/slots/6
[2026-03-04 02:50:29] 2026-03-04 01:49:17,510 | INFO     | sufficient remaining disk space (497034461184 B)
[2026-03-04 02:50:29] 2026-03-04 01:49:17,510 | INFO     | work directory size check will use 5033164800 B as a max limit (20% grace limit added, divider=1)
[2026-03-04 02:50:29] 2026-03-04 01:49:17,511 | INFO     | size of work directory /var/lib/boinc/slots/6/PanDA_Pilot-7036119812: 3945774 B (within 5033164800 B limit)
[2026-03-04 02:50:29] 2026-03-04 01:49:17,511 | INFO     | pfn file=/var/lib/boinc/slots/6/PanDA_Pilot-7036119812/HITS.48848321._000044.pool.root.1 does not exist (skip from workdir size calculation)
[2026-03-04 02:50:29] 2026-03-04 01:49:17,511 | INFO     | total size of present files: 0 B (workdir size: 3945774 B)
[2026-03-04 02:50:29] 2026-03-04 01:49:17,512 | INFO     | output file size check: skipping output file /var/lib/boinc/slots/6/PanDA_Pilot-7036119812/HITS.48848321._000044.pool.root.1 since it does not exist
[2026-03-04 02:50:29] 2026-03-04 01:49:17,628 | INFO     | number of running child processes to parent process 5706: 1
[2026-03-04 02:50:29] 2026-03-04 01:49:17,628 | INFO     | maximum number of monitored processes: 8
[2026-03-04 02:50:29] 2026-03-04 01:49:17,628 | INFO     | aborting job monitoring since job object (job id=7036119812) has expired
[2026-03-04 02:50:29] 2026-03-04 01:49:17,689 | INFO     | time since job start (22717s) is within the limit (349056.0s)
[2026-03-04 02:50:29] 2026-03-04 01:49:17,893 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-04 02:50:29] 2026-03-04 01:49:17,894 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-04 02:50:29] 2026-03-04 01:49:17,894 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-04 02:50:29] 2026-03-04 01:49:17,894 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-04 02:50:29] 2026-03-04 01:49:17,894 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-04 02:50:29] 2026-03-04 01:49:17,894 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-04 02:50:29] 2026-03-04 01:49:17,894 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-04 02:50:29] 2026-03-04 01:49:17,895 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-04 02:50:29] 2026-03-04 01:49:17,895 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-04 02:50:29] 2026-03-04 01:49:17,895 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-04 02:50:29] 2026-03-04 01:49:17,895 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-04 02:50:29] 2026-03-04 01:49:17,895 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-04 02:50:29] 2026-03-04 01:49:17,895 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-04 02:50:29] 2026-03-04 01:49:17,895 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-04 02:50:29] 2026-03-04 01:49:17,895 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-04 02:50:29] 2026-03-04 01:49:17,895 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-04 02:50:29] 2026-03-04 01:49:17,896 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-04 02:50:29] 2026-03-04 01:49:17,896 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-04 02:50:29] 2026-03-04 01:49:17,896 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-04 02:50:29] 2026-03-04 01:49:17,896 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-04 02:50:29] 2026-03-04 01:49:17,896 | INFO     | job 7036119812 has completed (purged errors)
[2026-03-04 02:50:29] 2026-03-04 01:49:17,896 | INFO     | overall cleanup function is called
[2026-03-04 02:50:29] 2026-03-04 01:49:18,910 | INFO     | --- collectZombieJob: --- 10, [5706]
[2026-03-04 02:50:29] 2026-03-04 01:49:18,910 | INFO     | zombie collector waiting for pid 5706
[2026-03-04 02:50:29] 2026-03-04 01:49:18,910 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-04 02:50:29] 2026-03-04 01:49:18,910 | INFO     | collected zombie processes
