Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
08:53:30 (3242534): wrapper (7.7.26015): starting
08:53:30 (3242534): wrapper: running run_atlas (--nthreads 4)
[2026-03-03 08:53:30] Arguments: --nthreads 4
[2026-03-03 08:53:30] Threads: 4
[2026-03-03 08:53:30] Checking for CVMFS
[2026-03-03 08:53:30] No cvmfs_config command found, will try listing directly
[2026-03-03 08:53:30] CVMFS is ok
[2026-03-03 08:53:30] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-03 08:53:30] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-03 08:53:30] Further information can be found at the LHC@home message board.
[2026-03-03 08:53:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-03 08:53:30] Checking for apptainer binary...
[2026-03-03 08:53:30] which: no apptainer in ((null))
[2026-03-03 08:53:30] apptainer is not installed, using version from CVMFS
[2026-03-03 08:53:30] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-03 08:53:30] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot120/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut28.grid.cesnet.cz
[2026-03-03 08:53:30] apptainer works
[2026-03-03 08:53:30] Set ATHENA_PROC_NUMBER=4
[2026-03-03 08:53:30] Set ATHENA_CORE_NUMBER=4
[2026-03-03 08:53:30] Starting ATLAS job with PandaID=7036103795
[2026-03-03 08:53:30] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot120/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-03 10:42:33]  *** The last 200 lines of the pilot log: ***
[2026-03-03 10:42:33] 2026-03-03 09:35:03,996 | INFO     | mean x: 1772527467.5
[2026-03-03 10:42:33] 2026-03-03 09:35:03,996 | INFO     | mean y: 2299463.57
[2026-03-03 10:42:33] 2026-03-03 09:35:03,996 | INFO     | intersect: -22659759886.849575
[2026-03-03 10:42:33] 2026-03-03 09:35:03,996 | INFO     | chi2: 1.9265889399514633
[2026-03-03 10:42:33] 2026-03-03 09:35:03,996 | INFO     | sum of square deviations: 265828240.0
[2026-03-03 10:42:33] 2026-03-03 09:35:03,996 | INFO     | sum of deviations: 9801352326.999998
[2026-03-03 10:42:33] 2026-03-03 09:35:03,996 | INFO     | mean x: 1772527315.0
[2026-03-03 10:42:33] 2026-03-03 09:35:03,996 | INFO     | mean y: 2318712.6842105263
[2026-03-03 10:42:33] 2026-03-03 09:35:03,996 | INFO     | intersect: -65352531184.17516
[2026-03-03 10:42:33] 2026-03-03 09:35:03,996 | INFO     | chi2: 1.1191535231349132
[2026-03-03 10:42:33] 2026-03-03 09:35:03,996 | INFO     | current chi2=1.1191535231349132 (change=41.91010339947721 %)
[2026-03-03 10:42:33] 2026-03-03 09:35:03,997 | INFO     | sum of square deviations: 226022842.5
[2026-03-03 10:42:33] 2026-03-03 09:35:03,997 | INFO     | sum of deviations: 9206313888.5
[2026-03-03 10:42:33] 2026-03-03 09:35:03,997 | INFO     | mean x: 1772527162.5
[2026-03-03 10:42:33] 2026-03-03 09:35:03,997 | INFO     | mean y: 2316430.922222222
[2026-03-03 10:42:33] 2026-03-03 09:35:03,997 | INFO     | intersect: -72195879350.4057
[2026-03-03 10:42:33] 2026-03-03 09:35:03,997 | INFO     | chi2: 1.1214081520875525
[2026-03-03 10:42:33] 2026-03-03 09:35:03,997 | INFO     | current chi2=1.1214081520875525 (change=-0.20145841531407907 %)
