Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
11:13:38 (15571): wrapper (7.7.26015): starting
11:13:38 (15571): wrapper: running run_atlas (--nthreads 8)
[2026-03-03 11:13:38] Arguments: --nthreads 8
[2026-03-03 11:13:38] Threads: 8
[2026-03-03 11:13:38] Checking for CVMFS
[2026-03-03 11:13:38] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-03 11:13:39] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-03 11:13:39] Running cvmfs_config stat atlas.cern.ch
[2026-03-03 11:13:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-03 11:13:40] 2.11.2.0 18409 111599 136188 156841 3 9 14117360 25165824 899 130560 154 33519128 99.820 25619953 909 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-03-03 11:13:40] CVMFS is ok
[2026-03-03 11:13:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-03 11:13:40] Checking for apptainer binary...
[2026-03-03 11:13:40] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-03 11:13:40] Running /usr/bin/apptainer --version
[2026-03-03 11:13:41] apptainer version 1.3.2-1.el7
[2026-03-03 11:13:41] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-03 11:13:54] cg-vwn403.simple-grid.lan
[2026-03-03 11:13:54] apptainer works
[2026-03-03 11:13:54] Set ATHENA_PROC_NUMBER=8
[2026-03-03 11:13:54] Set ATHENA_CORE_NUMBER=8
[2026-03-03 11:13:54] Starting ATLAS job with PandaID=7036103644
[2026-03-03 11:13:54] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-03 16:19:36]  *** The last 200 lines of the pilot log: ***
[2026-03-03 16:19:36] 2026-03-03 15:18:46,100 | INFO     | log transfer has been attempted: DONE
[2026-03-03 16:19:36] 2026-03-03 15:18:46,101 | INFO     | job 7036103644 has finished - writing final server update
[2026-03-03 16:19:36] 2026-03-03 15:18:46,101 | INFO     | total number of processed events: 400 (read)
[2026-03-03 16:19:36] 2026-03-03 15:18:46,103 | INFO     | using path: /var/lib/boinc/slots/9/PanDA_Pilot-7036103644/memory_monitor_summary.json (trf name=prmon)
[2026-03-03 16:19:36] 2026-03-03 15:18:46,104 | INFO     | extracted standard info from prmon json
[2026-03-03 16:19:36] 2026-03-03 15:18:46,104 | INFO     | extracted standard memory fields from prmon json
[2026-03-03 16:19:36] 2026-03-03 15:18:46,104 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-03 16:19:36] 2026-03-03 15:18:46,105 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-03 16:19:36] 2026-03-03 15:18:46,105 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-03 16:19:36] 2026-03-03 15:18:46,111 | INFO     | fitting pss+swap vs Time
[2026-03-03 16:19:36] 2026-03-03 15:18:46,112 | INFO     | sum of square deviations: 7484568240.0
[2026-03-03 16:19:36] 2026-03-03 15:18:46,115 | INFO     | sum of deviations: 148665141913.99997
[2026-03-03 16:19:36] 2026-03-03 15:18:46,115 | INFO     | mean x: 1772542287.0
[2026-03-03 16:19:36] 2026-03-03 15:18:46,115 | INFO     | mean y: 2467884.301038062
[2026-03-03 16:19:36] 2026-03-03 15:18:46,116 | INFO     | intersect: -35205341330.01124
[2026-03-03 16:19:36] 2026-03-03 15:18:46,116 | INFO     | chi2: 8.83913081272115
[2026-03-03 16:19:36] 2026-03-03 15:18:46,117 | INFO     | sum of square deviations: 7102775035.0
[2026-03-03 16:19:36] 2026-03-03 15:18:46,120 | INFO     | sum of deviations: 165363940469.99994
[2026-03-03 16:19:36] 2026-03-03 15:18:46,120 | INFO     | mean x: 1772542134.5
