Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
19:33:26 (3598761): wrapper (7.7.26015): starting
19:33:26 (3598761): wrapper: running run_atlas (--nthreads 3)
[2026-03-03 19:33:26] Arguments: --nthreads 3
[2026-03-03 19:33:26] Threads: 3
[2026-03-03 19:33:26] Checking for CVMFS
[2026-03-03 19:33:26] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-03 19:33:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-03 19:33:26] Running cvmfs_config stat atlas.cern.ch
[2026-03-03 19:33:26] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-03 19:33:26] 2.9.2.0 2437992 8830 84804 156853 1 49 28592160 36864001 0 130560 0 3268608 99.980 339077 15553 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-03 19:33:26] CVMFS is ok
[2026-03-03 19:33:26] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-03 19:33:26] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-03 19:33:26] Further information can be found at the LHC@home message board.
[2026-03-03 19:33:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-03 19:33:26] Checking for apptainer binary...
[2026-03-03 19:33:26] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-03 19:33:26] Running /usr/bin/apptainer --version
[2026-03-03 19:33:26] apptainer version 1.4.1-1.1
[2026-03-03 19:33:26] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-03 19:33:26] atlasA303a
[2026-03-03 19:33:26] apptainer works
[2026-03-03 19:33:26] Set ATHENA_PROC_NUMBER=3
[2026-03-03 19:33:26] Set ATHENA_CORE_NUMBER=3
[2026-03-03 19:33:26] Starting ATLAS job with PandaID=7036088961
[2026-03-03 19:33:26] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-03 20:53:49]  *** The last 200 lines of the pilot log: ***
[2026-03-03 20:53:49] 2026-03-03 19:52:57,713 | INFO     | [payload] execute_payloads thread has finished
[2026-03-03 20:53:49] 2026-03-03 19:52:57,752 | WARNING  | process 3607218 can no longer be monitored (due to stat problems) - aborting
[2026-03-03 20:53:49] 2026-03-03 19:52:57,779 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-03 20:53:49] 2026-03-03 19:52:57,814 | INFO     | number of running child processes to parent process 3607218: 1
[2026-03-03 20:53:49] 2026-03-03 19:52:57,814 | INFO     | maximum number of monitored processes: 6
[2026-03-03 20:53:49] 2026-03-03 19:52:57,814 | INFO     | aborting job monitoring since job object (job id=7036088961) has expired
[2026-03-03 20:53:49] 2026-03-03 19:52:57,814 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-03 20:53:49] 2026-03-03 19:52:57,814 | INFO     | will abort loop
[2026-03-03 20:53:49] 2026-03-03 19:52:57,980 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-03 20:53:49] 2026-03-03 19:52:58,000 | INFO     | [data] control thread has finished
[2026-03-03 20:53:49] 2026-03-03 19:52:58,043 | INFO     | [payload] validate_post thread has finished
[2026-03-03 20:53:49] 2026-03-03 19:52:58,401 | INFO     | [job] control thread has finished
[2026-03-03 20:53:49] 2026-03-03 19:52:58,536 | INFO     | [job] validate thread has finished
[2026-03-03 20:53:49] 2026-03-03 19:52:58,680 | INFO     | [job] create_data_payload thread has finished
[2026-03-03 20:53:49] 2026-03-03 19:52:58,680 | INFO     | [payload] validate_pre thread has finished
[2026-03-03 20:53:49] 2026-03-03 19:52:58,695 | INFO     | [data] copytool_out thread has finished