[2026-03-03 10:42:33] 2026-03-03 09:35:03,997 | INFO     | right removable region: 89
[2026-03-03 10:42:33] 2026-03-03 09:35:03,997 | INFO     | sum of square deviations: 265828240.0
[2026-03-03 10:42:33] 2026-03-03 09:35:03,997 | INFO     | sum of deviations: -5474064848.0
[2026-03-03 10:42:33] 2026-03-03 09:35:03,997 | INFO     | mean x: 1772527620.0
[2026-03-03 10:42:33] 2026-03-03 09:35:03,997 | INFO     | mean y: 2330939.2736842106
[2026-03-03 10:42:33] 2026-03-03 09:35:03,997 | INFO     | intersect: 36503084722.05876
[2026-03-03 10:42:33] 2026-03-03 09:35:03,997 | INFO     | chi2: 0.8426860023143914
[2026-03-03 10:42:33] 2026-03-03 09:35:03,998 | INFO     | current chi2=0.8426860023143914 (change=56.260207621890466 %)
[2026-03-03 10:42:33] 2026-03-03 09:35:03,998 | INFO     | sum of square deviations: 226022842.5
[2026-03-03 10:42:33] 2026-03-03 09:35:03,998 | INFO     | sum of deviations: -5425054855.5
[2026-03-03 10:42:33] 2026-03-03 09:35:03,998 | INFO     | mean x: 1772527772.5
[2026-03-03 10:42:33] 2026-03-03 09:35:03,998 | INFO     | mean y: 2330743.7444444443
[2026-03-03 10:42:33] 2026-03-03 09:35:03,998 | INFO     | intersect: 42546970446.29896
[2026-03-03 10:42:33] 2026-03-03 09:35:03,998 | INFO     | chi2: 0.8438925061457333
[2026-03-03 10:42:33] 2026-03-03 09:35:03,998 | INFO     | current chi2=0.8438925061457333 (change=-0.14317359348895228 %)
[2026-03-03 10:42:33] 2026-03-03 09:35:03,998 | INFO     | left removable region: 20
[2026-03-03 10:42:33] 2026-03-03 09:35:03,998 | INFO     | sum of square deviations: 101843770.0
[2026-03-03 10:42:33] 2026-03-03 09:35:03,998 | INFO     | sum of deviations: 361553099.99999964
[2026-03-03 10:42:33] 2026-03-03 09:35:03,998 | INFO     | mean x: 1772527742.0
[2026-03-03 10:42:33] 2026-03-03 09:35:03,998 | INFO     | mean y: 2352602.188405797
[2026-03-03 10:42:33] 2026-03-03 09:35:03,998 | INFO     | intersect: -6290255182.815032
[2026-03-03 10:42:33] 2026-03-03 09:35:03,998 | INFO     | chi2: 0.00010400303701658191
[2026-03-03 10:42:33] 2026-03-03 09:35:03,999 | INFO     | current memory leak: 3.55 B/s (using 69 data points, chi2=0.00)
[2026-03-03 10:42:33] 2026-03-03 09:35:03,999 | INFO     | could have reported an average CPU frequency of 3567 MHz (7 samples)
[2026-03-03 10:42:33] 2026-03-03 09:35:03,999 | INFO     | ..............................
[2026-03-03 10:42:33] 2026-03-03 09:35:03,999 | INFO     | . Timing measurements:
[2026-03-03 10:42:33] 2026-03-03 09:35:03,999 | INFO     | . get job = 0 s
[2026-03-03 10:42:33] 2026-03-03 09:35:03,999 | INFO     | . initial setup = 5 s
[2026-03-03 10:42:33] 2026-03-03 09:35:03,999 | INFO     | . payload setup = 6 s
[2026-03-03 10:42:33] 2026-03-03 09:35:03,999 | INFO     | . stage-in = 0 s
[2026-03-03 10:42:33] 2026-03-03 09:35:03,999 | INFO     | . payload execution = 6055 s
[2026-03-03 10:42:33] 2026-03-03 09:35:03,999 | INFO     | . stage-out = 0 s
[2026-03-03 10:42:33] 2026-03-03 09:35:03,999 | INFO     | . log creation = 0 s
[2026-03-03 10:42:33] 2026-03-03 09:35:03,999 | INFO     | ..............................