[2026-03-03 16:19:36] 2026-03-03 15:18:46,120 | INFO     | mean y: 2474445.267605634
[2026-03-03 16:19:36] 2026-03-03 15:18:46,121 | INFO     | intersect: -41265135828.978485
[2026-03-03 16:19:36] 2026-03-03 15:18:46,121 | INFO     | chi2: 8.135776778016087
[2026-03-03 16:19:36] 2026-03-03 15:18:46,121 | INFO     | current chi2=8.135776778016087 (change=7.9572759992736595 %)
[2026-03-03 16:19:36] 2026-03-03 15:18:46,121 | INFO     | right removable region: 283
[2026-03-03 16:19:36] 2026-03-03 15:18:46,122 | INFO     | sum of square deviations: 7102775035.0
[2026-03-03 16:19:36] 2026-03-03 15:18:46,125 | INFO     | sum of deviations: 45807532150.0
[2026-03-03 16:19:36] 2026-03-03 15:18:46,125 | INFO     | mean x: 1772542439.5
[2026-03-03 16:19:36] 2026-03-03 15:18:46,125 | INFO     | mean y: 2508949.0
[2026-03-03 16:19:36] 2026-03-03 15:18:46,125 | INFO     | intersect: -11429050460.460543
[2026-03-03 16:19:36] 2026-03-03 15:18:46,126 | INFO     | chi2: 3.7726136381712108
[2026-03-03 16:19:36] 2026-03-03 15:18:46,126 | INFO     | current chi2=3.7726136381712108 (change=57.319178569665254 %)
[2026-03-03 16:19:36] 2026-03-03 15:18:46,127 | INFO     | sum of square deviations: 6734191380.0
[2026-03-03 16:19:36] 2026-03-03 15:18:46,130 | INFO     | sum of deviations: -31640450327.000008
[2026-03-03 16:19:36] 2026-03-03 15:18:46,130 | INFO     | mean x: 1772542592.0
[2026-03-03 16:19:36] 2026-03-03 15:18:46,130 | INFO     | mean y: 2540956.8924731184
[2026-03-03 16:19:36] 2026-03-03 15:18:46,130 | INFO     | intersect: 8330793403.241547
[2026-03-03 16:19:36] 2026-03-03 15:18:46,131 | INFO     | chi2: 1.0735502582499836
[2026-03-03 16:19:36] 2026-03-03 15:18:46,131 | INFO     | current chi2=1.0735502582499836 (change=71.54359387911265 %)
[2026-03-03 16:19:36] 2026-03-03 15:18:46,132 | INFO     | sum of square deviations: 6378584712.5
[2026-03-03 16:19:36] 2026-03-03 15:18:46,134 | INFO     | sum of deviations: -44109059404.50002
[2026-03-03 16:19:36] 2026-03-03 15:18:46,135 | INFO     | mean x: 1772542744.5
[2026-03-03 16:19:36] 2026-03-03 15:18:46,135 | INFO     | mean y: 2546272.930656934
[2026-03-03 16:19:36] 2026-03-03 15:18:46,135 | INFO     | intersect: 12259997845.369267
[2026-03-03 16:19:36] 2026-03-03 15:18:46,136 | INFO     | chi2: 0.9668889021809013
[2026-03-03 16:19:36] 2026-03-03 15:18:46,136 | INFO     | current chi2=0.9668889021809013 (change=9.935385441847242 %)
[2026-03-03 16:19:36] 2026-03-03 15:18:46,136 | INFO     | left removable region: 30
[2026-03-03 16:19:36] 2026-03-03 15:18:46,136 | INFO     | sum of square deviations: 5021496942.0
[2026-03-03 16:19:36] 2026-03-03 15:18:46,139 | INFO     | sum of deviations: -6119039930.000007
[2026-03-03 16:19:36] 2026-03-03 15:18:46,139 | INFO     | mean x: 1772543019.0
[2026-03-03 16:19:36] 2026-03-03 15:18:46,139 | INFO     | mean y: 2545436.0553359683
[2026-03-03 16:19:36] 2026-03-03 15:18:46,139 | INFO     | intersect: 2162511206.45842
[2026-03-03 16:19:36] 2026-03-03 15:18:46,140 | INFO     | chi2: 0.1098104844585062
[2026-03-03 16:19:36] 2026-03-03 15:18:46,140 | INFO     | current memory leak: -1.22 B/s (using 253 data points, chi2=0.11)
[2026-03-03 16:19:36] 2026-03-03 15:18:46,141 | INFO     | could have reported an average CPU frequency of 1999 MHz (13 samples)
[2026-03-03 16:19:36] 2026-03-03 15:18:46,141 | INFO     | ..............................