[2026-03-04 02:50:29] 2026-03-04 01:49:18,910 | INFO     | will attempt to kill all subprocesses of pid=5706
[2026-03-04 02:50:29] 2026-03-04 01:49:19,000 | INFO     | process IDs to be killed: [5706] (in reverse order)
[2026-03-04 02:50:29] 2026-03-04 01:49:20,116 | WARNING  | found no corresponding commands to process id(s)
[2026-03-04 02:50:29] 2026-03-04 01:49:20,117 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-04 02:50:29] 2026-03-04 01:49:20,119 | INFO     | did not find any defunct processes belonging to 5706
[2026-03-04 02:50:29] 2026-03-04 01:49:20,128 | INFO     | did not find any defunct processes belonging to 5706
[2026-03-04 02:50:29] 2026-03-04 01:49:20,128 | INFO     | ready for new job
[2026-03-04 02:50:29] 2026-03-04 01:49:20,128 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-04 02:50:29] 2026-03-04 01:49:20,131 | INFO     | **************************************
[2026-03-04 02:50:29] 2026-03-04 01:49:20,131 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-04 02:50:29] 2026-03-04 01:49:20,131 | INFO     | **************************************
[2026-03-04 02:50:29] 2026-03-04 01:49:20,131 | INFO     | 
[2026-03-04 02:50:29] 2026-03-04 01:49:20,132 | INFO     | pilot is running in a VM
[2026-03-04 02:50:29] 2026-03-04 01:49:20,132 | INFO     | architecture information:
[2026-03-04 02:50:29] 2026-03-04 01:49:20,139 | INFO     | executing command: cat /etc/os-release
[2026-03-04 02:50:29] 2026-03-04 01:49:20,388 | INFO     | cat /etc/os-release:
[2026-03-04 02:50:29] NAME="CentOS Linux"
[2026-03-04 02:50:29] VERSION="7 (Core)"
[2026-03-04 02:50:29] ID="centos"
[2026-03-04 02:50:29] ID_LIKE="rhel fedora"
[2026-03-04 02:50:29] VERSION_ID="7"
[2026-03-04 02:50:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-04 02:50:29] ANSI_COLOR="0;31"
[2026-03-04 02:50:29] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-04 02:50:29] HOME_URL="https://www.centos.org/"
[2026-03-04 02:50:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-04 02:50:29] 
[2026-03-04 02:50:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-04 02:50:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-04 02:50:29] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-04 02:50:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-04 02:50:29] 
[2026-03-04 02:50:29] 2026-03-04 01:49:20,389 | INFO     | **************************************
[2026-03-04 02:50:29] 2026-03-04 01:49:20,893 | INFO     | executing command: df -mP /var/lib/boinc/slots/6
[2026-03-04 02:50:29] 2026-03-04 01:49:21,134 | INFO     | sufficient remaining disk space (497042849792 B)
[2026-03-04 02:50:29] 2026-03-04 01:49:21,135 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-04 02:50:29] 2026-03-04 01:49:21,135 | INFO     | current server update state: UPDATING_FINAL
[2026-03-04 02:50:29] 2026-03-04 01:49:21,135 | INFO     | update_server=False
[2026-03-04 02:50:29] 2026-03-04 01:49:21,135 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-04 02:50:29] 2026-03-04 01:49:21,140 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-04 02:50:29] 2026-03-04 01:49:21,140 | INFO     | aborting loop
[2026-03-04 02:50:29] 2026-03-04 01:49:21,662 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-04 02:50:29] 2026-03-04 01:49:21,760 | INFO     | all data control threads have been joined
[2026-03-04 02:50:29] 2026-03-04 01:49:21,809 | INFO     | all job control threads have been joined
[2026-03-04 02:50:29] 2026-03-04 01:49:22,141 | INFO     | [job] retrieve thread has finished
[2026-03-04 02:50:29] 2026-03-04 01:49:22,146 | INFO     | [job] job monitor thread has finished
[2026-03-04 02:50:29] 2026-03-04 01:49:22,150 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-04 02:50:29] 2026-03-04 01:49:22,568 | INFO     | [payload] validate_pre thread has finished
[2026-03-04 02:50:29] 2026-03-04 01:49:22,617 | INFO     | [job] create_data_payload thread has finished