[2026-03-03 10:42:33] 2026-03-03 09:35:04,050 | INFO     | 
[2026-03-03 10:42:33] 2026-03-03 09:35:04,050 | INFO     | job summary report
[2026-03-03 10:42:33] 2026-03-03 09:35:04,050 | INFO     | --------------------------------------------------
[2026-03-03 10:42:33] 2026-03-03 09:35:04,050 | INFO     | PanDA job id: 7036103795
[2026-03-03 10:42:33] 2026-03-03 09:35:04,050 | INFO     | task id: 48838447
[2026-03-03 10:42:33] 2026-03-03 09:35:04,050 | INFO     | errors: (none)
[2026-03-03 10:42:33] 2026-03-03 09:35:04,050 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-03 10:42:33] 2026-03-03 09:35:04,050 | INFO     | pilot state: finished 
[2026-03-03 10:42:33] 2026-03-03 09:35:04,050 | INFO     | transexitcode: 0
[2026-03-03 10:42:33] 2026-03-03 09:35:04,050 | INFO     | exeerrorcode: 0
[2026-03-03 10:42:33] 2026-03-03 09:35:04,050 | INFO     | exeerrordiag: 
[2026-03-03 10:42:33] 2026-03-03 09:35:04,051 | INFO     | exitcode: 0
[2026-03-03 10:42:33] 2026-03-03 09:35:04,051 | INFO     | exitmsg: OK
[2026-03-03 10:42:33] 2026-03-03 09:35:04,051 | INFO     | cpuconsumptiontime: 23304 s
[2026-03-03 10:42:33] 2026-03-03 09:35:04,051 | INFO     | nevents: 400
[2026-03-03 10:42:33] 2026-03-03 09:35:04,051 | INFO     | neventsw: 0
[2026-03-03 10:42:33] 2026-03-03 09:35:04,051 | INFO     | pid: 3272862
[2026-03-03 10:42:33] 2026-03-03 09:35:04,051 | INFO     | pgrp: 3272862
[2026-03-03 10:42:33] 2026-03-03 09:35:04,051 | INFO     | corecount: 4
[2026-03-03 10:42:33] 2026-03-03 09:35:04,051 | INFO     | event service: False
[2026-03-03 10:42:33] 2026-03-03 09:35:04,051 | INFO     | sizes: {0: 2282296, 11: 2282296, 6065: 2309110, 6067: 2318188, 6068: 2318326}
[2026-03-03 10:42:33] 2026-03-03 09:35:04,051 | INFO     | --------------------------------------------------
[2026-03-03 10:42:33] 2026-03-03 09:35:04,051 | INFO     | 
[2026-03-03 10:42:33] 2026-03-03 09:35:04,051 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot120/slots/0
[2026-03-03 10:42:33] 2026-03-03 09:35:04,072 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-03 10:42:33] 2026-03-03 09:35:04,072 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-03 10:42:33] 2026-03-03 09:35:04,072 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-03 10:42:33] 2026-03-03 09:35:04,072 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-03 10:42:33] 2026-03-03 09:35:04,072 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-03 10:42:33] 2026-03-03 09:35:04,072 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-03 10:42:33] 2026-03-03 09:35:04,072 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-03 10:42:33] 2026-03-03 09:35:04,072 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-03 10:42:33] 2026-03-03 09:35:04,072 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-03 10:42:33] 2026-03-03 09:35:04,072 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-03 10:42:33] 2026-03-03 09:35:04,072 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-03 10:42:33] 2026-03-03 09:35:04,072 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-03 10:42:33] 2026-03-03 09:35:04,072 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-03 10:42:33] 2026-03-03 09:35:04,072 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-03 10:42:33] 2026-03-03 09:35:04,072 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-03 10:42:33] 2026-03-03 09:35:04,072 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-03 10:42:33] 2026-03-03 09:35:04,073 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-03 10:42:33] 2026-03-03 09:35:04,073 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-03 10:42:33] 2026-03-03 09:35:04,073 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-03 10:42:33] 2026-03-03 09:35:04,073 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-03 10:42:33] 2026-03-03 09:35:04,073 | INFO     | job 7036103795 has completed (purged errors)