[2026-03-03 16:19:36] 2026-03-03 15:18:46,141 | INFO     | . Timing measurements:
[2026-03-03 16:19:36] 2026-03-03 15:18:46,141 | INFO     | . get job = 0 s
[2026-03-03 16:19:36] 2026-03-03 15:18:46,141 | INFO     | . initial setup = 118 s
[2026-03-03 16:19:36] 2026-03-03 15:18:46,142 | INFO     | . payload setup = 151 s
[2026-03-03 16:19:36] 2026-03-03 15:18:46,142 | INFO     | . stage-in = 0 s
[2026-03-03 16:19:36] 2026-03-03 15:18:46,142 | INFO     | . payload execution = 17751 s
[2026-03-03 16:19:36] 2026-03-03 15:18:46,142 | INFO     | . stage-out = 5 s
[2026-03-03 16:19:36] 2026-03-03 15:18:46,142 | INFO     | . log creation = 1 s
[2026-03-03 16:19:36] 2026-03-03 15:18:46,142 | INFO     | ..............................
[2026-03-03 16:19:36] 2026-03-03 15:18:46,306 | INFO     | 
[2026-03-03 16:19:36] 2026-03-03 15:18:46,306 | INFO     | job summary report
[2026-03-03 16:19:36] 2026-03-03 15:18:46,306 | INFO     | --------------------------------------------------
[2026-03-03 16:19:36] 2026-03-03 15:18:46,306 | INFO     | PanDA job id: 7036103644
[2026-03-03 16:19:36] 2026-03-03 15:18:46,306 | INFO     | task id: 48838447
[2026-03-03 16:19:36] 2026-03-03 15:18:46,306 | INFO     | errors: (none)
[2026-03-03 16:19:36] 2026-03-03 15:18:46,307 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-03 16:19:36] 2026-03-03 15:18:46,307 | INFO     | pilot state: finished 
[2026-03-03 16:19:36] 2026-03-03 15:18:46,307 | INFO     | transexitcode: 0
[2026-03-03 16:19:36] 2026-03-03 15:18:46,307 | INFO     | exeerrorcode: 0
[2026-03-03 16:19:36] 2026-03-03 15:18:46,307 | INFO     | exeerrordiag: 
[2026-03-03 16:19:36] 2026-03-03 15:18:46,307 | INFO     | exitcode: 0
[2026-03-03 16:19:36] 2026-03-03 15:18:46,307 | INFO     | exitmsg: OK
[2026-03-03 16:19:36] 2026-03-03 15:18:46,307 | INFO     | cpuconsumptiontime: 66881 s
[2026-03-03 16:19:36] 2026-03-03 15:18:46,308 | INFO     | nevents: 400
[2026-03-03 16:19:36] 2026-03-03 15:18:46,308 | INFO     | neventsw: 0
[2026-03-03 16:19:36] 2026-03-03 15:18:46,308 | INFO     | pid: 24055
[2026-03-03 16:19:36] 2026-03-03 15:18:46,308 | INFO     | pgrp: 24055
[2026-03-03 16:19:36] 2026-03-03 15:18:46,308 | INFO     | corecount: 8
[2026-03-03 16:19:36] 2026-03-03 15:18:46,308 | INFO     | event service: False
[2026-03-03 16:19:36] 2026-03-03 15:18:46,308 | INFO     | sizes: {0: 2285993, 1: 2286678, 2: 2287139, 3: 2287139, 13: 2287167, 17907: 2319401, 17908: 2319528, 17914: 2328582, 17917: 2328638, 17918: 2328832}
[2026-03-03 16:19:36] 2026-03-03 15:18:46,308 | INFO     | --------------------------------------------------
[2026-03-03 16:19:36] 2026-03-03 15:18:46,308 | INFO     | 
[2026-03-03 16:19:36] 2026-03-03 15:18:46,309 | INFO     | executing command: ls -lF /var/lib/boinc/slots/9
[2026-03-03 16:19:36] 2026-03-03 15:18:46,819 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-03 16:19:36] 2026-03-03 15:18:46,820 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-03 16:19:36] 2026-03-03 15:18:46,820 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-03 16:19:36] 2026-03-03 15:18:46,820 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-03 16:19:36] 2026-03-03 15:18:46,820 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-03 16:19:36] 2026-03-03 15:18:46,820 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-03 16:19:36] 2026-03-03 15:18:46,820 