[2026-03-04 02:50:29] 2026-03-04 01:49:22,618 | INFO     | all payload control threads have been joined
[2026-03-04 02:50:29] 2026-03-04 01:49:22,630 | INFO     | [payload] execute_payloads thread has finished
[2026-03-04 02:50:29] 2026-03-04 01:49:22,712 | INFO     | [job] validate thread has finished
[2026-03-04 02:50:29] 2026-03-04 01:49:22,766 | INFO     | [data] control thread has finished
[2026-03-04 02:50:29] 2026-03-04 01:49:22,815 | INFO     | [job] control thread has finished
[2026-03-04 02:50:29] 2026-03-04 01:49:22,865 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-04 02:50:29] 2026-03-04 01:49:22,974 | INFO     | [payload] failed_post thread has finished
[2026-03-04 02:50:29] 2026-03-04 01:49:23,077 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-04 02:50:29] 2026-03-04 01:49:23,156 | INFO     | [job] queue monitor thread has finished
[2026-03-04 02:50:29] 2026-03-04 01:49:23,223 | INFO     | [data] copytool_in thread has finished
[2026-03-04 02:50:29] 2026-03-04 01:49:23,471 | INFO     | [payload] validate_post thread has finished
[2026-03-04 02:50:29] 2026-03-04 01:49:23,623 | INFO     | [payload] control thread has finished
[2026-03-04 02:50:29] 2026-03-04 01:49:23,669 | INFO     | [data] copytool_out thread has finished
[2026-03-04 02:50:29] 2026-03-04 01:49:26,874 | INFO     | [data] queue_monitor thread has finished
[2026-03-04 02:50:29] 2026-03-04 01:49:50,814 | INFO     | PID=1267 has CPU usage=2.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-03-04 02:50:29] 2026-03-04 01:49:50,814 | INFO     | .. there are 2 such processes running
[2026-03-04 02:50:29] 2026-03-04 01:49:50,814 | INFO     | found 0 job(s) in 20 queues
[2026-03-04 02:50:29] 2026-03-04 01:49:50,814 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-04 02:50:29] 2026-03-04 01:49:50,814 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-04 02:50:29] 2026-03-04 01:50:18,056 | INFO     | [monitor] cgroup control has ended
[2026-03-04 02:50:29] 2026-03-04 01:50:18,254 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139747818051392)>', '<ExcThread(monitor, started 139747523536640)>']
[2026-03-04 02:50:29] 2026-03-04 01:50:18,980 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-04 02:50:29] 2026-03-04 01:50:18,980 | INFO     | [monitor] control thread has ended
[2026-03-04 02:50:29] 2026-03-04 01:50:23,280 | INFO     | all workflow threads have been joined
[2026-03-04 02:50:29] 2026-03-04 01:50:23,280 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-04 02:50:29] 2026-03-04 01:50:23,280 | INFO     | traces error code: 0
[2026-03-04 02:50:29] 2026-03-04 01:50:23,281 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-04 02:50:29] 2026-03-04 01:50:23,702 [wrapper] ==== pilot stdout END ====
[2026-03-04 02:50:29] 2026-03-04 01:50:23,833 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-04 02:50:29] 2026-03-04 01:50:23,935 [wrapper] pilotpid: 1267
[2026-03-04 02:50:29] 2026-03-04 01:50:24,022 [wrapper] Pilot exit status: 0
[2026-03-04 02:50:29] 2026-03-04 01:50:24,565 [wrapper] pandaids: 7036119812
[2026-03-04 02:50:29] 2026-03-04 01:50:25,572 [wrapper] cleanup supervisor_pilot 23755 1268
[2026-03-04 02:50:29] 2026-03-04 01:50:25,646 [wrapper] Test setup, not cleaning
[2026-03-04 02:50:29] 2026-03-04 01:50:25,694 [wrapper] apfmon messages muted
[2026-03-04 02:50:29] 2026-03-04 01:50:25,801 [wrapper] ==== wrapper stdout END ====
[2026-03-04 02:50:29] 2026-03-04 01:50:25,871 [wrapper] ==== wrapper stderr END ====
[2026-03-04 02:50:29]  *** Error codes and diagnostics ***
[2026-03-04 02:50:29]     "exeErrorCode": 0,
[2026-03-04 02:50:29]     "exeErrorDiag": "",
[2026-03-04 02:50:29]     "pilotErrorCode": 0,
[2026-03-04 02:50:29]     "pilotErrorDiag": "",
[2026-03-04 02:50:29]  *** Listing of results directory ***
[2026-03-04 02:50:29] total 386716