[2026-03-03 10:42:33] 2026-03-03 09:35:04,073 | INFO     | overall cleanup function is called
[2026-03-03 10:42:33] 2026-03-03 09:35:05,080 | INFO     | --- collectZombieJob: --- 10, [3272862]
[2026-03-03 10:42:33] 2026-03-03 09:35:05,080 | INFO     | zombie collector waiting for pid 3272862
[2026-03-03 10:42:33] 2026-03-03 09:35:05,080 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-03 10:42:33] 2026-03-03 09:35:05,080 | INFO     | collected zombie processes
[2026-03-03 10:42:33] 2026-03-03 09:35:05,081 | INFO     | will attempt to kill all subprocesses of pid=3272862
[2026-03-03 10:42:33] 2026-03-03 09:35:05,604 | WARNING  | process 3272862 can no longer be monitored (due to stat problems) - aborting
[2026-03-03 10:42:33] 2026-03-03 09:35:06,386 | INFO     | process IDs to be killed: [3272862] (in reverse order)
[2026-03-03 10:42:33] 2026-03-03 09:35:06,417 | INFO     | using path: /var/lib/boinc/var/slot120/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-03 10:42:33] 2026-03-03 09:35:06,418 | INFO     | using path: /var/lib/boinc/var/slot120/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-03 10:42:33] 2026-03-03 09:35:06,419 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-03-03 10:42:33] 2026-03-03 09:35:06,419 | WARNING  | maxPSS not found in memory monitor output
[2026-03-03 10:42:33] 2026-03-03 09:35:06,419 | INFO     | skipping file size check of payload stdout file (/var/lib/boinc/var/slot120/slots/0/PanDA_Pilot-7036103795/payload.stdout) since it has not been created yet
[2026-03-03 10:42:33] 2026-03-03 09:35:06,419 | INFO     | executing command: df -mP /var/lib/boinc/var/slot120/slots/0
[2026-03-03 10:42:33] 2026-03-03 09:35:06,438 | INFO     | sufficient remaining disk space (229942231040 B)
[2026-03-03 10:42:33] 2026-03-03 09:35:06,438 | WARNING  | skipping size check of workdir since it has not been created yet
[2026-03-03 10:42:33] 2026-03-03 09:35:06,438 | INFO     | output file size check: skipping output file /var/lib/boinc/var/slot120/slots/0/PanDA_Pilot-7036103795/HITS.48838447._003561.pool.root.1 since it does not exist
[2026-03-03 10:42:33] 2026-03-03 09:35:06,689 | WARNING  | found no corresponding commands to process id(s)
[2026-03-03 10:42:33] 2026-03-03 09:35:06,690 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-03 10:42:33] 2026-03-03 09:35:06,785 | INFO     | did not find any defunct processes belonging to 3272862
[2026-03-03 10:42:33] 2026-03-03 09:35:06,851 | INFO     | did not find any defunct processes belonging to 3272862
[2026-03-03 10:42:33] 2026-03-03 09:35:06,851 | INFO     | ready for new job
[2026-03-03 10:42:33] 2026-03-03 09:35:06,852 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-03 10:42:33] 2026-03-03 09:35:06,853 | INFO     | **************************************
[2026-03-03 10:42:33] 2026-03-03 09:35:06,853 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-03 10:42:33] 2026-03-03 09:35:06,853 | INFO     | **************************************
[2026-03-03 10:42:33] 2026-03-03 09:35:06,853 | INFO     | 
[2026-03-03 10:42:33] 2026-03-03 09:35:06,863 | INFO     | architecture information:
[2026-03-03 10:42:33] 2026-03-03 09:35:06,865 | INFO     | executing command: cat /etc/os-release