[2026-03-03 20:53:49] 2026-03-03 19:52:58,820 | INFO     | [job] job monitor thread has finished
[2026-03-03 20:53:49] 2026-03-03 19:53:00,192 | INFO     | [data] queue_monitor thread has finished
[2026-03-03 20:53:49] 2026-03-03 19:53:25,895 | INFO     | PID=3602797 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-03 20:53:49] 2026-03-03 19:53:25,895 | INFO     | found 0 job(s) in 20 queues
[2026-03-03 20:53:49] 2026-03-03 19:53:25,895 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-03 20:53:49] 2026-03-03 19:53:25,895 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-03 20:53:49] 2026-03-03 19:53:42,593 | INFO     | [monitor] cgroup control has ended
[2026-03-03 20:53:49] 2026-03-03 19:53:44,320 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139742287415104)>', '<ExcThread(monitor, started 139741651527424)>']
[2026-03-03 20:53:49] 2026-03-03 19:53:44,992 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-03 20:53:49] 2026-03-03 19:53:44,992 | INFO     | [monitor] control thread has ended
[2026-03-03 20:53:49] 2026-03-03 19:53:49,328 | INFO     | all workflow threads have been joined
[2026-03-03 20:53:49] 2026-03-03 19:53:49,328 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-03 20:53:49] 2026-03-03 19:53:49,328 | INFO     | traces error code: 0
[2026-03-03 20:53:49] 2026-03-03 19:53:49,328 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-03 20:53:49] 2026-03-03 19:53:49,381 [wrapper] ==== pilot stdout END ====
[2026-03-03 20:53:49] 2026-03-03 19:53:49,383 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-03 20:53:49] 2026-03-03 19:53:49,386 [wrapper] pilotpid: 3602797
[2026-03-03 20:53:49] 2026-03-03 19:53:49,388 [wrapper] Pilot exit status: 0
[2026-03-03 20:53:49] 2026-03-03 19:53:49,396 [wrapper] pandaids: 7036088961
[2026-03-03 20:53:49] 2026-03-03 19:53:49,413 [wrapper] cleanup supervisor_pilot 3612623 3602798
[2026-03-03 20:53:49] 2026-03-03 19:53:49,416 [wrapper] Test setup, not cleaning
[2026-03-03 20:53:49] 2026-03-03 19:53:49,418 [wrapper] apfmon messages muted
[2026-03-03 20:53:49] 2026-03-03 19:53:49,421 [wrapper] ==== wrapper stdout END ====
[2026-03-03 20:53:49] 2026-03-03 19:53:49,423 [wrapper] ==== wrapper stderr END ====
[2026-03-03 20:53:49]  *** Error codes and diagnostics ***
[2026-03-03 20:53:49]     "exeErrorCode": 0,
[2026-03-03 20:53:49]     "exeErrorDiag": "",
[2026-03-03 20:53:49]     "pilotErrorCode": 0,
[2026-03-03 20:53:49]     "pilotErrorDiag": "",
[2026-03-03 20:53:49]  *** Listing of results directory ***
[2026-03-03 20:53:49] total 405544
[2026-03-03 20:53:49] -rw-r--r-- 1 boinc boinc    584627 Mar  2 20:44 pilot3.tar.gz
[2026-03-03 20:53:49] -rwx------ 1 boinc boinc     36322 Mar  2 20:48 runpilot2-wrapper.sh
[2026-03-03 20:53:49] -rw-r--r-- 1 boinc boinc      5111 Mar  2 20:49 queuedata.json
[2026-03-03 20:53:49] -rw-r--r-- 1 boinc boinc       100 Mar  3 19:33 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-03 20:53:49] -rwxr-xr-x 1 boinc boinc      7986 Mar  3 19:33 run_atlas
[2026-03-03 20:53:49] -rw-r--r-- 1 boinc boinc       105 Mar  3 19:33 job.xml
[2026-03-03 20:53:49] -rw-r--r-- 2 boinc boinc 243561779 Mar  3 19:33 EVNT.48457606._000003.pool.root.1