[2026-03-04 02:50:29] -rw-r--r--. 1 boinc boinc    584627 Mar  2 21:01 pilot3.tar.gz
[2026-03-04 02:50:29] -rwx------. 1 boinc boinc     36322 Mar  2 21:01 runpilot2-wrapper.sh
[2026-03-04 02:50:29] -rw-r--r--. 1 boinc boinc      5111 Mar  2 21:03 queuedata.json
[2026-03-04 02:50:29] -rw-r--r--. 1 boinc boinc       100 Mar  3 20:23 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-04 02:50:29] -rwxr-xr-x. 1 boinc boinc      7986 Mar  3 20:23 run_atlas
[2026-03-04 02:50:29] -rw-r--r--. 1 boinc boinc       105 Mar  3 20:23 job.xml
[2026-03-04 02:50:29] -rw-r--r--. 1 boinc boinc      6390 Mar  3 20:23 init_data.xml
[2026-03-04 02:50:29] -rw-r--r--. 2 boinc boinc 221351936 Mar  3 20:23 EVNT.48455470._000002.pool.root.1
[2026-03-04 02:50:29] -rw-r--r--. 2 boinc boinc     15845 Mar  3 20:23 start_atlas.sh
[2026-03-04 02:50:29] drwxrwx--x. 2 boinc boinc        68 Mar  3 20:23 shared
[2026-03-04 02:50:29] -rw-r--r--. 2 boinc boinc    597968 Mar  3 20:23 input.tar.gz
[2026-03-04 02:50:29] -rw-r--r--. 1 boinc boinc         0 Mar  3 20:23 boinc_lockfile
[2026-03-04 02:50:29] -rw-r--r--. 1 boinc boinc      2611 Mar  3 20:23 pandaJob.out
[2026-03-04 02:50:29] -rw-------. 1 boinc boinc       415 Mar  3 20:30 workernode_map.json
[2026-03-04 02:50:29] -rw-------. 1 boinc boinc    998476 Mar  3 20:30 agis_schedconf.cvmfs.json
[2026-03-04 02:50:29] drwx------. 5 boinc boinc      4096 Mar  3 20:30 pilot3
[2026-03-04 02:50:29] -rw-------. 1 boinc boinc 163229212 Mar  4 02:47 HITS.48848321._000044.pool.root.1
[2026-03-04 02:50:29] -rw-r--r--. 1 boinc boinc       531 Mar  4 02:47 boinc_task_state.xml
[2026-03-04 02:50:29] -rw-------. 1 boinc boinc      1018 Mar  4 02:49 memory_monitor_summary.json
[2026-03-04 02:50:29] -rw-------. 1 boinc boinc   1516092 Mar  4 02:49 agis_ddmendpoints.agis.ALL.json
[2026-03-04 02:50:29] -rw-------. 1 boinc boinc    585804 Mar  4 02:49 log.48848321._000044.job.log.tgz.1
[2026-03-04 02:50:29] -rw-------. 1 boinc boinc      6312 Mar  4 02:49 heartbeat.json
[2026-03-04 02:50:29] -rw-------. 1 boinc boinc        95 Mar  4 02:49 pilot_heartbeat.json
[2026-03-04 02:50:29] -rw-------. 1 boinc boinc      4879 Mar  4 02:50 pilotlog.txt
[2026-03-04 02:50:29] -rw-------. 1 boinc boinc   3165953 Mar  4 02:50 log.48848321._000044.job.log.1
[2026-03-04 02:50:29] -rw-------. 1 boinc boinc       357 Mar  4 02:50 output.list
[2026-03-04 02:50:29] -rw-r--r--. 1 boinc boinc       620 Mar  4 02:50 runtime_log
[2026-03-04 02:50:29] -rw-------. 1 boinc boinc   3768320 Mar  4 02:50 result.tar.gz
[2026-03-04 02:50:29] -rw-r--r--. 1 boinc boinc      8816 Mar  4 02:50 runtime_log.err
[2026-03-04 02:50:29] -rw-------. 1 boinc boinc       656 Mar  4 02:50 NWVMDmgdOH9n9Rq4apOajLDm4fhM0noT9bVooX4SDm0nCLDmXDIxkn.diag
[2026-03-04 02:50:29] -rw-r--r--. 1 boinc boinc      8192 Mar  4 02:50 boinc_mmap_file
[2026-03-04 02:50:29] -rw-r--r--. 1 boinc boinc        28 Mar  4 02:50 wrapper_checkpoint.txt
[2026-03-04 02:50:29] -rw-r--r--. 1 boinc boinc     21274 Mar  4 02:50 stderr.txt
[2026-03-04 02:50:29] HITS file was successfully produced:
[2026-03-04 02:50:29] -rw-------. 1 boinc boinc 163229212 Mar  4 02:47 shared/HITS.pool.root.1
[2026-03-04 02:50:29]  *** Contents of shared directory: ***
[2026-03-04 02:50:29] total 379848
[2026-03-04 02:50:29] -rw-r--r--. 2 boinc boinc 221351936 Mar  3 20:23 ATLAS.root_0
[2026-03-04 02:50:29] -rw-r--r--. 2 boinc boinc     15845 Mar  3 20:23 start_atlas.sh
[2026-03-04 02:50:29] -rw-r--r--. 2 boinc boinc    597968 Mar  3 20:23 input.tar.gz
[2026-03-04 02:50:29] -rw-------. 1 boinc boinc 163229212 Mar  4 02:47 HITS.pool.root.1
[2026-03-04 02:50:29] -rw-------. 1 boinc boinc   3768320 Mar  4 02:50 result.tar.gz
02:50:31 (29699): run_atlas exited; CPU time 93317.725649
02:50:31 (29699): called boinc_finish(0)

</stderr_txt>
]]>

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