[2026-03-03 10:42:33] 2026-03-03 09:35:06,882 | INFO     | cat /etc/os-release:
[2026-03-03 10:42:33] NAME="CentOS Linux"
[2026-03-03 10:42:33] VERSION="7 (Core)"
[2026-03-03 10:42:33] ID="centos"
[2026-03-03 10:42:33] ID_LIKE="rhel fedora"
[2026-03-03 10:42:33] VERSION_ID="7"
[2026-03-03 10:42:33] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-03 10:42:33] ANSI_COLOR="0;31"
[2026-03-03 10:42:33] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-03 10:42:33] HOME_URL="https://www.centos.org/"
[2026-03-03 10:42:33] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-03 10:42:33] 
[2026-03-03 10:42:33] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-03 10:42:33] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-03 10:42:33] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-03 10:42:33] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-03 10:42:33] 
[2026-03-03 10:42:33] 2026-03-03 09:35:06,882 | INFO     | **************************************
[2026-03-03 10:42:33] 2026-03-03 09:35:07,044 | INFO     | number of running child processes to parent process 3272862: 1
[2026-03-03 10:42:33] 2026-03-03 09:35:07,044 | INFO     | maximum number of monitored processes: 6
[2026-03-03 10:42:33] 2026-03-03 09:35:07,044 | INFO     | aborting job monitoring since job object (job id=7036103795) has expired
[2026-03-03 10:42:33] 2026-03-03 09:35:07,385 | INFO     | executing command: df -mP /var/lib/boinc/var/slot120/slots/0
[2026-03-03 10:42:33] 2026-03-03 09:35:07,400 | INFO     | sufficient remaining disk space (229942231040 B)
[2026-03-03 10:42:33] 2026-03-03 09:35:07,400 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-03 10:42:33] 2026-03-03 09:35:07,400 | INFO     | current server update state: UPDATING_FINAL
[2026-03-03 10:42:33] 2026-03-03 09:35:07,401 | INFO     | update_server=False
[2026-03-03 10:42:33] 2026-03-03 09:35:07,401 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-03 10:42:33] 2026-03-03 09:35:07,401 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-03 10:42:33] 2026-03-03 09:35:07,401 | INFO     | will abort loop
[2026-03-03 10:42:33] 2026-03-03 09:35:07,588 | INFO     | all data control threads have been joined
[2026-03-03 10:42:33] 2026-03-03 09:35:07,972 | INFO     | all payload control threads have been joined
[2026-03-03 10:42:33] 2026-03-03 09:35:08,038 | INFO     | all job control threads have been joined
[2026-03-03 10:42:33] 2026-03-03 09:35:08,405 | INFO     | [job] retrieve thread has finished
[2026-03-03 10:42:33] 2026-03-03 09:35:08,406 | INFO     | [job] job monitor thread has finished
[2026-03-03 10:42:33] 2026-03-03 09:35:08,414 | INFO     | [payload] execute_payloads thread has finished
[2026-03-03 10:42:33] 2026-03-03 09:35:08,472 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-03 10:42:33] 2026-03-03 09:35:08,594 | INFO     | [data] control thread has finished
[2026-03-03 10:42:33] 2026-03-03 09:35:08,679 | INFO     | [payload] failed_post thread has finished
[2026-03-03 10:42:33] 2026-03-03 09:35:08,752 | INFO     | [job] validate thread has finished
[2026-03-03 10:42:33] 2026-03-03 09:35:08,873 | INFO     | [payload] validate_post thread has finished
[2026-03-03 10:42:33] 2026-03-03 09:35:08,977 | INFO     | [payload] control thread has finished
[2026-03-03 10:42:33] 2026-03-03 09:35:08,980 | INFO     | [job] create_data_payload thread has finished
[2026-03-03 10:42:33] 2026-03-03 09:35:09,023 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-03 10:42:33] 2026-03-03 09:35:09,043 | INFO     | [job] control thread has finished