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-03 16:19:36] 2026-03-03 15:18:46,820 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-03 16:19:36] 2026-03-03 15:18:46,820 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-03 16:19:36] 2026-03-03 15:18:46,820 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-03 16:19:36] 2026-03-03 15:18:46,820 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-03 16:19:36] 2026-03-03 15:18:46,821 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-03 16:19:36] 2026-03-03 15:18:46,821 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-03 16:19:36] 2026-03-03 15:18:46,821 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-03 16:19:36] 2026-03-03 15:18:46,821 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-03 16:19:36] 2026-03-03 15:18:46,821 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-03 16:19:36] 2026-03-03 15:18:46,821 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-03 16:19:36] 2026-03-03 15:18:46,821 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-03 16:19:36] 2026-03-03 15:18:46,821 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-03 16:19:36] 2026-03-03 15:18:46,822 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-03 16:19:36] 2026-03-03 15:18:46,822 | INFO     | job 7036103644 has completed (purged errors)
[2026-03-03 16:19:36] 2026-03-03 15:18:46,822 | INFO     | overall cleanup function is called
[2026-03-03 16:19:36] 2026-03-03 15:18:47,831 | INFO     | --- collectZombieJob: --- 10, [24055]
[2026-03-03 16:19:36] 2026-03-03 15:18:47,831 | INFO     | zombie collector waiting for pid 24055
[2026-03-03 16:19:36] 2026-03-03 15:18:47,831 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-03 16:19:36] 2026-03-03 15:18:47,831 | INFO     | collected zombie processes
[2026-03-03 16:19:36] 2026-03-03 15:18:47,831 | INFO     | will attempt to kill all subprocesses of pid=24055
[2026-03-03 16:19:36] 2026-03-03 15:18:47,908 | INFO     | process IDs to be killed: [24055] (in reverse order)
[2026-03-03 16:19:36] 2026-03-03 15:18:49,055 | WARNING  | found no corresponding commands to process id(s)
[2026-03-03 16:19:36] 2026-03-03 15:18:49,055 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-03 16:19:36] 2026-03-03 15:18:49,057 | INFO     | did not find any defunct processes belonging to 24055
[2026-03-03 16:19:36] 2026-03-03 15:18:49,059 | INFO     | did not find any defunct processes belonging to 24055
[2026-03-03 16:19:36] 2026-03-03 15:18:49,059 | INFO     | ready for new job
[2026-03-03 16:19:36] 2026-03-03 15:18:49,059 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-03 16:19:36] 2026-03-03 15:18:49,061 | INFO     | **************************************
[2026-03-03 16:19:36] 2026-03-03 15:18:49,062 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-03 16:19:36] 2026-03-03 15:18:49,062 | INFO     | **************************************
[2026-03-03 16:19:36] 2026-03-03 15:18:49,062 | INFO     | 
[2026-03-03 16:19:36] 2026-03-03 15:18:49,063 | INFO     | pilot is running in a VM
[2026-03-03 16:19:36] 2026-03-03 15:18:49,063 | INFO     | architecture information:
[2026-03-03 16:19:36] 2026-03-03 15:18:49,074 | INFO     | executing command: cat /etc/os-release
[2026-03-03 16:19:36] 2026-03-03 15:18:49,441 | INFO     | cat /etc/os-release:
[2026-03-03 16:19:36] NAME="CentOS Linux"