[2026-03-03 20:53:49] drwxrwx--x 2 boinc boinc      4096 Mar  3 19:33 shared
[2026-03-03 20:53:49] -rw-r--r-- 2 boinc boinc    597966 Mar  3 19:33 input.tar.gz
[2026-03-03 20:53:49] -rw-r--r-- 2 boinc boinc     15845 Mar  3 19:33 start_atlas.sh
[2026-03-03 20:53:49] -rw-r--r-- 1 boinc boinc         0 Mar  3 19:33 boinc_setup_complete
[2026-03-03 20:53:49] -rw-r--r-- 1 boinc boinc      6450 Mar  3 19:33 init_data.xml
[2026-03-03 20:53:49] -rw-r--r-- 1 boinc boinc         0 Mar  3 19:33 boinc_lockfile
[2026-03-03 20:53:49] -rw-r--r-- 1 boinc boinc      2611 Mar  3 19:33 pandaJob.out
[2026-03-03 20:53:49] -rw------- 1 boinc boinc    998492 Mar  3 19:33 agis_schedconf.cvmfs.json
[2026-03-03 20:53:49] -rw------- 1 boinc boinc   1516092 Mar  3 19:33 agis_ddmendpoints.agis.ALL.json
[2026-03-03 20:53:49] -rw------- 1 boinc boinc       426 Mar  3 19:33 workernode_map.json
[2026-03-03 20:53:49] drwx------ 5 boinc boinc      4096 Mar  3 19:33 pilot3
[2026-03-03 20:53:49] -rw-r--r-- 1 boinc boinc       529 Mar  3 20:52 boinc_task_state.xml
[2026-03-03 20:53:49] -rw------- 1 boinc boinc 165871109 Mar  3 20:52 HITS.48849767._000071.pool.root.1
[2026-03-03 20:53:49] -rw------- 1 boinc boinc      1014 Mar  3 20:52 memory_monitor_summary.json
[2026-03-03 20:53:49] -rw------- 1 boinc boinc    260749 Mar  3 20:52 log.48849767._000071.job.log.tgz.1
[2026-03-03 20:53:49] -rw------- 1 boinc boinc      6296 Mar  3 20:52 heartbeat.json
[2026-03-03 20:53:49] -rw------- 1 boinc boinc        95 Mar  3 20:53 pilot_heartbeat.json
[2026-03-03 20:53:49] -rw-r--r-- 1 boinc boinc      8192 Mar  3 20:53 boinc_mmap_file
[2026-03-03 20:53:49] -rw-r--r-- 1 boinc boinc        27 Mar  3 20:53 wrapper_checkpoint.txt
[2026-03-03 20:53:49] -rw------- 1 boinc boinc      5272 Mar  3 20:53 pilotlog.txt
[2026-03-03 20:53:49] -rw------- 1 boinc boinc    700515 Mar  3 20:53 log.48849767._000071.job.log.1
[2026-03-03 20:53:49] -rw------- 1 boinc boinc       357 Mar  3 20:53 output.list
[2026-03-03 20:53:49] -rw-r--r-- 1 boinc boinc       620 Mar  3 20:53 runtime_log
[2026-03-03 20:53:49] -rw------- 1 boinc boinc    983040 Mar  3 20:53 result.tar.gz
[2026-03-03 20:53:49] -rw-r--r-- 1 boinc boinc      8916 Mar  3 20:53 runtime_log.err
[2026-03-03 20:53:49] -rw------- 1 boinc boinc       661 Mar  3 20:53 cZuNDmbQOH9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmUeELDmqWobOn.diag
[2026-03-03 20:53:49] -rw-r--r-- 1 boinc boinc      6649 Mar  3 20:53 stderr.txt
[2026-03-03 20:53:49] HITS file was successfully produced:
[2026-03-03 20:53:49] -rw------- 1 boinc boinc 165871109 Mar  3 20:52 shared/HITS.pool.root.1
[2026-03-03 20:53:49]  *** Contents of shared directory: ***
[2026-03-03 20:53:49] total 401408
[2026-03-03 20:53:49] -rw-r--r-- 2 boinc boinc 243561779 Mar  3 19:33 ATLAS.root_0
[2026-03-03 20:53:49] -rw-r--r-- 2 boinc boinc    597966 Mar  3 19:33 input.tar.gz
[2026-03-03 20:53:49] -rw-r--r-- 2 boinc boinc     15845 Mar  3 19:33 start_atlas.sh
[2026-03-03 20:53:49] -rw------- 1 boinc boinc 165871109 Mar  3 20:52 HITS.pool.root.1
[2026-03-03 20:53:49] -rw------- 1 boinc boinc    983040 Mar  3 20:53 result.tar.gz
20:53:51 (3598761): run_atlas exited; CPU time 13588.740492
20:53:51 (3598761): called boinc_finish(0)

</stderr_txt>
]]>

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