[2026-03-03 10:42:33] 2026-03-03 09:35:09,060 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-03 10:42:33] 2026-03-03 09:35:09,130 | INFO     | [payload] validate_pre thread has finished
[2026-03-03 10:42:33] 2026-03-03 09:35:09,497 | INFO     | [data] copytool_in thread has finished
[2026-03-03 10:42:33] 2026-03-03 09:35:09,651 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-03 10:42:33] 2026-03-03 09:35:10,065 | INFO     | [job] queue monitor thread has finished
[2026-03-03 10:42:33] 2026-03-03 09:35:10,477 | INFO     | [data] copytool_out thread has finished
[2026-03-03 10:42:33] 2026-03-03 09:35:13,028 | INFO     | [data] queue_monitor thread has finished
[2026-03-03 10:42:33] 2026-03-03 09:35:36,521 | INFO     | PID=3255662 has CPU usage=10.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-03-03 10:42:33] 2026-03-03 09:35:36,522 | INFO     | .. there are 45 such processes running
[2026-03-03 10:42:33] 2026-03-03 09:35:36,522 | INFO     | found 0 job(s) in 20 queues
[2026-03-03 10:42:33] 2026-03-03 09:35:36,522 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-03 10:42:33] 2026-03-03 09:35:36,522 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-03 10:42:33] 2026-03-03 09:35:54,614 | INFO     | [monitor] cgroup control has ended
[2026-03-03 10:42:33] 2026-03-03 09:35:56,047 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22917116811072)>', '<ExcThread(monitor, started 22916879365888)>']
[2026-03-03 10:42:33] 2026-03-03 09:35:56,622 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-03 10:42:33] 2026-03-03 09:35:56,622 | INFO     | [monitor] control thread has ended
[2026-03-03 10:42:33] 2026-03-03 09:36:01,072 | INFO     | all workflow threads have been joined
[2026-03-03 10:42:33] 2026-03-03 09:36:01,072 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-03 10:42:33] 2026-03-03 09:36:01,072 | INFO     | traces error code: 0
[2026-03-03 10:42:33] 2026-03-03 09:36:01,072 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-03 10:42:33] 2026-03-03 09:36:01,207 [wrapper] ==== pilot stdout END ====
[2026-03-03 10:42:33] 2026-03-03 09:36:01,209 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-03 10:42:33] 2026-03-03 09:36:01,212 [wrapper] pilotpid: 3255662
[2026-03-03 10:42:33] 2026-03-03 09:36:01,214 [wrapper] Pilot exit status: 0
[2026-03-03 10:42:33] 2026-03-03 09:36:01,222 [wrapper] pandaids: 7036103795
[2026-03-03 10:42:33] 2026-03-03 09:36:01,370 [wrapper] cleanup supervisor_pilot 3745933 3255663
[2026-03-03 10:42:33] 2026-03-03 09:36:01,373 [wrapper] Test setup, not cleaning
[2026-03-03 10:42:33] 2026-03-03 09:36:01,375 [wrapper] apfmon messages muted
[2026-03-03 10:42:33] 2026-03-03 09:36:01,377 [wrapper] ==== wrapper stdout END ====
[2026-03-03 10:42:33] 2026-03-03 09:36:01,380 [wrapper] ==== wrapper stderr END ====
[2026-03-03 10:42:33]  *** Error codes and diagnostics ***
[2026-03-03 10:42:33]     "exeErrorCode": 0,
[2026-03-03 10:42:33]     "exeErrorDiag": "",
[2026-03-03 10:42:33]     "pilotErrorCode": 0,
[2026-03-03 10:42:33]     "pilotErrorDiag": "",
[2026-03-03 10:42:33]  *** Listing of results directory ***
[2026-03-03 10:42:33] total 495032
[2026-03-03 10:42:33] -rw-r--r--. 1 boinc boinc    584627 Mar  2 20:44 pilot3.tar.gz
[2026-03-03 10:42:33] -rwx------. 1 boinc boinc     36322 Mar  2 20:49 runpilot2-wrapper.sh
[2026-03-03 10:42:33] -rw-r--r--. 1 boinc boinc      5111 Mar  2 20:50 queuedata.json