[2026-03-03 16:19:36] VERSION="7 (Core)"
[2026-03-03 16:19:36] ID="centos"
[2026-03-03 16:19:36] ID_LIKE="rhel fedora"
[2026-03-03 16:19:36] VERSION_ID="7"
[2026-03-03 16:19:36] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-03 16:19:36] ANSI_COLOR="0;31"
[2026-03-03 16:19:36] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-03 16:19:36] HOME_URL="https://www.centos.org/"
[2026-03-03 16:19:36] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-03 16:19:36] 
[2026-03-03 16:19:36] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-03 16:19:36] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-03 16:19:36] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-03 16:19:36] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-03 16:19:36] 
[2026-03-03 16:19:36] 2026-03-03 15:18:49,442 | INFO     | **************************************
[2026-03-03 16:19:36] 2026-03-03 15:18:49,945 | INFO     | executing command: df -mP /var/lib/boinc/slots/9
[2026-03-03 16:19:36] 2026-03-03 15:18:50,099 | INFO     | sufficient remaining disk space (496320380928 B)
[2026-03-03 16:19:36] 2026-03-03 15:18:50,100 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-03 16:19:36] 2026-03-03 15:18:50,100 | INFO     | current server update state: UPDATING_FINAL
[2026-03-03 16:19:36] 2026-03-03 15:18:50,100 | INFO     | update_server=False
[2026-03-03 16:19:36] 2026-03-03 15:18:50,100 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-03 16:19:36] 2026-03-03 15:18:50,101 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-03 16:19:36] 2026-03-03 15:18:50,106 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-03 16:19:36] 2026-03-03 15:18:50,106 | INFO     | aborting loop
[2026-03-03 16:19:36] 2026-03-03 15:18:50,644 | INFO     | all job control threads have been joined
[2026-03-03 16:19:36] 2026-03-03 15:18:50,678 | INFO     | all payload control threads have been joined
[2026-03-03 16:19:36] 2026-03-03 15:18:50,736 | INFO     | all data control threads have been joined
[2026-03-03 16:19:36] 2026-03-03 15:18:51,106 | INFO     | [job] retrieve thread has finished
[2026-03-03 16:19:36] 2026-03-03 15:18:51,112 | INFO     | [job] job monitor thread has finished
[2026-03-03 16:19:36] 2026-03-03 15:18:51,287 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-03 16:19:36] 2026-03-03 15:18:51,298 | INFO     | [payload] validate_post thread has finished
[2026-03-03 16:19:36] 2026-03-03 15:18:51,314 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-03 16:19:36] 2026-03-03 15:18:51,610 | INFO     | [data] copytool_in thread has finished
[2026-03-03 16:19:36] 2026-03-03 15:18:51,650 | INFO     | [job] control thread has finished
[2026-03-03 16:19:36] 2026-03-03 15:18:51,684 | INFO     | [payload] control thread has finished
[2026-03-03 16:19:36] 2026-03-03 15:18:51,729 | INFO     | [payload] execute_payloads thread has finished
[2026-03-03 16:19:36] 2026-03-03 15:18:51,731 | INFO     | [job] validate thread has finished
[2026-03-03 16:19:36] 2026-03-03 15:18:51,742 | INFO     | [data] control thread has finished
[2026-03-03 16:19:36] 2026-03-03 15:18:51,817 | INFO     | [job] create_data_payload thread has finished
[2026-03-03 16:19:36] 2026-03-03 15:18:51,937 | INFO     | [payload] validate_pre thread has finished
[2026-03-03 16:19:36] 2026-03-03 15:18:52,108 | INFO     | [data] copytool_out thread has finished