[2026-03-03 10:42:33] -rw-r--r--. 1 boinc boinc       100 Mar  3 08:53 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-03 10:42:33] -rwxr-xr-x. 1 boinc boinc      7986 Mar  3 08:53 run_atlas
[2026-03-03 10:42:33] -rw-r--r--. 1 boinc boinc       105 Mar  3 08:53 job.xml
[2026-03-03 10:42:33] -rw-r--r--. 2 boinc boinc 281523704 Mar  3 08:53 EVNT.48220117._000147.pool.root.1
[2026-03-03 10:42:33] -rw-r--r--. 2 boinc boinc     15845 Mar  3 08:53 start_atlas.sh
[2026-03-03 10:42:33] drwxrwx--x. 2 boinc boinc      4096 Mar  3 08:53 shared
[2026-03-03 10:42:33] -rw-r--r--. 2 boinc boinc    597966 Mar  3 08:53 input.tar.gz
[2026-03-03 10:42:33] -rw-r--r--. 1 boinc boinc      6704 Mar  3 08:53 init_data.xml
[2026-03-03 10:42:33] -rw-r--r--. 1 boinc boinc         0 Mar  3 08:53 boinc_lockfile
[2026-03-03 10:42:33] -rw-r--r--. 1 boinc boinc      2572 Mar  3 08:53 pandaJob.out
[2026-03-03 10:42:33] -rw-------. 1 boinc boinc    998412 Mar  3 08:53 agis_schedconf.cvmfs.json
[2026-03-03 10:42:33] -rw-------. 1 boinc boinc   1512931 Mar  3 08:53 agis_ddmendpoints.agis.ALL.json
[2026-03-03 10:42:33] -rw-------. 1 boinc boinc       445 Mar  3 08:53 workernode_map.json
[2026-03-03 10:42:33] drwx------. 5 boinc boinc      4096 Mar  3 08:53 pilot3
[2026-03-03 10:42:33] -rw-------. 1 boinc boinc 219118705 Mar  3 10:34 HITS.48838447._003561.pool.root.1
[2026-03-03 10:42:33] -rw-r--r--. 1 boinc boinc       528 Mar  3 10:34 boinc_task_state.xml
[2026-03-03 10:42:33] -rw-------. 1 boinc boinc      1028 Mar  3 10:34 memory_monitor_summary.json
[2026-03-03 10:42:33] -rw-------. 1 boinc boinc    292756 Mar  3 10:35 log.48838447._003561.job.log.tgz.1
[2026-03-03 10:42:33] -rw-------. 1 boinc boinc      6353 Mar  3 10:35 heartbeat.json
[2026-03-03 10:42:33] -rw-------. 1 boinc boinc        95 Mar  3 10:35 pilot_heartbeat.json
[2026-03-03 10:42:33] -rw-------. 1 boinc boinc      5122 Mar  3 10:36 pilotlog.txt
[2026-03-03 10:42:33] -rw-------. 1 boinc boinc    877812 Mar  3 10:36 log.48838447._003561.job.log.1
[2026-03-03 10:42:33] -rw-------. 1 boinc boinc       357 Mar  3 10:36 output.list
[2026-03-03 10:42:33] -rw-r--r--. 1 boinc boinc       620 Mar  3 10:36 runtime_log
[2026-03-03 10:42:33] -rw-------. 1 boinc boinc   1187840 Mar  3 10:36 result.tar.gz
[2026-03-03 10:42:33] -rw-r--r--. 1 boinc boinc      9221 Mar  3 10:36 runtime_log.err
[2026-03-03 10:42:33] -rw-------. 1 boinc boinc       663 Mar  3 10:36 o1CMDmYROH9n9Rq4apOajLDm4fhM0noT9bVooX4SDmJdCLDmP6vtVo.diag
[2026-03-03 10:42:33] -rw-r--r--. 1 boinc boinc        26 Mar  3 10:42 wrapper_checkpoint.txt
[2026-03-03 10:42:33] -rw-r--r--. 1 boinc boinc      8192 Mar  3 10:42 boinc_mmap_file
[2026-03-03 10:42:33] -rw-r--r--. 1 boinc boinc     21230 Mar  3 10:42 stderr.txt
[2026-03-03 10:42:33] HITS file was successfully produced:
[2026-03-03 10:42:33] -rw-------. 1 boinc boinc 219118705 Mar  3 10:34 shared/HITS.pool.root.1
[2026-03-03 10:42:33]  *** Contents of shared directory: ***
[2026-03-03 10:42:33] total 490680
[2026-03-03 10:42:33] -rw-r--r--. 2 boinc boinc 281523704 Mar  3 08:53 ATLAS.root_0
[2026-03-03 10:42:33] -rw-r--r--. 2 boinc boinc     15845 Mar  3 08:53 start_atlas.sh
[2026-03-03 10:42:33] -rw-r--r--. 2 boinc boinc    597966 Mar  3 08:53 input.tar.gz
[2026-03-03 10:42:33] -rw-------. 1 boinc boinc 219118705 Mar  3 10:34 HITS.pool.root.1
[2026-03-03 10:42:33] -rw-------. 1 boinc boinc   1187840 Mar  3 10:36 result.tar.gz
10:42:34 (3242534): run_atlas exited; CPU time 23589.094089
10:42:34 (3242534): called boinc_finish(0)

</stderr_txt>
]]>

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