[2026-03-03 16:19:36] 2026-03-03 15:18:52,210 | INFO     | [payload] failed_post thread has finished
[2026-03-03 16:19:36] 2026-03-03 15:18:52,280 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-03 16:19:36] 2026-03-03 15:18:52,320 | INFO     | [job] queue monitor thread has finished
[2026-03-03 16:19:36] 2026-03-03 15:18:55,296 | INFO     | [data] queue_monitor thread has finished
[2026-03-03 16:19:36] 2026-03-03 15:19:18,056 | INFO     | PID=19611 has CPU usage=2.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-03-03 16:19:36] 2026-03-03 15:19:18,057 | INFO     | .. there are 2 such processes running
[2026-03-03 16:19:36] 2026-03-03 15:19:18,058 | INFO     | found 0 job(s) in 20 queues
[2026-03-03 16:19:36] 2026-03-03 15:19:18,058 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-03 16:19:36] 2026-03-03 15:19:18,058 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-03 16:19:36] 2026-03-03 15:19:25,504 | INFO     | [monitor] cgroup control has ended
[2026-03-03 16:19:36] 2026-03-03 15:19:25,956 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139761376581440)>', '<ExcThread(monitor, started 139761079527168)>']
[2026-03-03 16:19:36] 2026-03-03 15:19:26,208 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-03 16:19:36] 2026-03-03 15:19:26,208 | INFO     | [monitor] control thread has ended
[2026-03-03 16:19:36] 2026-03-03 15:19:30,982 | INFO     | all workflow threads have been joined
[2026-03-03 16:19:36] 2026-03-03 15:19:30,982 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-03 16:19:36] 2026-03-03 15:19:30,982 | INFO     | traces error code: 0
[2026-03-03 16:19:36] 2026-03-03 15:19:30,982 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-03 16:19:36] 2026-03-03 15:19:31,440 [wrapper] ==== pilot stdout END ====
[2026-03-03 16:19:36] 2026-03-03 15:19:31,498 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-03 16:19:36] 2026-03-03 15:19:31,609 [wrapper] pilotpid: 19611
[2026-03-03 16:19:36] 2026-03-03 15:19:31,665 [wrapper] Pilot exit status: 0
[2026-03-03 16:19:36] 2026-03-03 15:19:32,137 [wrapper] pandaids: 7036103644
[2026-03-03 16:19:36] 2026-03-03 15:19:32,933 [wrapper] cleanup supervisor_pilot 30535 19612
[2026-03-03 16:19:36] 2026-03-03 15:19:32,963 [wrapper] Test setup, not cleaning
[2026-03-03 16:19:36] 2026-03-03 15:19:33,085 [wrapper] apfmon messages muted
[2026-03-03 16:19:36] 2026-03-03 15:19:33,196 [wrapper] ==== wrapper stdout END ====
[2026-03-03 16:19:36] 2026-03-03 15:19:33,313 [wrapper] ==== wrapper stderr END ====
[2026-03-03 16:19:36]  *** Error codes and diagnostics ***
[2026-03-03 16:19:36]     "exeErrorCode": 0,
[2026-03-03 16:19:36]     "exeErrorDiag": "",
[2026-03-03 16:19:36]     "pilotErrorCode": 0,
[2026-03-03 16:19:36]     "pilotErrorDiag": "",
[2026-03-03 16:19:36]  *** Listing of results directory ***
[2026-03-03 16:19:36] total 496116
[2026-03-03 16:19:36] -rw-r--r--. 1 boinc boinc    584627 Mar  2 20:44 pilot3.tar.gz
[2026-03-03 16:19:36] -rw-r--r--. 1 boinc boinc      5111 Mar  2 20:46 queuedata.json
[2026-03-03 16:19:36] -rwx------. 1 boinc boinc     36322 Mar  2 20:46 runpilot2-wrapper.sh
[2026-03-03 16:19:36] -rw-r--r--. 1 boinc boinc       100 Mar  3 11:13 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-03 16:19:36] -rwxr-xr-x. 1 boinc boinc      7986 Mar  3 11:13 run_atlas
[2026-03-03 16:19:36] -rw-r--r--. 1 boinc boinc       105 Mar  3 11:13 job.xml
[2026-03-03 16:19:36] -rw-r--r--. 2 boinc boinc 281993011 Mar  3 11:13 EVNT.48220117._000141.pool.root.1
[2026-03-03 16:19:36] -rw-r--r--. 2 boinc boinc     15845 Mar  3 11:13 start_atlas.sh
[2026-03-03 16:19:36] drwxrwx--x. 2 boinc boinc        68 Mar  3 11:13 shared
[2026-03-03 16:19:36] -rw-r--r--. 2 boinc boinc    597958 Mar  3 11:13 input.tar.gz
[2026-03-03 16:19:36] -rw-r--r--. 1 boinc boinc      6391 Mar  3 11:13 init_data.xml
[2026-03-03 16:19:36] -rw-r--r--. 1 boinc boinc         0 Mar  3 11:13 boinc_lockfile
[2026-03-03 16:19:36] -rw-r--r--. 1 boinc boinc      2572 Mar  3 11:13 pandaJob.out
[2026-03-03 16:19:36] -rw-------. 1 boinc boinc       415 Mar  3 11:19 workernode_map.json
[2026-03-03 16:19:36] -rw-------. 1 boinc boinc    998420 Mar  3 11:19 agis_schedconf.cvmfs.json
[2026-03-03 16:19:36] drwx------. 5 boinc boinc      4096 Mar  3 11:19 pilot3
[2026-03-03 16:19:36] -rw-------. 1 boinc boinc 216064030 Mar  3 16:17 HITS.48838447._003410.pool.root.1
[2026-03-03 16:19:36] -rw-r--r--. 1 boinc boinc       531 Mar  3 16:17 boinc_task_state.xml
[2026-03-03 16:19:36] -rw-------. 1 boinc boinc      1013 Mar  3 16:18 memory_monitor_summary.json
[2026-03-03 16:19:36] -rw-------. 1 boinc boinc   1516104 Mar  3 16:18 agis_ddmendpoints.agis.ALL.json
[2026-03-03 16:19:36] -rw-------. 1 boinc boinc    516491 Mar  3 16:18 log.48838447._003410.job.log.tgz.1
[2026-03-03 16:19:36] -rw-------. 1 boinc boinc      6314 Mar  3 16:18 heartbeat.json
[2026-03-03 16:19:36] -rw-------. 1 boinc boinc        95 Mar  3 16:19 pilot_heartbeat.json
[2026-03-03 16:19:36] -rw-r--r--. 1 boinc boinc      8192 Mar  3 16:19 boinc_mmap_file
[2026-03-03 16:19:36] -rw-r--r--. 1 boinc boinc        28 Mar  3 16:19 wrapper_checkpoint.txt
[2026-03-03 16:19:36] -rw-------. 1 boinc boinc      4880 Mar  3 16:19 pilotlog.txt
[2026-03-03 16:19:36] -rw-------. 1 boinc boinc   2505009 Mar  3 16:19 log.48838447._003410.job.log.1
[2026-03-03 16:19:36] -rw-------. 1 boinc boinc       357 Mar  3 16:19 output.list
[2026-03-03 16:19:36] -rw-r--r--. 1 boinc boinc       620 Mar  3 16:19 runtime_log
[2026-03-03 16:19:36] -rw-------. 1 boinc boinc   3041280 Mar  3 16:19 result.tar.gz
[2026-03-03 16:19:36] -rw-r--r--. 1 boinc boinc      8816 Mar  3 16:19 runtime_log.err
[2026-03-03 16:19:36] -rw-------. 1 boinc boinc       656 Mar  3 16:19 nCbNDmGPOH9n9Rq4apOajLDm4fhM0noT9bVooX4SDmkXCLDmCi1lGm.diag
[2026-03-03 16:19:36] -rw-r--r--. 1 boinc boinc     20731 Mar  3 16:19 stderr.txt
[2026-03-03 16:19:36] HITS file was successfully produced:
[2026-03-03 16:19:36] -rw-------. 1 boinc boinc 216064030 Mar  3 16:17 shared/HITS.pool.root.1
[2026-03-03 16:19:36]  *** Contents of shared directory: ***
[2026-03-03 16:19:36] total 489960
[2026-03-03 16:19:36] -rw-r--r--. 2 boinc boinc 281993011 Mar  3 11:13 ATLAS.root_0
[2026-03-03 16:19:36] -rw-r--r--. 2 boinc boinc     15845 Mar  3 11:13 start_atlas.sh
[2026-03-03 16:19:36] -rw-r--r--. 2 boinc boinc    597958 Mar  3 11:13 input.tar.gz
[2026-03-03 16:19:36] -rw-------. 1 boinc boinc 216064030 Mar  3 16:17 HITS.pool.root.1
[2026-03-03 16:19:36] -rw-------. 1 boinc boinc   3041280 Mar  3 16:19 result.tar.gz
16:19:37 (15571): run_atlas exited; CPU time 67067.586167
16:19:37 (15571): called boinc_finish(0)

</stderr_txt>
]]>

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